data_2N6W # _entry.id 2N6W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104497 RCSB ? ? 2N6W PDB pdb_00002n6w 10.2210/pdb2n6w/pdb 25784 BMRB ? 10.13018/BMR25784 D_1000104497 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-03 2 'Structure model' 1 1 2016-11-23 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N6W _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-08-28 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 25784 BMRB unspecified . 2N6S PDB unspecified . 2N6T PDB unspecified . 2N6X PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barnwal, R.' 1 'Godin, K.' 2 'Varani, G.' 3 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 4 # _citation.id primary _citation.title 'Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 44 _citation.page_first 9426 _citation.page_last 9437 _citation.year 2016 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27369378 _citation.pdbx_database_id_DOI 10.1093/nar/gkw584 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barnwal, R.P.' 1 ? primary 'Loh, E.' 2 ? primary 'Godin, K.S.' 3 ? primary 'Yip, J.' 4 ? primary 'Lavender, H.' 5 ? primary 'Tang, C.M.' 6 ? primary 'Varani, G.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (68-MER)' _entity.formula_weight 21654.719 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAAUUUAUGAGUACGUAGAGUAUAAUUAGUCUUCGGACUUCCUUAUACUUAUAUACUUAUAGAUUCC _entity_poly.pdbx_seq_one_letter_code_can GGAAUUUAUGAGUACGUAGAGUAUAAUUAGUCUUCGGACUUCCUUAUACUUAUAUACUUAUAGAUUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 A n 1 5 U n 1 6 U n 1 7 U n 1 8 A n 1 9 U n 1 10 G n 1 11 A n 1 12 G n 1 13 U n 1 14 A n 1 15 C n 1 16 G n 1 17 U n 1 18 A n 1 19 G n 1 20 A n 1 21 G n 1 22 U n 1 23 A n 1 24 U n 1 25 A n 1 26 A n 1 27 U n 1 28 U n 1 29 A n 1 30 G n 1 31 U n 1 32 C n 1 33 U n 1 34 U n 1 35 C n 1 36 G n 1 37 G n 1 38 A n 1 39 C n 1 40 U n 1 41 U n 1 42 C n 1 43 C n 1 44 U n 1 45 U n 1 46 A n 1 47 U n 1 48 A n 1 49 C n 1 50 U n 1 51 U n 1 52 A n 1 53 U n 1 54 A n 1 55 U n 1 56 A n 1 57 C n 1 58 U n 1 59 U n 1 60 A n 1 61 U n 1 62 A n 1 63 G n 1 64 A n 1 65 U n 1 66 U n 1 67 C n 1 68 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Neisseria meningitidis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 487 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 U 5 5 5 U U A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 A 8 8 8 A A A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 U 13 13 13 U U A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 A 23 23 23 A A A . n A 1 24 U 24 24 24 U U A . n A 1 25 A 25 25 25 A A A . n A 1 26 A 26 26 26 A A A . n A 1 27 U 27 27 27 U U A . n A 1 28 U 28 28 28 U U A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 C 32 32 32 C C A . n A 1 33 U 33 33 33 U U A . n A 1 34 U 34 34 34 U U A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 U 40 40 40 U U A . n A 1 41 U 41 41 41 U U A . n A 1 42 C 42 42 42 C C A . n A 1 43 C 43 43 43 C C A . n A 1 44 U 44 44 44 U U A . n A 1 45 U 45 45 45 U U A . n A 1 46 A 46 46 46 A A A . n A 1 47 U 47 47 47 U U A . n A 1 48 A 48 48 48 A A A . n A 1 49 C 49 49 49 C C A . n A 1 50 U 50 50 50 U U A . n A 1 51 U 51 51 51 U U A . n A 1 52 A 52 52 52 A A A . n A 1 53 U 53 53 53 U U A . n A 1 54 A 54 54 54 A A A . n A 1 55 U 55 55 55 U U A . n A 1 56 A 56 56 56 A A A . n A 1 57 C 57 57 57 C C A . n A 1 58 U 58 58 58 U U A . n A 1 59 U 59 59 59 U U A . n A 1 60 A 60 60 60 A A A . n A 1 61 U 61 61 61 U U A . n A 1 62 A 62 62 62 A A A . n A 1 63 G 63 63 63 G G A . n A 1 64 A 64 64 64 A A A . n A 1 65 U 65 65 65 U U A . n A 1 66 U 66 66 66 U U A . n A 1 67 C 67 67 67 C C A . n A 1 68 C 68 68 68 C C A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N6W _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N6W _struct.title 'NMR Assignment and structure of CssA Thermometer from Neisseria meningitidis' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N6W _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;RNA regulation, pathogen, RNA thermometer, RNA, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2N6W _struct_ref.pdbx_db_accession 2N6W _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2N6W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 68 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2N6W _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 68 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 68 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A G 1 A G 2 1_555 ? ? ? ? ? ? ? 1.628 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 2 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 2 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 2 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 3 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 3 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 4 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 4 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 5 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 5 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 63 O6 ? ? A U 6 A G 63 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 63 N1 ? ? A U 6 A G 63 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 7 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 7 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 61 N3 ? ? A A 8 A U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 61 O4 ? ? A A 8 A U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 60 N1 ? ? A U 9 A A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 60 N6 ? ? A U 9 A A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 58 O4 ? ? A G 10 A U 58 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 59 O2 ? ? A G 10 A U 59 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 10 O6 ? ? ? 1_555 A U 59 N3 ? ? A G 10 A U 59 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 58 N3 ? ? A A 11 A U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 58 O4 ? ? A A 11 A U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 12 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 12 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 12 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 56 N1 ? ? A U 13 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 56 N6 ? ? A U 13 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 14 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 14 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 15 N4 ? ? ? 1_555 A U 53 O4 ? ? A C 15 A U 53 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog31 hydrog ? ? A C 15 O2 ? ? ? 1_555 A A 54 N6 ? ? A C 15 A A 54 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog32 hydrog ? ? A G 16 O6 ? ? ? 1_555 A A 52 N6 ? ? A G 16 A A 52 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 A U 53 O2 ? ? A G 16 A U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? A G 16 O6 ? ? ? 1_555 A U 53 N3 ? ? A G 16 A U 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 51 O2 ? ? A A 20 A U 51 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog36 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 21 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 21 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 21 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 48 N1 ? ? A U 22 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 48 N6 ? ? A U 22 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 23 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 23 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A A 23 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 23 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 24 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 24 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 24 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 25 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 25 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 28 N3 ? ? ? 1_555 A U 41 O2 ? ? A U 28 A U 41 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog48 hydrog ? ? A U 28 O4 ? ? ? 1_555 A U 41 N3 ? ? A U 28 A U 41 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog49 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 40 N3 ? ? A A 29 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 40 O4 ? ? A A 29 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 30 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 30 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 30 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 31 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 31 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 32 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 32 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 32 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 33 O2 ? ? ? 1_555 A G 36 N1 ? ? A U 33 A G 36 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog60 hydrog ? ? A U 33 O2 ? ? ? 1_555 A G 37 N1 ? ? A U 33 A G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H61 A A 20 ? ? O2 A U 51 ? ? 1.48 2 1 "HO2'" A A 52 ? ? "O4'" A U 53 ? ? 1.53 3 2 "HO2'" A U 50 ? ? "O4'" A U 51 ? ? 1.55 4 4 O6 A G 21 ? ? H41 A C 49 ? ? 1.60 5 4 O4 A U 22 ? ? H61 A A 48 ? ? 1.60 6 4 H61 A A 20 ? ? O2 A U 51 ? ? 1.60 7 5 "HO2'" A G 19 ? ? "O5'" A A 20 ? ? 1.49 8 5 "O2'" A U 33 ? ? "H2'" A U 34 ? ? 1.57 9 5 "HO2'" A C 43 ? ? OP1 A U 44 ? ? 1.59 10 5 H61 A A 20 ? ? O2 A U 51 ? ? 1.60 11 6 "HO2'" A A 38 ? ? "O4'" A C 39 ? ? 1.44 12 7 "HO2'" A U 33 ? ? O6 A G 36 ? ? 1.48 13 7 H61 A A 20 ? ? O2 A U 51 ? ? 1.54 14 7 H61 A A 23 ? ? O4 A U 47 ? ? 1.60 15 9 H21 A G 19 ? ? O2 A U 51 ? ? 1.56 16 10 H41 A C 15 ? ? O4 A U 53 ? ? 1.59 # _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center SSGCID _pdbx_SG_project.project_name ? # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N6W _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N6W _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents ;0.4-1.1 mM CssA RNA thermometer (68-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA RNA thermometer (68-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA RNA thermometer (68-MER), 0.4-1.1 mM partially deuterated CssA RNA thermometer (68-MER), 95% H2O/5% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'CssA RNA thermometer (68-MER)-1' ? 0.4-1.1 mM ? 1 'CssA RNA thermometer (68-MER)-2' ? 0.4-1.1 mM '13C/15N-uniformly labeled' 1 'CssA RNA thermometer (68-MER)-3' ? 0.4-1.1 mM '13C/15N-AU labeled' 1 'CssA RNA thermometer (68-MER)-4' ? 0.4-1.1 mM 'partially deuterated' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 280 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-1H NOESY' 1 5 1 '2D DQF-COSY' 1 6 1 '3D HCCH-TOCSY' 1 7 1 '3D 1H-13C NOESY' 1 8 1 ARTSY 1 9 1 ARTSY # _pdbx_nmr_refine.entry_id 2N6W _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 'Bruker Biospin' processing TopSpin ? 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 'data analysis' NMRPipe ? 4 Goddard 'chemical shift assignment' Sparky ? 5 Goddard 'data analysis' Sparky ? 6 Goddard 'peak picking' Sparky ? 7 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 8 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' ? 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N6W 'double helix' 2N6W 'a-form double helix' 2N6W tetraloop 2N6W 'mismatched base pair' 2N6W 'internal loop' 2N6W 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 67 1_555 -0.397 -0.336 0.053 2.296 -10.335 -6.515 1 A_G2:C67_A A 2 ? A 67 ? 19 1 1 A A 3 1_555 A U 66 1_555 -0.732 -0.193 0.198 -0.677 -9.726 1.937 2 A_A3:U66_A A 3 ? A 66 ? 20 1 1 A A 4 1_555 A U 65 1_555 -0.179 -0.275 -0.197 -5.453 -11.426 7.257 3 A_A4:U65_A A 4 ? A 65 ? 20 1 1 A U 5 1_555 A A 64 1_555 0.122 -0.305 0.445 -2.426 -22.463 -2.001 4 A_U5:A64_A A 5 ? A 64 ? 20 1 1 A U 6 1_555 A G 63 1_555 2.183 -0.626 0.029 -4.981 -19.374 -9.923 5 A_U6:G63_A A 6 ? A 63 ? 28 1 1 A U 7 1_555 A A 62 1_555 0.283 -0.138 -0.049 0.267 -16.160 -14.324 6 A_U7:A62_A A 7 ? A 62 ? 20 1 1 A A 8 1_555 A U 61 1_555 -0.072 -0.240 -0.309 -0.938 -15.299 -7.115 7 A_A8:U61_A A 8 ? A 61 ? 20 1 1 A U 9 1_555 A A 60 1_555 0.208 -0.188 0.031 5.200 -9.356 7.202 8 A_U9:A60_A A 9 ? A 60 ? 20 1 1 A G 10 1_555 A U 59 1_555 -2.430 -0.503 0.179 -8.154 -7.133 4.990 9 A_G10:U59_A A 10 ? A 59 ? 28 1 1 A A 11 1_555 A U 58 1_555 0.599 -0.177 0.425 6.928 -19.784 -16.403 10 A_A11:U58_A A 11 ? A 58 ? 20 1 1 A G 12 1_555 A C 57 1_555 -0.738 -0.264 -0.237 -1.840 -12.332 -2.579 11 A_G12:C57_A A 12 ? A 57 ? 19 1 1 A U 13 1_555 A A 56 1_555 0.460 -0.263 -0.627 16.152 -2.373 -14.449 12 A_U13:A56_A A 13 ? A 56 ? 20 1 1 A A 14 1_555 A U 55 1_555 -0.503 -0.206 -0.393 -13.243 -10.062 -11.114 13 A_A14:U55_A A 14 ? A 55 ? 20 1 1 A C 15 1_555 A A 54 1_555 5.217 -1.490 1.378 -9.904 -17.892 5.315 14 A_C15:A54_A A 15 ? A 54 ? ? ? 1 A G 16 1_555 A U 53 1_555 -3.092 -1.696 0.811 -13.711 -29.859 -25.729 15 A_G16:U53_A A 16 ? A 53 ? 28 1 1 A A 20 1_555 A U 51 1_555 -5.985 -0.508 -0.323 -38.051 -2.050 71.879 16 A_A20:U51_A A 20 ? A 51 ? ? 5 1 A G 21 1_555 A C 49 1_555 -0.620 -0.384 -0.634 -7.039 -3.589 -4.259 17 A_G21:C49_A A 21 ? A 49 ? 19 1 1 A U 22 1_555 A A 48 1_555 0.493 -0.317 -0.756 1.715 -11.609 -11.370 18 A_U22:A48_A A 22 ? A 48 ? 20 1 1 A A 23 1_555 A U 47 1_555 0.094 -0.276 -0.179 -9.838 -7.373 -4.954 19 A_A23:U47_A A 23 ? A 47 ? 20 1 1 A U 24 1_555 A A 46 1_555 0.499 -0.209 -0.365 8.736 -1.155 5.900 20 A_U24:A46_A A 24 ? A 46 ? 20 1 1 A A 25 1_555 A U 45 1_555 0.149 -0.283 -0.194 2.240 5.066 -5.473 21 A_A25:U45_A A 25 ? A 45 ? 20 1 1 A U 28 1_555 A U 41 1_555 -2.029 -1.967 0.851 25.347 -12.624 -8.041 22 A_U28:U41_A A 28 ? A 41 ? 16 1 1 A A 29 1_555 A U 40 1_555 -0.075 -0.240 0.167 10.026 -12.877 1.090 23 A_A29:U40_A A 29 ? A 40 ? 20 1 1 A G 30 1_555 A C 39 1_555 -0.392 -0.227 -0.018 1.675 -15.799 3.162 24 A_G30:C39_A A 30 ? A 39 ? 19 1 1 A U 31 1_555 A A 38 1_555 0.654 -0.217 -0.408 7.490 -15.779 1.945 25 A_U31:A38_A A 31 ? A 38 ? 20 1 1 A C 32 1_555 A G 37 1_555 0.731 -0.320 -0.356 -10.561 -1.600 4.595 26 A_C32:G37_A A 32 ? A 37 ? 19 1 1 A U 33 1_555 A G 36 1_555 0.448 -6.039 0.009 -7.694 -6.728 -108.049 27 A_U33:G36_A A 33 ? A 36 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 67 1_555 A A 3 1_555 A U 66 1_555 0.593 -1.019 3.716 -1.355 4.647 31.774 -2.765 -1.342 3.508 8.426 2.457 32.132 1 AA_G2A3:U66C67_AA A 2 ? A 67 ? A 3 ? A 66 ? 1 A A 3 1_555 A U 66 1_555 A A 4 1_555 A U 65 1_555 -0.117 -1.072 3.677 0.463 11.846 29.498 -4.277 0.304 3.030 22.170 -0.866 31.743 2 AA_A3A4:U65U66_AA A 3 ? A 66 ? A 4 ? A 65 ? 1 A A 4 1_555 A U 65 1_555 A U 5 1_555 A A 64 1_555 -0.754 -0.446 3.213 -3.601 3.869 41.545 -1.022 0.685 3.212 5.428 5.052 41.865 3 AA_A4U5:A64U65_AA A 4 ? A 65 ? A 5 ? A 64 ? 1 A U 5 1_555 A A 64 1_555 A U 6 1_555 A G 63 1_555 -1.125 -0.398 3.458 4.088 8.124 41.669 -1.393 1.974 3.209 11.259 -5.666 42.607 4 AA_U5U6:G63A64_AA A 5 ? A 64 ? A 6 ? A 63 ? 1 A U 6 1_555 A G 63 1_555 A U 7 1_555 A A 62 1_555 -0.457 -0.996 2.985 4.195 13.341 29.548 -3.729 1.429 2.255 24.504 -7.705 32.623 5 AA_U6U7:A62G63_AA A 6 ? A 63 ? A 7 ? A 62 ? 1 A U 7 1_555 A A 62 1_555 A A 8 1_555 A U 61 1_555 1.565 -0.918 3.130 1.692 13.035 31.858 -3.420 -2.405 2.641 22.583 -2.931 34.398 6 AA_U7A8:U61A62_AA A 7 ? A 62 ? A 8 ? A 61 ? 1 A A 8 1_555 A U 61 1_555 A U 9 1_555 A A 60 1_555 1.055 -0.694 3.207 1.032 5.032 37.005 -1.728 -1.516 3.117 7.881 -1.616 37.347 7 AA_A8U9:A60U61_AA A 8 ? A 61 ? A 9 ? A 60 ? 1 A U 9 1_555 A A 60 1_555 A G 10 1_555 A U 59 1_555 -0.661 -2.099 2.539 -12.307 24.056 19.656 -5.846 0.037 0.253 48.617 24.872 33.307 8 AA_U9G10:U59A60_AA A 9 ? A 60 ? A 10 ? A 59 ? 1 A G 10 1_555 A U 59 1_555 A A 11 1_555 A U 58 1_555 -2.567 -0.100 2.678 -3.935 -6.497 52.228 0.245 2.673 2.843 -7.336 4.443 52.739 9 AA_G10A11:U58U59_AA A 10 ? A 59 ? A 11 ? A 58 ? 1 A A 11 1_555 A U 58 1_555 A G 12 1_555 A C 57 1_555 1.801 -1.080 3.458 4.274 8.324 31.081 -3.475 -2.435 3.279 15.111 -7.758 32.425 10 AA_A11G12:C57U58_AA A 11 ? A 58 ? A 12 ? A 57 ? 1 A G 12 1_555 A C 57 1_555 A U 13 1_555 A A 56 1_555 -1.318 -0.895 2.784 -0.064 -3.784 43.238 -0.894 1.777 2.850 -5.123 0.087 43.396 11 AA_G12U13:A56C57_AA A 12 ? A 57 ? A 13 ? A 56 ? 1 A U 13 1_555 A A 56 1_555 A A 14 1_555 A U 55 1_555 1.530 -1.446 3.465 12.673 25.117 33.708 -4.390 -0.825 2.327 36.456 -18.394 43.642 12 AA_U13A14:U55A56_AA A 13 ? A 56 ? A 14 ? A 55 ? 1 A A 14 1_555 A U 55 1_555 A C 15 1_555 A A 54 1_555 1.187 0.158 3.340 -2.128 12.556 54.668 -0.566 -1.388 3.256 13.468 2.283 56.020 13 AA_A14C15:A54U55_AA A 14 ? A 55 ? A 15 ? A 54 ? 1 A C 15 1_555 A A 54 1_555 A G 16 1_555 A U 53 1_555 -1.739 -0.877 2.444 0.252 2.885 11.769 -6.759 8.465 2.129 13.797 -1.204 12.119 14 AA_C15G16:U53A54_AA A 15 ? A 54 ? A 16 ? A 53 ? 1 A G 16 1_555 A U 53 1_555 A A 20 1_555 A U 51 1_555 0.143 -5.090 4.845 -16.101 29.946 101.412 -3.753 -0.388 3.653 18.986 10.208 105.452 15 AA_G16A20:U51U53_AA A 16 ? A 53 ? A 20 ? A 51 ? 1 A A 20 1_555 A U 51 1_555 A G 21 1_555 A C 49 1_555 -2.037 -0.721 4.918 -24.186 -0.306 66.097 -0.611 0.376 5.309 -0.271 21.448 69.910 16 AA_A20G21:C49U51_AA A 20 ? A 51 ? A 21 ? A 49 ? 1 A G 21 1_555 A C 49 1_555 A U 22 1_555 A A 48 1_555 -1.749 -0.989 3.134 0.920 -4.623 37.554 -0.948 2.812 3.186 -7.146 -1.422 37.838 17 AA_G21U22:A48C49_AA A 21 ? A 49 ? A 22 ? A 48 ? 1 A U 22 1_555 A A 48 1_555 A A 23 1_555 A U 47 1_555 1.325 -1.390 3.333 0.423 16.298 29.910 -4.781 -2.205 2.309 29.024 -0.754 33.976 18 AA_U22A23:U47A48_AA A 22 ? A 48 ? A 23 ? A 47 ? 1 A A 23 1_555 A U 47 1_555 A U 24 1_555 A A 46 1_555 1.369 -1.229 2.594 -0.168 4.622 31.740 -2.861 -2.502 2.389 8.394 0.304 32.066 19 AA_A23U24:A46U47_AA A 23 ? A 47 ? A 24 ? A 46 ? 1 A U 24 1_555 A A 46 1_555 A A 25 1_555 A U 45 1_555 -1.289 -1.686 3.542 -3.399 4.797 30.711 -4.098 1.706 3.366 8.954 6.346 31.255 20 AA_U24A25:U45A46_AA A 24 ? A 46 ? A 25 ? A 45 ? 1 A U 28 1_555 A U 41 1_555 A A 29 1_555 A U 40 1_555 -1.010 -0.127 4.128 5.778 16.808 42.828 -1.947 1.901 3.676 21.923 -7.536 46.209 21 AA_U28A29:U40U41_AA A 28 ? A 41 ? A 29 ? A 40 ? 1 A A 29 1_555 A U 40 1_555 A G 30 1_555 A C 39 1_555 0.882 -0.466 4.133 3.560 -3.219 35.106 -0.159 -0.778 4.224 -5.306 -5.868 35.423 22 AA_A29G30:C39U40_AA A 29 ? A 40 ? A 30 ? A 39 ? 1 A G 30 1_555 A C 39 1_555 A U 31 1_555 A A 38 1_555 -0.178 -0.797 3.521 2.007 -2.036 33.843 -1.011 0.652 3.546 -3.489 -3.441 33.960 23 AA_G30U31:A38C39_AA A 30 ? A 39 ? A 31 ? A 38 ? 1 A U 31 1_555 A A 38 1_555 A C 32 1_555 A G 37 1_555 -0.550 -0.656 4.930 -2.349 -1.397 33.313 -0.790 0.367 4.978 -2.431 4.089 33.421 24 AA_U31C32:G37A38_AA A 31 ? A 38 ? A 32 ? A 37 ? 1 A C 32 1_555 A G 37 1_555 A U 33 1_555 A G 36 1_555 0.203 -0.111 2.835 13.564 13.627 105.154 -0.229 0.032 2.821 8.533 -8.494 106.380 25 AA_C32U33:G36G37_AA A 32 ? A 37 ? A 33 ? A 36 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 600 Bruker AVANCE 2 'Bruker Avance' 900 Agilent INOVA 3 'Agilent INOVA' # _atom_sites.entry_id 2N6W _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P Q # loop_