data_2N7M # _entry.id 2N7M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104523 RCSB ? ? 2N7M PDB pdb_00002n7m 10.2210/pdb2n7m/pdb 25811 BMRB ? ? D_1000104523 WWPDB ? ? # _pdbx_database_related.db_id 25811 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N7M _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-09-14 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cornilescu, G.' 1 'Didychuk, A.L.' 2 'Rodgers, M.L.' 3 'Michael, L.A.' 4 'Burke, J.E.' 5 'Montemayor, E.J.' 6 'Hoskins, A.A.' 7 'Butcher, S.E.' 8 'Tonelli, M.' 9 # _citation.id primary _citation.title 'Structural Analysis of Multi-Helical RNAs by NMR-SAXS/WAXS: Application to the U4/U6 di-snRNA.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 428 _citation.page_first 777 _citation.page_last 789 _citation.year 2016 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26655855 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2015.11.026 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cornilescu, G.' 1 ? primary 'Didychuk, A.L.' 2 ? primary 'Rodgers, M.L.' 3 ? primary 'Michael, L.A.' 4 ? primary 'Burke, J.E.' 5 ? primary 'Montemayor, E.J.' 6 ? primary 'Hoskins, A.A.' 7 ? primary 'Butcher, S.E.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (92-MER)' _entity.formula_weight 29563.443 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'U4/U6 base pairing region' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUGUAAAUCAGCAGUUCCC CUGCAUAAGGCU ; _entity_poly.pdbx_seq_one_letter_code_can ;GGCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUGUAAAUCAGCAGUUCCC CUGCAUAAGGCU ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 C n 1 5 U n 1 6 U n 1 7 A n 1 8 U n 1 9 G n 1 10 C n 1 11 A n 1 12 C n 1 13 G n 1 14 G n 1 15 G n 1 16 A n 1 17 A n 1 18 A n 1 19 U n 1 20 A n 1 21 C n 1 22 G n 1 23 C n 1 24 A n 1 25 U n 1 26 A n 1 27 U n 1 28 C n 1 29 A n 1 30 G n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 G n 1 36 A n 1 37 U n 1 38 U n 1 39 C n 1 40 G n 1 41 U n 1 42 C n 1 43 C n 1 44 G n 1 45 A n 1 46 G n 1 47 A n 1 48 U n 1 49 U n 1 50 G n 1 51 U n 1 52 G n 1 53 U n 1 54 U n 1 55 U n 1 56 U n 1 57 U n 1 58 G n 1 59 C n 1 60 U n 1 61 G n 1 62 G n 1 63 U n 1 64 G n 1 65 U n 1 66 A n 1 67 A n 1 68 A n 1 69 U n 1 70 C n 1 71 A n 1 72 G n 1 73 C n 1 74 A n 1 75 G n 1 76 U n 1 77 U n 1 78 C n 1 79 C n 1 80 C n 1 81 C n 1 82 U n 1 83 G n 1 84 C n 1 85 A n 1 86 U n 1 87 A n 1 88 A n 1 89 G n 1 90 G n 1 91 C n 1 92 U n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2N7M _struct_ref.pdbx_db_accession 2N7M _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2N7M _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 92 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2N7M _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 91 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 3 '2D 1H-15N HSQC' 2 3 2 '2D 1H-13C HSQC' 2 4 4 '2D 1H-13C HSQC' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 58.5 7.0 ambient ? 298 K 2 58.5 7.0 ambient ? 303 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.6 mM [U-13C; U-15N]-Gua, -Ura RNA (92-MER), 0.02 mM potassium chloride, 0.02 mM potassium phosphate, 95% H2O/5% D2O' 1 '95% H2O/5% D2O' '0.7 mM [U-13C; U-15N]-Ade RNA (92-MER), 0.02 mM potassium chloride, 0.02 mM potassium phosphate, 95% H2O/5% D2O' 2 '95% H2O/5% D2O' ;0.6 mM [U-13C; U-15N]-Gua, -Ura RNA (92-MER), 0.02 mM potassium chloride, 0.02 mM potassium phosphate, 5 mg/mL Pf1 phage, 95% H2O/5% D2O ; 3 '95% H2O/5% D2O' '0.7 mM [U-13C; U-15N]-Ade RNA (92-MER), 0.02 mM potassium chloride, 0.02 mM potassium phosphate, 5 mg/mL Pf1 phage, 95% H2O/5% D2O' 4 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Agilent INOVA 1 'Agilent INOVA' 800 Agilent INOVA 2 'Agilent INOVA' 750 Bruker DMX 3 'Bruker DMX' 600 Bruker AVANCE 4 'Bruker Avance' 500 Bruker AVANCE 5 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2N7M _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N7M _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N7M _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 'peak picking' NMRDraw ? 3 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N7M _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N7M _struct.title 'NMR-SAXS/WAXS Structure of the core of the U4/U6 di-snRNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N7M _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, spliceosome, U4/U6, K-turn' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A U 92 O2 ? ? X G 0 X U 91 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 A U 92 N3 ? ? X G 0 X U 91 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 91 N3 ? ? X G 1 X C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 91 O2 ? ? X G 1 X C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 91 N4 ? ? X G 1 X C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 90 N1 ? ? X C 2 X G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 90 O6 ? ? X C 2 X G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 90 N2 ? ? X C 2 X G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 89 N1 ? ? X C 3 X G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 89 O6 ? ? X C 3 X G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 89 N2 ? ? X C 3 X G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 88 N1 ? ? X U 4 X A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 88 N6 ? ? X U 4 X A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 87 N1 ? ? X U 5 X A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 87 N6 ? ? X U 5 X A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 86 N3 ? ? X A 6 X U 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 86 O4 ? ? X A 6 X U 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 85 N1 ? ? X U 7 X A 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 85 N6 ? ? X U 7 X A 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 84 N3 ? ? X G 8 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 84 O2 ? ? X G 8 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 84 N4 ? ? X G 8 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 83 N1 ? ? X C 9 X G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 83 O6 ? ? X C 9 X G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 83 N2 ? ? X C 9 X G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 82 N3 ? ? X A 10 X U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 82 O4 ? ? X A 10 X U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 80 N3 ? ? X G 12 X C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 80 O2 ? ? X G 12 X C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 80 N4 ? ? X G 12 X C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 79 N3 ? ? X G 13 X C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 79 O2 ? ? X G 13 X C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 79 N4 ? ? X G 13 X C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 78 N3 ? ? X G 14 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 78 O2 ? ? X G 14 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 78 N4 ? ? X G 14 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 77 N3 ? ? X A 15 X U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 77 O4 ? ? X A 15 X U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 76 N3 ? ? X A 16 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 76 O4 ? ? X A 16 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 53 N3 ? ? X A 19 X U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 53 O4 ? ? X A 19 X U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 52 N1 ? ? X C 20 X G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 52 O6 ? ? X C 20 X G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 52 N2 ? ? X C 20 X G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 22 N1 ? ? ? 1_555 A U 51 O2 ? ? X G 21 X U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? A G 22 O6 ? ? ? 1_555 A U 51 N3 ? ? X G 21 X U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog48 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 50 N1 ? ? X C 22 X G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 50 O6 ? ? X C 22 X G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 50 N2 ? ? X C 22 X G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 24 N1 ? ? ? 1_555 A U 49 N3 ? ? X A 23 X U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 49 O4 ? ? X A 23 X U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 26 N1 ? ? ? 1_555 A U 48 N3 ? ? X A 25 X U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 26 N6 ? ? ? 1_555 A U 48 O4 ? ? X A 25 X U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 47 N1 ? ? X U 26 X A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 47 N6 ? ? X U 26 X A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 46 N1 ? ? X C 27 X G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 46 O6 ? ? X C 27 X G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 46 N2 ? ? X C 27 X G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 33 N6 ? ? ? 1_555 A G 44 N3 ? ? X A 32 X G 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog61 hydrog ? ? A A 33 N7 ? ? ? 1_555 A G 44 N2 ? ? X A 32 X G 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog62 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 33 X C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 33 X C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 33 X C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 42 N3 ? ? X G 34 X C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 42 O2 ? ? X G 34 X C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 42 N4 ? ? X G 34 X C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 36 N1 ? ? ? 1_555 A U 41 N3 ? ? X A 35 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 36 N6 ? ? ? 1_555 A U 41 O4 ? ? X A 35 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A U 37 O2 ? ? ? 1_555 A G 40 N1 ? ? X U 36 X G 39 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog71 hydrog ? ? A U 57 N3 ? ? ? 1_555 A A 74 N1 ? ? X U 56 X A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 57 O4 ? ? ? 1_555 A A 74 N6 ? ? X U 56 X A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 73 N3 ? ? X G 57 X C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 73 O2 ? ? X G 57 X C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 73 N4 ? ? X G 57 X C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 59 N3 ? ? ? 1_555 A G 72 N1 ? ? X C 58 X G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 59 N4 ? ? ? 1_555 A G 72 O6 ? ? X C 58 X G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 59 O2 ? ? ? 1_555 A G 72 N2 ? ? X C 58 X G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A U 60 N3 ? ? ? 1_555 A A 71 N1 ? ? X U 59 X A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A U 60 O4 ? ? ? 1_555 A A 71 N6 ? ? X U 59 X A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 61 N1 ? ? ? 1_555 A C 70 N3 ? ? X G 60 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 61 N2 ? ? ? 1_555 A C 70 O2 ? ? X G 60 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 61 O6 ? ? ? 1_555 A C 70 N4 ? ? X G 60 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 62 N1 ? ? ? 1_555 A U 69 O2 ? ? X G 61 X U 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog85 hydrog ? ? A G 62 O6 ? ? ? 1_555 A U 69 N3 ? ? X G 61 X U 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog86 hydrog ? ? A G 62 N1 ? ? ? 1_555 A C 70 O2 ? ? X G 61 X C 69 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog87 hydrog ? ? A U 63 N3 ? ? ? 1_555 A A 68 N1 ? ? X U 62 X A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A U 63 O4 ? ? ? 1_555 A A 68 N6 ? ? X U 62 X A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 64 N2 ? ? ? 1_555 A A 67 N7 ? ? X G 63 X A 66 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2N7M _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 0 0 G G X . n A 1 2 G 2 1 1 G G X . n A 1 3 C 3 2 2 C C X . n A 1 4 C 4 3 3 C C X . n A 1 5 U 5 4 4 U U X . n A 1 6 U 6 5 5 U U X . n A 1 7 A 7 6 6 A A X . n A 1 8 U 8 7 7 U U X . n A 1 9 G 9 8 8 G G X . n A 1 10 C 10 9 9 C C X . n A 1 11 A 11 10 10 A A X . n A 1 12 C 12 11 11 C C X . n A 1 13 G 13 12 12 G G X . n A 1 14 G 14 13 13 G G X . n A 1 15 G 15 14 14 G G X . n A 1 16 A 16 15 15 A A X . n A 1 17 A 17 16 16 A A X . n A 1 18 A 18 17 17 A A X . n A 1 19 U 19 18 18 U U X . n A 1 20 A 20 19 19 A A X . n A 1 21 C 21 20 20 C C X . n A 1 22 G 22 21 21 G G X . n A 1 23 C 23 22 22 C C X . n A 1 24 A 24 23 23 A A X . n A 1 25 U 25 24 24 U U X . n A 1 26 A 26 25 25 A A X . n A 1 27 U 27 26 26 U U X . n A 1 28 C 28 27 27 C C X . n A 1 29 A 29 28 28 A A X . n A 1 30 G 30 29 29 G G X . n A 1 31 U 31 30 30 U U X . n A 1 32 G 32 31 31 G G X . n A 1 33 A 33 32 32 A A X . n A 1 34 G 34 33 33 G G X . n A 1 35 G 35 34 34 G G X . n A 1 36 A 36 35 35 A A X . n A 1 37 U 37 36 36 U U X . n A 1 38 U 38 37 37 U U X . n A 1 39 C 39 38 38 C C X . n A 1 40 G 40 39 39 G G X . n A 1 41 U 41 40 40 U U X . n A 1 42 C 42 41 41 C C X . n A 1 43 C 43 42 42 C C X . n A 1 44 G 44 43 43 G G X . n A 1 45 A 45 44 44 A A X . n A 1 46 G 46 45 45 G G X . n A 1 47 A 47 46 46 A A X . n A 1 48 U 48 47 47 U U X . n A 1 49 U 49 48 48 U U X . n A 1 50 G 50 49 49 G G X . n A 1 51 U 51 50 50 U U X . n A 1 52 G 52 51 51 G G X . n A 1 53 U 53 52 52 U U X . n A 1 54 U 54 53 53 U U X . n A 1 55 U 55 54 54 U U X . n A 1 56 U 56 55 55 U U X . n A 1 57 U 57 56 56 U U X . n A 1 58 G 58 57 57 G G X . n A 1 59 C 59 58 58 C C X . n A 1 60 U 60 59 59 U U X . n A 1 61 G 61 60 60 G G X . n A 1 62 G 62 61 61 G G X . n A 1 63 U 63 62 62 U U X . n A 1 64 G 64 63 63 G G X . n A 1 65 U 65 64 64 U U X . n A 1 66 A 66 65 65 A A X . n A 1 67 A 67 66 66 A A X . n A 1 68 A 68 67 67 A A X . n A 1 69 U 69 68 68 U U X . n A 1 70 C 70 69 69 C C X . n A 1 71 A 71 70 70 A A X . n A 1 72 G 72 71 71 G G X . n A 1 73 C 73 72 72 C C X . n A 1 74 A 74 73 73 A A X . n A 1 75 G 75 74 74 G G X . n A 1 76 U 76 75 75 U U X . n A 1 77 U 77 76 76 U U X . n A 1 78 C 78 77 77 C C X . n A 1 79 C 79 78 78 C C X . n A 1 80 C 80 79 79 C C X . n A 1 81 C 81 80 80 C C X . n A 1 82 U 82 81 81 U U X . n A 1 83 G 83 82 82 G G X . n A 1 84 C 84 83 83 C C X . n A 1 85 A 85 84 84 A A X . n A 1 86 U 86 85 85 U U X . n A 1 87 A 87 86 86 A A X . n A 1 88 A 88 87 87 A A X . n A 1 89 G 89 88 88 G G X . n A 1 90 G 90 89 89 G G X . n A 1 91 C 91 90 90 C C X . n A 1 92 U 92 91 91 U U X . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-30 2 'Structure model' 1 1 2016-03-30 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'RNA (92-MER)-1' 0.6 ? mM '[U-13C; U-15N]-Gua, -Ura' 1 'potassium chloride-2' 0.02 ? mM ? 1 'potassium phosphate-3' 0.02 ? mM ? 1 'RNA (92-MER)-4' 0.7 ? mM '[U-13C; U-15N]-Ade' 2 'potassium chloride-5' 0.02 ? mM ? 2 'potassium phosphate-6' 0.02 ? mM ? 2 'RNA (92-MER)-7' 0.6 ? mM '[U-13C; U-15N]-Gua, -Ura' 3 'potassium chloride-8' 0.02 ? mM ? 3 'potassium phosphate-9' 0.02 ? mM ? 3 'Pf1 phage-10' 5 ? mg/mL ? 3 'RNA (92-MER)-11' 0.7 ? mM '[U-13C; U-15N]-Ade' 4 'potassium chloride-12' 0.02 ? mM ? 4 'potassium phosphate-13' 0.02 ? mM ? 4 'Pf1 phage-14' 5 ? mg/mL ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 O2 X U 36 ? ? H21 X G 39 ? ? 1.58 2 8 O2 X U 36 ? ? H21 X G 39 ? ? 1.55 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" X U 24 ? ? "O4'" X U 24 ? ? "C4'" X U 24 ? ? 105.44 109.70 -4.26 0.70 N 2 2 "C1'" X G 29 ? ? "O4'" X G 29 ? ? "C4'" X G 29 ? ? 105.16 109.70 -4.54 0.70 N 3 2 "C5'" X G 39 ? ? "C4'" X G 39 ? ? "O4'" X G 39 ? ? 117.75 109.80 7.95 0.90 N 4 3 "C3'" X G 39 ? ? "O3'" X G 39 ? ? P X U 40 ? ? 127.00 119.70 7.30 1.20 Y 5 4 "O4'" X C 38 ? ? "C1'" X C 38 ? ? N1 X C 38 ? ? 112.87 108.50 4.37 0.70 N 6 4 "C3'" X G 39 ? ? "O3'" X G 39 ? ? P X U 40 ? ? 127.75 119.70 8.05 1.20 Y 7 5 "O4'" X G 39 ? ? "C1'" X G 39 ? ? N9 X G 39 ? ? 113.74 108.50 5.24 0.70 N 8 5 "C3'" X A 44 ? ? "O3'" X A 44 ? ? P X G 45 ? ? 127.59 119.70 7.89 1.20 Y 9 6 "C3'" X G 39 ? ? "O3'" X G 39 ? ? P X U 40 ? ? 127.39 119.70 7.69 1.20 Y 10 7 "C5'" X G 39 ? ? "C4'" X G 39 ? ? "O4'" X G 39 ? ? 116.68 109.80 6.88 0.90 N 11 7 "C3'" X A 44 ? ? "O3'" X A 44 ? ? P X G 45 ? ? 128.13 119.70 8.43 1.20 Y 12 8 "C5'" X G 39 ? ? "C4'" X G 39 ? ? "O4'" X G 39 ? ? 117.24 109.80 7.44 0.90 N 13 8 N9 X G 39 ? ? "C1'" X G 39 ? ? "C2'" X G 39 ? ? 122.85 114.00 8.85 1.30 N 14 8 "C3'" X A 44 ? ? "O3'" X A 44 ? ? P X G 45 ? ? 127.53 119.70 7.83 1.20 Y 15 9 "O4'" X G 39 ? ? "C1'" X G 39 ? ? N9 X G 39 ? ? 113.22 108.50 4.72 0.70 N 16 10 "O4'" X C 38 ? ? "C1'" X C 38 ? ? N1 X C 38 ? ? 113.11 108.50 4.61 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 5 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id X _pdbx_validate_planes.auth_seq_id 39 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.060 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N7M 'double helix' 2N7M 'a-form double helix' 2N7M tetraloop 2N7M 'bulge loop' 2N7M 'mismatched base pair' 2N7M 'internal loop' 2N7M 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A U 92 1_555 -2.705 -0.449 0.013 -0.944 -6.018 4.392 1 X_G0:U91_X X 0 ? X 91 ? 28 1 1 A G 2 1_555 A C 91 1_555 0.465 0.135 -0.460 -20.251 -3.870 5.349 2 X_G1:C90_X X 1 ? X 90 ? 19 1 1 A C 3 1_555 A G 90 1_555 0.659 -0.012 0.108 4.957 -1.005 5.169 3 X_C2:G89_X X 2 ? X 89 ? 19 1 1 A C 4 1_555 A G 89 1_555 0.684 -0.079 0.627 -20.968 -12.910 -3.396 4 X_C3:G88_X X 3 ? X 88 ? 19 1 1 A U 5 1_555 A A 88 1_555 -0.620 0.167 0.267 13.962 -13.163 -3.085 5 X_U4:A87_X X 4 ? X 87 ? 20 1 1 A U 6 1_555 A A 87 1_555 -0.237 -0.041 0.184 10.348 -31.019 -23.986 6 X_U5:A86_X X 5 ? X 86 ? 20 1 1 A A 7 1_555 A U 86 1_555 0.350 0.173 0.259 12.923 -13.249 -13.805 7 X_A6:U85_X X 6 ? X 85 ? 20 1 1 A U 8 1_555 A A 85 1_555 -0.339 0.162 0.206 -5.433 -10.342 -2.772 8 X_U7:A84_X X 7 ? X 84 ? 20 1 1 A G 9 1_555 A C 84 1_555 -0.531 0.084 0.043 14.150 -10.655 0.446 9 X_G8:C83_X X 8 ? X 83 ? 19 1 1 A C 10 1_555 A G 83 1_555 0.600 -0.022 -0.133 10.476 -9.590 -1.376 10 X_C9:G82_X X 9 ? X 82 ? 19 1 1 A A 11 1_555 A U 82 1_555 0.166 -0.021 -0.083 10.399 -11.032 -7.109 11 X_A10:U81_X X 10 ? X 81 ? 20 1 1 A G 13 1_555 A C 80 1_555 0.685 0.137 0.163 4.547 14.479 5.806 12 X_G12:C79_X X 12 ? X 79 ? 19 1 1 A G 14 1_555 A C 79 1_555 -0.087 0.138 0.133 4.641 10.798 4.708 13 X_G13:C78_X X 13 ? X 78 ? 19 1 1 A G 15 1_555 A C 78 1_555 -0.979 -0.177 0.113 5.544 -0.342 -0.595 14 X_G14:C77_X X 14 ? X 77 ? 19 1 1 A A 16 1_555 A U 77 1_555 -0.246 -0.078 -0.117 14.881 -10.826 14.403 15 X_A15:U76_X X 15 ? X 76 ? 20 1 1 A A 17 1_555 A U 76 1_555 0.214 -0.046 -0.103 -4.224 0.631 10.133 16 X_A16:U75_X X 16 ? X 75 ? 20 1 1 A A 20 1_555 A U 53 1_555 0.492 0.137 0.230 3.165 5.135 -7.178 17 X_A19:U52_X X 19 ? X 52 ? 20 1 1 A C 21 1_555 A G 52 1_555 0.429 -0.154 -1.003 38.820 13.583 -3.348 18 X_C20:G51_X X 20 ? X 51 ? 19 1 1 A G 22 1_555 A U 51 1_555 -2.405 -0.344 -0.088 -1.790 5.677 -0.689 19 X_G21:U50_X X 21 ? X 50 ? 28 1 1 A C 23 1_555 A G 50 1_555 -0.677 0.155 -0.085 9.815 10.597 5.823 20 X_C22:G49_X X 22 ? X 49 ? 19 1 1 A A 24 1_555 A U 49 1_555 0.350 0.256 0.001 1.179 -3.394 -1.367 21 X_A23:U48_X X 23 ? X 48 ? 20 1 1 A A 26 1_555 A U 48 1_555 -0.284 -0.215 0.337 -32.169 37.073 19.932 22 X_A25:U47_X X 25 ? X 47 ? 20 1 1 A U 27 1_555 A A 47 1_555 -0.211 0.218 -0.069 -15.730 13.738 -3.466 23 X_U26:A46_X X 26 ? X 46 ? 20 1 1 A C 28 1_555 A G 46 1_555 -0.206 -0.071 -0.497 9.318 31.105 -2.921 24 X_C27:G45_X X 27 ? X 45 ? 19 1 1 A A 33 1_555 A G 44 1_555 -5.841 -3.599 -2.418 2.254 49.405 13.559 25 X_A32:G43_X X 32 ? X 43 ? 11 6 1 A G 34 1_555 A C 43 1_555 0.264 -0.071 -0.582 -28.519 31.322 6.221 26 X_G33:C42_X X 33 ? X 42 ? 19 1 1 A G 35 1_555 A C 42 1_555 0.455 -0.174 -0.681 -21.075 40.420 -1.598 27 X_G34:C41_X X 34 ? X 41 ? 19 1 1 A A 36 1_555 A U 41 1_555 -0.159 -0.266 0.030 8.260 61.756 -8.928 28 X_A35:U40_X X 35 ? X 40 ? 20 1 1 A U 37 1_555 A G 40 1_555 -0.401 -5.756 -1.202 6.940 -6.351 -116.029 29 X_U36:G39_X X 36 ? X 39 ? ? 6 1 A U 57 1_555 A A 74 1_555 -0.146 0.032 -0.003 -5.053 -3.518 -3.966 30 X_U56:A73_X X 56 ? X 73 ? 20 1 1 A G 58 1_555 A C 73 1_555 -0.714 -0.119 -0.231 1.150 1.116 0.876 31 X_G57:C72_X X 57 ? X 72 ? 19 1 1 A C 59 1_555 A G 72 1_555 0.645 -0.094 -0.232 3.507 -5.935 -0.307 32 X_C58:G71_X X 58 ? X 71 ? 19 1 1 A U 60 1_555 A A 71 1_555 -0.104 -0.020 -0.112 -18.531 -3.115 6.247 33 X_U59:A70_X X 59 ? X 70 ? 20 1 1 A G 61 1_555 A C 70 1_555 -0.696 0.046 -0.301 -30.765 -9.093 -0.769 34 X_G60:C69_X X 60 ? X 69 ? 19 1 1 A G 62 1_555 A U 69 1_555 -2.443 -0.411 -0.526 0.186 3.812 -1.479 35 X_G61:U68_X X 61 ? X 68 ? 28 1 1 A U 63 1_555 A A 68 1_555 -0.530 0.152 0.185 28.390 31.389 -11.177 36 X_U62:A67_X X 62 ? X 67 ? 20 1 1 A G 64 1_555 A A 67 1_555 7.082 -5.298 0.026 20.724 1.216 -13.752 37 X_G63:A66_X X 63 ? X 66 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A U 92 1_555 A G 2 1_555 A C 91 1_555 -0.511 -0.572 4.944 -1.541 3.120 43.674 -1.215 0.464 4.909 4.186 2.067 43.805 1 XX_G0G1:C90U91_XX X 0 ? X 91 ? X 1 ? X 90 ? 1 A G 2 1_555 A C 91 1_555 A C 3 1_555 A G 90 1_555 -0.026 -1.359 2.594 -3.621 3.059 28.458 -3.254 -0.570 2.422 6.169 7.301 28.842 2 XX_G1C2:G89C90_XX X 1 ? X 90 ? X 2 ? X 89 ? 1 A C 3 1_555 A G 90 1_555 A C 4 1_555 A G 89 1_555 -0.957 -1.527 3.967 2.966 29.306 32.149 -5.058 1.598 1.906 43.291 -4.382 43.338 3 XX_C2C3:G88G89_XX X 2 ? X 89 ? X 3 ? X 88 ? 1 A C 4 1_555 A G 89 1_555 A U 5 1_555 A A 88 1_555 -0.260 -0.728 2.263 2.325 0.941 25.813 -1.799 1.020 2.204 2.100 -5.188 25.932 4 XX_C3U4:A87G88_XX X 3 ? X 88 ? X 4 ? X 87 ? 1 A U 5 1_555 A A 88 1_555 A U 6 1_555 A A 87 1_555 -1.239 -0.468 3.573 0.450 21.920 36.295 -3.047 1.770 2.843 31.870 -0.655 42.211 5 XX_U4U5:A86A87_XX X 4 ? X 87 ? X 5 ? X 86 ? 1 A U 6 1_555 A A 87 1_555 A A 7 1_555 A U 86 1_555 0.747 -0.609 3.394 1.392 11.576 38.163 -2.256 -0.932 3.112 17.220 -2.070 39.841 6 XX_U5A6:U85A86_XX X 5 ? X 86 ? X 6 ? X 85 ? 1 A A 7 1_555 A U 86 1_555 A U 8 1_555 A A 85 1_555 0.415 -1.161 3.872 0.417 33.774 32.139 -4.538 -0.490 1.906 47.640 -0.588 46.298 7 XX_A6U7:A84U85_XX X 6 ? X 85 ? X 7 ? X 84 ? 1 A U 8 1_555 A A 85 1_555 A G 9 1_555 A C 84 1_555 0.131 -0.523 3.173 0.019 -1.699 32.627 -0.643 -0.230 3.195 -3.021 -0.035 32.670 8 XX_U7G8:C83A84_XX X 7 ? X 84 ? X 8 ? X 83 ? 1 A G 9 1_555 A C 84 1_555 A C 10 1_555 A G 83 1_555 0.186 -1.062 3.574 0.153 7.886 34.335 -2.999 -0.284 3.259 13.144 -0.254 35.202 9 XX_G8C9:G82C83_XX X 8 ? X 83 ? X 9 ? X 82 ? 1 A C 10 1_555 A G 83 1_555 A A 11 1_555 A U 82 1_555 -0.115 -1.196 3.573 1.036 -0.121 31.302 -2.190 0.426 3.572 -0.224 -1.919 31.318 10 XX_C9A10:U81G82_XX X 9 ? X 82 ? X 10 ? X 81 ? 1 A G 13 1_555 A C 80 1_555 A G 14 1_555 A C 79 1_555 -0.122 -1.483 3.797 0.857 17.042 19.786 -7.949 0.505 1.928 41.076 -2.066 26.072 11 XX_G12G13:C78C79_XX X 12 ? X 79 ? X 13 ? X 78 ? 1 A G 14 1_555 A C 79 1_555 A G 15 1_555 A C 78 1_555 -0.408 -2.162 3.700 -3.934 13.134 17.016 -10.471 -0.348 1.673 37.453 11.218 21.821 12 XX_G13G14:C77C78_XX X 13 ? X 78 ? X 14 ? X 77 ? 1 A G 15 1_555 A C 78 1_555 A A 16 1_555 A U 77 1_555 1.554 -1.437 3.598 4.828 4.116 28.094 -3.912 -1.927 3.567 8.344 -9.788 28.787 13 XX_G14A15:U76C77_XX X 14 ? X 77 ? X 15 ? X 76 ? 1 A A 16 1_555 A U 77 1_555 A A 17 1_555 A U 76 1_555 0.158 -1.085 4.313 -2.714 12.026 33.782 -3.937 -0.747 3.702 19.890 4.490 35.899 14 XX_A15A16:U75U76_XX X 15 ? X 76 ? X 16 ? X 75 ? 1 A A 20 1_555 A U 53 1_555 A C 21 1_555 A G 52 1_555 0.138 -1.240 3.098 0.819 -14.790 27.076 0.692 -0.092 3.319 -28.998 -1.605 30.797 15 XX_A19C20:G51U52_XX X 19 ? X 52 ? X 20 ? X 51 ? 1 A C 21 1_555 A G 52 1_555 A G 22 1_555 A U 51 1_555 0.351 -2.062 6.175 -1.402 2.905 15.016 -11.914 -3.340 5.619 10.951 5.286 15.356 16 XX_C20G21:U50G51_XX X 20 ? X 51 ? X 21 ? X 50 ? 1 A G 22 1_555 A U 51 1_555 A C 23 1_555 A G 50 1_555 0.939 -1.908 3.472 -0.094 0.768 26.296 -4.409 -2.089 3.413 1.687 0.206 26.307 17 XX_G21C22:G49U50_XX X 21 ? X 50 ? X 22 ? X 49 ? 1 A C 23 1_555 A G 50 1_555 A A 24 1_555 A U 49 1_555 -0.559 -1.369 4.181 3.565 6.499 30.881 -3.969 1.826 3.736 11.989 -6.578 31.737 18 XX_C22A23:U48G49_XX X 22 ? X 49 ? X 23 ? X 48 ? 1 A A 24 1_555 A U 49 1_555 A A 26 1_555 A U 48 1_555 -0.799 -2.369 3.603 -10.172 42.464 41.702 -4.252 0.355 1.099 47.050 11.270 59.666 19 XX_A23A25:U47U48_XX X 23 ? X 48 ? X 25 ? X 47 ? 1 A A 26 1_555 A U 48 1_555 A U 27 1_555 A A 47 1_555 -0.912 -1.491 3.209 9.601 28.489 17.189 -5.586 2.572 0.143 57.715 -19.450 34.532 20 XX_A25U26:A46U47_XX X 25 ? X 47 ? X 26 ? X 46 ? 1 A U 27 1_555 A A 47 1_555 A C 28 1_555 A G 46 1_555 -0.157 -0.958 3.569 -2.941 10.113 16.150 -8.022 -1.031 2.521 31.947 9.291 19.262 21 XX_U26C27:G45A46_XX X 26 ? X 46 ? X 27 ? X 45 ? 1 A A 33 1_555 A G 44 1_555 A G 34 1_555 A C 43 1_555 -0.411 -1.318 5.412 -8.781 16.459 42.104 -3.982 -0.695 4.611 21.680 11.566 45.880 22 XX_A32G33:C42G43_XX X 32 ? X 43 ? X 33 ? X 42 ? 1 A G 34 1_555 A C 43 1_555 A G 35 1_555 A C 42 1_555 -0.985 -1.914 4.514 2.028 7.022 17.518 -10.371 4.307 3.364 21.860 -6.312 18.970 23 XX_G33G34:C41C42_XX X 33 ? X 42 ? X 34 ? X 41 ? 1 A G 35 1_555 A C 42 1_555 A A 36 1_555 A U 41 1_555 -1.904 -1.429 3.415 -2.847 11.873 15.222 -9.738 4.300 2.083 37.848 9.076 19.491 24 XX_G34A35:U40C41_XX X 34 ? X 41 ? X 35 ? X 40 ? 1 A A 36 1_555 A U 41 1_555 A U 37 1_555 A G 40 1_555 -0.761 -0.491 3.384 34.077 18.208 96.462 -0.595 1.012 2.990 11.864 -22.203 102.103 25 XX_A35U36:G39U40_XX X 35 ? X 40 ? X 36 ? X 39 ? 1 A U 57 1_555 A A 74 1_555 A G 58 1_555 A C 73 1_555 0.378 -1.156 3.705 -1.457 -1.677 27.556 -1.954 -1.194 3.742 -3.513 3.052 27.643 26 XX_U56G57:C72A73_XX X 56 ? X 73 ? X 57 ? X 72 ? 1 A G 58 1_555 A C 73 1_555 A C 59 1_555 A G 72 1_555 0.161 -1.236 3.700 0.866 -2.131 34.097 -1.719 -0.117 3.771 -3.629 -1.475 34.173 27 XX_G57C58:G71C72_XX X 57 ? X 72 ? X 58 ? X 71 ? 1 A C 59 1_555 A G 72 1_555 A U 60 1_555 A A 71 1_555 0.850 -1.821 4.374 -1.377 5.134 25.348 -5.882 -2.385 3.884 11.539 3.094 25.890 28 XX_C58U59:A70G71_XX X 58 ? X 71 ? X 59 ? X 70 ? 1 A U 60 1_555 A A 71 1_555 A G 61 1_555 A C 70 1_555 -0.441 -1.597 3.898 0.406 5.651 27.996 -4.708 0.999 3.508 11.532 -0.829 28.552 29 XX_U59G60:C69A70_XX X 59 ? X 70 ? X 60 ? X 69 ? 1 A G 61 1_555 A C 70 1_555 A G 62 1_555 A U 69 1_555 0.171 -1.810 2.459 2.182 12.451 19.483 -7.074 0.025 1.124 32.711 -5.732 23.191 30 XX_G60G61:U68C69_XX X 60 ? X 69 ? X 61 ? X 68 ? 1 A G 62 1_555 A U 69 1_555 A U 63 1_555 A A 68 1_555 -0.677 -1.481 2.798 -10.349 12.289 32.430 -3.801 -0.095 2.220 20.509 17.271 36.096 31 XX_G61U62:A67U68_XX X 61 ? X 68 ? X 62 ? X 67 ? 1 A U 63 1_555 A A 68 1_555 A G 64 1_555 A A 67 1_555 -1.375 -0.674 4.145 14.726 26.309 62.040 -1.798 1.896 3.305 24.079 -13.478 68.315 32 XX_U62G63:A66A67_XX X 62 ? X 67 ? X 63 ? X 66 ? #