data_2N9H # _entry.id 2N9H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104590 RCSB ? ? 2N9H PDB pdb_00002n9h 10.2210/pdb2n9h/pdb 25906 BMRB ? 10.13018/BMR25906 D_1000104590 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-31 2 'Structure model' 1 1 2020-07-29 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' pdbx_entity_src_syn 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' pdbx_nmr_spectrometer 5 2 'Structure model' struct_conn 6 3 'Structure model' chem_comp 7 3 'Structure model' database_2 8 3 'Structure model' pdbx_database_status 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.mon_nstd_flag' 2 2 'Structure model' '_chem_comp.type' 3 2 'Structure model' '_pdbx_nmr_software.name' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' 5 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_chem_comp.pdbx_synonyms' 7 3 'Structure model' '_database_2.pdbx_DOI' 8 3 'Structure model' '_database_2.pdbx_database_accession' 9 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 10 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N9H _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-11-25 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 25906 BMRB unspecified . 2N9F PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gomez-Pinto, I.' 1 'Vengut-Climent, E.' 2 'Lucas, R.' 3 'Avino, A.' 4 'Eritja, R.' 5 'Gonzalez-Ibanez, C.' 6 'Morales, J.' 7 'Muro, A.' 8 'Penalver, P.' 9 'Fonseca-Guerra, C.' 10 'Bickelhaupt, M.' 11 # _citation.id primary _citation.title 'Glucose-Nucleobase Pseudo Base Pairs: Biomolecular Interactions within DNA.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 55 _citation.page_first 8643 _citation.page_last 8647 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27328804 _citation.pdbx_database_id_DOI 10.1002/anie.201603510 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vengut-Climent, E.' 1 ? primary 'Gomez-Pinto, I.' 2 ? primary 'Lucas, R.' 3 ? primary 'Penalver, P.' 4 ? primary 'Avino, A.' 5 ? primary 'Fonseca Guerra, C.' 6 ? primary 'Bickelhaupt, F.M.' 7 ? primary 'Eritja, R.' 8 ? primary 'Gonzalez, C.' 9 ? primary 'Morales, J.C.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3') ; 3702.428 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3') ; 3609.373 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DA)(DT)(DG)(DA)(DC)(DT)(DG)(DC)(DT)(DA)(DG)' GATGACTGCTAG A ? 2 polydeoxyribonucleotide no yes '(DC)(DT)(DA)(DG)(DC)(4JA)(DG)(DT)(DC)(DA)(DT)(DC)' CTAGCXGTCATC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DT n 1 4 DG n 1 5 DA n 1 6 DC n 1 7 DT n 1 8 DG n 1 9 DC n 1 10 DT n 1 11 DA n 1 12 DG n 2 1 DC n 2 2 DT n 2 3 DA n 2 4 DG n 2 5 DC n 2 6 4JA n 2 7 DG n 2 8 DT n 2 9 DC n 2 10 DA n 2 11 DT n 2 12 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4JA D-saccharide n '(2S)-3-[(6-deoxy-beta-D-glucopyranosyl)oxy]-2-hydroxypropyl dihydrogen phosphate' ;(2S)-3-[(6-deoxy-beta-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate; (2S)-3-[(6-deoxy-D-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate; (2S)-3-[(6-deoxy-glucosyl)oxy]-2-hydroxypropyl dihydrogen phosphate ; 'C9 H19 O10 P' 318.215 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DG 12 12 12 DG DG A . n B 2 1 DC 1 13 13 DC DC B . n B 2 2 DT 2 14 14 DT DT B . n B 2 3 DA 3 15 15 DA DA B . n B 2 4 DG 4 16 16 DG DG B . n B 2 5 DC 5 17 17 DC DC B . n B 2 6 4JA 6 18 18 4JA GL6 B . n B 2 7 DG 7 19 19 DG DG B . n B 2 8 DT 8 20 20 DT DT B . n B 2 9 DC 9 21 21 DC DC B . n B 2 10 DA 10 22 22 DA DA B . n B 2 11 DT 11 23 23 DT DT B . n B 2 12 DC 12 24 24 DC DC B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N9H _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N9H _struct.title 'Glucose as a nuclease mimic in DNA' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N9H _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Carbohydrate-DNA interaction, Glucose-nucleobase, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2N9H 2N9H 1 ? ? ? 2 PDB 2N9H 2N9H 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2N9H A 1 ? 12 ? 2N9H 1 ? 12 ? 1 12 2 2 2N9H B 1 ? 12 ? 2N9H 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 5 "O3'" ? ? ? 1_555 B 4JA 6 P ? ? B DC 17 B 4JA 18 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale2 covale both ? B 4JA 6 "O3'" ? ? ? 1_555 B DG 7 P ? ? B 4JA 18 B DG 19 1_555 ? ? ? ? ? ? ? 1.616 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 11 N3 ? ? A DA 2 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 11 O4 ? ? A DA 2 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 11 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 11 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 O2 A DT 7 ? ? HO4 B 4JA 18 ? ? 1.46 2 7 O2 A DT 7 ? ? HO4 B 4JA 18 ? ? 1.57 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.47 117.00 -3.53 0.50 N 2 1 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.88 118.60 -3.72 0.60 N 3 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.52 122.90 -6.38 0.60 N 4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.23 108.30 1.93 0.30 N 5 1 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.72 117.00 -3.28 0.50 N 6 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.43 108.30 5.13 0.30 N 7 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.51 118.90 3.61 0.60 N 8 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.40 121.90 -4.50 0.70 N 9 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.86 108.30 4.56 0.30 N 10 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.97 122.90 -4.93 0.60 N 11 1 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 110.23 106.00 4.23 0.60 N 12 1 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.69 122.90 -4.21 0.60 N 13 1 C4 A DA 11 ? ? C5 A DA 11 ? ? C6 A DA 11 ? ? 113.99 117.00 -3.01 0.50 N 14 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.85 108.30 4.55 0.30 N 15 1 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 118.25 122.90 -4.65 0.60 N 16 1 "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? "C3'" B DA 15 ? ? 109.76 106.00 3.76 0.60 N 17 1 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 120.77 117.70 3.07 0.50 N 18 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.21 108.30 1.91 0.30 N 19 1 N3 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 117.67 121.90 -4.23 0.70 N 20 1 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.36 122.90 -4.54 0.60 N 21 1 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9 B DA 22 ? ? 110.14 108.30 1.84 0.30 N 22 1 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.78 117.00 -3.22 0.50 N 23 1 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 117.89 122.90 -5.01 0.60 N 24 1 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 111.94 108.30 3.64 0.30 N 25 2 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.49 117.00 -3.51 0.50 N 26 2 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.88 118.60 -3.72 0.60 N 27 2 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.20 122.90 -5.70 0.60 N 28 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.56 108.30 2.26 0.30 N 29 2 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.59 117.00 -3.41 0.50 N 30 2 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.72 118.60 -3.88 0.60 N 31 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.14 108.30 2.84 0.30 N 32 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.09 108.30 3.79 0.30 N 33 2 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 110.32 106.00 4.32 0.60 N 34 2 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.16 122.90 -4.74 0.60 N 35 2 C4 A DA 11 ? ? C5 A DA 11 ? ? C6 A DA 11 ? ? 113.96 117.00 -3.04 0.50 N 36 2 N1 A DA 11 ? ? C6 A DA 11 ? ? N6 A DA 11 ? ? 114.98 118.60 -3.62 0.60 N 37 2 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.96 108.30 4.66 0.30 N 38 2 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 118.21 122.90 -4.69 0.60 N 39 2 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 114.88 118.60 -3.72 0.60 N 40 2 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.72 108.30 2.42 0.30 N 41 2 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.10 122.90 -4.80 0.60 N 42 2 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.49 117.00 -3.51 0.50 N 43 2 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 114.79 118.60 -3.81 0.60 N 44 2 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 118.35 122.90 -4.55 0.60 N 45 2 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 111.67 108.30 3.37 0.30 N 46 3 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.53 117.00 -3.47 0.50 N 47 3 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 122.94 119.00 3.94 0.60 N 48 3 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.45 122.90 -6.45 0.60 N 49 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.56 108.30 2.26 0.30 N 50 3 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.40 117.00 -3.60 0.50 N 51 3 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.15 118.60 -4.45 0.60 N 52 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.78 108.30 2.48 0.30 N 53 3 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.76 118.90 3.86 0.60 N 54 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.16 108.30 3.86 0.30 N 55 3 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.68 122.90 -4.22 0.60 N 56 3 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 110.10 106.00 4.10 0.60 N 57 3 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.11 122.90 -4.79 0.60 N 58 3 C4 A DA 11 ? ? C5 A DA 11 ? ? C6 A DA 11 ? ? 113.82 117.00 -3.18 0.50 N 59 3 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.18 108.30 3.88 0.30 N 60 3 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 118.61 122.90 -4.29 0.60 N 61 3 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 114.50 118.60 -4.10 0.60 N 62 3 N1 B DG 19 ? ? C6 B DG 19 ? ? O6 B DG 19 ? ? 116.28 119.90 -3.62 0.60 N 63 3 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.45 122.90 -4.45 0.60 N 64 3 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.58 117.00 -3.42 0.50 N 65 3 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 114.68 118.60 -3.92 0.60 N 66 3 "O4'" B DT 23 ? ? "C4'" B DT 23 ? ? "C3'" B DT 23 ? ? 109.62 106.00 3.62 0.60 N 67 3 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 118.14 122.90 -4.76 0.60 N 68 3 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 111.81 108.30 3.51 0.30 N 69 4 "O4'" A DA 2 ? ? "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? 109.78 106.00 3.78 0.60 N 70 4 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.33 117.00 -3.67 0.50 N 71 4 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.14 122.90 -5.76 0.60 N 72 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.31 108.30 3.01 0.30 N 73 4 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.58 117.00 -3.42 0.50 N 74 4 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.18 118.60 -4.42 0.60 N 75 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.57 108.30 3.27 0.30 N 76 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.60 108.30 5.30 0.30 N 77 4 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 110.03 106.00 4.03 0.60 N 78 4 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.35 122.90 -4.55 0.60 N 79 4 C4 A DA 11 ? ? C5 A DA 11 ? ? C6 A DA 11 ? ? 113.85 117.00 -3.15 0.50 N 80 4 N1 A DA 11 ? ? C6 A DA 11 ? ? N6 A DA 11 ? ? 114.99 118.60 -3.61 0.60 N 81 4 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.86 108.30 4.56 0.30 N 82 4 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 122.64 119.00 3.64 0.60 N 83 4 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 117.29 122.90 -5.61 0.60 N 84 4 "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? "C3'" B DA 15 ? ? 109.68 106.00 3.68 0.60 N 85 4 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 120.71 117.70 3.01 0.50 N 86 4 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 114.63 118.60 -3.97 0.60 N 87 4 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.84 108.30 2.54 0.30 N 88 4 N1 B DG 19 ? ? C6 B DG 19 ? ? O6 B DG 19 ? ? 116.15 119.90 -3.75 0.60 N 89 4 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.68 122.90 -4.22 0.60 N 90 4 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.57 117.00 -3.43 0.50 N 91 4 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 114.69 118.60 -3.91 0.60 N 92 4 "O4'" B DT 23 ? ? "C4'" B DT 23 ? ? "C3'" B DT 23 ? ? 109.62 106.00 3.62 0.60 N 93 4 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 117.72 122.90 -5.18 0.60 N 94 4 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 112.24 108.30 3.94 0.30 N 95 5 "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 97.78 102.20 -4.42 0.70 N 96 5 "O4'" A DA 2 ? ? "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? 109.88 106.00 3.88 0.60 N 97 5 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.50 117.00 -3.50 0.50 N 98 5 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.93 118.60 -3.67 0.60 N 99 5 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.16 122.90 -5.74 0.60 N 100 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.22 108.30 2.92 0.30 N 101 5 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.50 117.00 -3.50 0.50 N 102 5 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.15 118.60 -4.45 0.60 N 103 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.50 108.30 3.20 0.30 N 104 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.20 108.30 4.90 0.30 N 105 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.24 122.90 -3.66 0.60 N 106 5 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 109.87 106.00 3.87 0.60 N 107 5 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.19 122.90 -4.71 0.60 N 108 5 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.92 108.30 4.62 0.30 N 109 5 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 118.28 122.90 -4.62 0.60 N 110 5 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 117.83 122.90 -5.07 0.60 N 111 5 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.69 117.00 -3.31 0.50 N 112 5 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 114.87 118.60 -3.73 0.60 N 113 5 "O4'" B DT 23 ? ? "C4'" B DT 23 ? ? "C3'" B DT 23 ? ? 109.63 106.00 3.63 0.60 N 114 5 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 118.18 122.90 -4.72 0.60 N 115 5 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 111.97 108.30 3.67 0.30 N 116 6 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.37 117.00 -3.63 0.50 N 117 6 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.82 118.60 -3.78 0.60 N 118 6 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.41 119.00 4.41 0.60 N 119 6 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 115.80 122.90 -7.10 0.60 N 120 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.92 108.30 2.62 0.30 N 121 6 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 116.06 119.90 -3.84 0.60 N 122 6 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.69 117.00 -3.31 0.50 N 123 6 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.61 118.60 -3.99 0.60 N 124 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.43 108.30 3.13 0.30 N 125 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.15 108.30 3.85 0.30 N 126 6 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 109.99 106.00 3.99 0.60 N 127 6 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.43 122.90 -4.47 0.60 N 128 6 C4 A DA 11 ? ? C5 A DA 11 ? ? C6 A DA 11 ? ? 113.67 117.00 -3.33 0.50 N 129 6 C5 A DA 11 ? ? C6 A DA 11 ? ? N1 A DA 11 ? ? 120.74 117.70 3.04 0.50 N 130 6 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.14 108.30 3.84 0.30 N 131 6 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 117.47 122.90 -5.43 0.60 N 132 6 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 120.87 117.70 3.17 0.50 N 133 6 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 114.13 118.60 -4.47 0.60 N 134 6 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 111.45 108.30 3.15 0.30 N 135 6 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.46 122.90 -4.44 0.60 N 136 6 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9 B DA 22 ? ? 110.48 108.30 2.18 0.30 N 137 6 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.46 117.00 -3.54 0.50 N 138 6 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 114.36 118.60 -4.24 0.60 N 139 6 "O4'" B DT 23 ? ? "C4'" B DT 23 ? ? "C3'" B DT 23 ? ? 109.67 106.00 3.67 0.60 N 140 6 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 117.85 122.90 -5.05 0.60 N 141 6 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 112.54 108.30 4.24 0.30 N 142 7 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.44 117.00 -3.56 0.50 N 143 7 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.05 119.00 4.05 0.60 N 144 7 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.13 122.90 -6.77 0.60 N 145 7 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.56 108.30 2.26 0.30 N 146 7 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.63 117.00 -3.37 0.50 N 147 7 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.42 118.60 -4.18 0.60 N 148 7 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.31 108.30 3.01 0.30 N 149 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.21 108.30 3.91 0.30 N 150 7 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.72 122.90 -4.18 0.60 N 151 7 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 109.72 106.00 3.72 0.60 N 152 7 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.18 122.90 -4.72 0.60 N 153 7 C4 A DA 11 ? ? C5 A DA 11 ? ? C6 A DA 11 ? ? 113.95 117.00 -3.05 0.50 N 154 7 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 113.41 108.30 5.11 0.30 N 155 7 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 118.14 122.90 -4.76 0.60 N 156 7 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 120.71 117.70 3.01 0.50 N 157 7 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 114.87 118.60 -3.73 0.60 N 158 7 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.23 108.30 1.93 0.30 N 159 7 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 117.63 122.90 -5.27 0.60 N 160 7 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9 B DA 22 ? ? 110.15 108.30 1.85 0.30 N 161 7 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.56 117.00 -3.44 0.50 N 162 7 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 114.49 118.60 -4.11 0.60 N 163 7 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 118.30 122.90 -4.60 0.60 N 164 7 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 111.52 108.30 3.22 0.30 N 165 8 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.40 117.00 -3.60 0.50 N 166 8 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 122.74 119.00 3.74 0.60 N 167 8 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.72 122.90 -6.18 0.60 N 168 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.92 108.30 2.62 0.30 N 169 8 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.46 117.00 -3.54 0.50 N 170 8 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.53 118.60 -4.07 0.60 N 171 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.97 108.30 2.67 0.30 N 172 8 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.58 118.90 3.68 0.60 N 173 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.51 108.30 4.21 0.30 N 174 8 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.96 122.90 -3.94 0.60 N 175 8 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.07 122.90 -4.83 0.60 N 176 8 C4 A DA 11 ? ? C5 A DA 11 ? ? C6 A DA 11 ? ? 113.96 117.00 -3.04 0.50 N 177 8 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.93 108.30 4.63 0.30 N 178 8 C4 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 122.91 119.00 3.91 0.60 N 179 8 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 117.34 122.90 -5.56 0.60 N 180 8 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 120.74 117.70 3.04 0.50 N 181 8 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 114.95 118.60 -3.65 0.60 N 182 8 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.07 122.90 -4.83 0.60 N 183 8 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9 B DA 22 ? ? 110.11 108.30 1.81 0.30 N 184 8 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.61 117.00 -3.39 0.50 N 185 8 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 114.68 118.60 -3.92 0.60 N 186 8 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 118.01 122.90 -4.89 0.60 N 187 8 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 111.93 108.30 3.63 0.30 N 188 9 "O4'" A DA 2 ? ? "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? 109.79 106.00 3.79 0.60 N 189 9 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.47 117.00 -3.53 0.50 N 190 9 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.79 118.60 -3.81 0.60 N 191 9 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.12 122.90 -5.78 0.60 N 192 9 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.17 108.30 2.87 0.30 N 193 9 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.60 117.00 -3.40 0.50 N 194 9 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.44 118.60 -4.16 0.60 N 195 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.17 108.30 2.87 0.30 N 196 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.85 108.30 4.55 0.30 N 197 9 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 109.65 106.00 3.65 0.60 N 198 9 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.21 122.90 -4.69 0.60 N 199 9 C4 A DA 11 ? ? C5 A DA 11 ? ? C6 A DA 11 ? ? 113.91 117.00 -3.09 0.50 N 200 9 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 113.44 108.30 5.14 0.30 N 201 9 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 118.41 122.90 -4.49 0.60 N 202 9 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 114.82 118.60 -3.78 0.60 N 203 9 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.13 108.30 1.83 0.30 N 204 9 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 111.96 108.30 3.66 0.30 N 205 9 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.56 122.90 -4.34 0.60 N 206 9 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.53 117.00 -3.47 0.50 N 207 9 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 114.41 118.60 -4.19 0.60 N 208 9 C4 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 122.63 119.00 3.63 0.60 N 209 9 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 117.51 122.90 -5.39 0.60 N 210 9 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 112.15 108.30 3.85 0.30 N 211 10 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.40 117.00 -3.60 0.50 N 212 10 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 123.05 119.00 4.05 0.60 N 213 10 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.02 122.90 -6.88 0.60 N 214 10 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.83 108.30 2.53 0.30 N 215 10 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.69 117.00 -3.31 0.50 N 216 10 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.87 118.60 -3.73 0.60 N 217 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.99 108.30 2.69 0.30 N 218 10 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.61 118.90 3.71 0.60 N 219 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.95 108.30 4.65 0.30 N 220 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.96 122.90 -3.94 0.60 N 221 10 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 109.82 106.00 3.82 0.60 N 222 10 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.53 122.90 -4.37 0.60 N 223 10 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.48 108.30 4.18 0.30 N 224 10 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 118.60 122.90 -4.30 0.60 N 225 10 "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? "C3'" B DA 15 ? ? 109.80 106.00 3.80 0.60 N 226 10 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 120.79 117.70 3.09 0.50 N 227 10 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.12 108.30 1.82 0.30 N 228 10 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 111.13 108.30 2.83 0.30 N 229 10 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 118.31 122.90 -4.59 0.60 N 230 10 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 113.60 117.00 -3.40 0.50 N 231 10 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 114.69 118.60 -3.91 0.60 N 232 10 C6 B DT 23 ? ? C5 B DT 23 ? ? C7 B DT 23 ? ? 118.03 122.90 -4.87 0.60 N 233 10 "O4'" B DC 24 ? ? "C1'" B DC 24 ? ? N1 B DC 24 ? ? 112.30 108.30 4.00 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 5 ? ? 0.063 'SIDE CHAIN' 2 1 DC A 6 ? ? 0.072 'SIDE CHAIN' 3 1 DG A 12 ? ? 0.082 'SIDE CHAIN' 4 2 DA A 5 ? ? 0.077 'SIDE CHAIN' 5 2 DC A 6 ? ? 0.069 'SIDE CHAIN' 6 2 DG A 12 ? ? 0.059 'SIDE CHAIN' 7 2 DC B 13 ? ? 0.066 'SIDE CHAIN' 8 3 DA A 5 ? ? 0.070 'SIDE CHAIN' 9 3 DC A 6 ? ? 0.080 'SIDE CHAIN' 10 3 DG A 12 ? ? 0.059 'SIDE CHAIN' 11 3 DC B 13 ? ? 0.069 'SIDE CHAIN' 12 3 DC B 21 ? ? 0.061 'SIDE CHAIN' 13 4 DA A 5 ? ? 0.090 'SIDE CHAIN' 14 4 DC A 6 ? ? 0.086 'SIDE CHAIN' 15 4 DG A 12 ? ? 0.055 'SIDE CHAIN' 16 4 DC B 13 ? ? 0.061 'SIDE CHAIN' 17 4 DC B 21 ? ? 0.059 'SIDE CHAIN' 18 5 DA A 5 ? ? 0.085 'SIDE CHAIN' 19 5 DC A 6 ? ? 0.077 'SIDE CHAIN' 20 5 DG A 12 ? ? 0.060 'SIDE CHAIN' 21 5 DC B 21 ? ? 0.071 'SIDE CHAIN' 22 6 DA A 5 ? ? 0.089 'SIDE CHAIN' 23 6 DC A 6 ? ? 0.072 'SIDE CHAIN' 24 6 DG A 12 ? ? 0.048 'SIDE CHAIN' 25 6 DC B 13 ? ? 0.058 'SIDE CHAIN' 26 6 DC B 21 ? ? 0.063 'SIDE CHAIN' 27 7 DA A 5 ? ? 0.074 'SIDE CHAIN' 28 7 DC A 6 ? ? 0.077 'SIDE CHAIN' 29 7 DG A 12 ? ? 0.073 'SIDE CHAIN' 30 7 DC B 13 ? ? 0.059 'SIDE CHAIN' 31 7 DC B 21 ? ? 0.061 'SIDE CHAIN' 32 8 DA A 5 ? ? 0.076 'SIDE CHAIN' 33 8 DC A 6 ? ? 0.072 'SIDE CHAIN' 34 8 DG A 12 ? ? 0.068 'SIDE CHAIN' 35 8 DC B 13 ? ? 0.071 'SIDE CHAIN' 36 8 DC B 21 ? ? 0.060 'SIDE CHAIN' 37 9 DA A 5 ? ? 0.079 'SIDE CHAIN' 38 9 DC A 6 ? ? 0.067 'SIDE CHAIN' 39 9 DG A 12 ? ? 0.058 'SIDE CHAIN' 40 9 DG B 19 ? ? 0.073 'SIDE CHAIN' 41 10 DA A 5 ? ? 0.084 'SIDE CHAIN' 42 10 DC A 6 ? ? 0.058 'SIDE CHAIN' 43 10 DG B 19 ? ? 0.081 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N9H _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N9H _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents ;1 mM DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3'), 1 mM DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3'), 1 mM SUGAR, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3')-1 ; 1 ? mM ? 1 ;DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3')-2 ; 1 ? mM ? 1 SUGAR-3 1 ? mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 'Potassium phosphate' _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 279.6 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-1H COSY' # _pdbx_nmr_details.entry_id 2N9H _pdbx_nmr_details.text 'The structure was determined using NOE data' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2N9H _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 409 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 197 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count 25 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 157 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2N9H _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' refinement Amber ? 1 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' 'chemical shift assignment' Amber ? 2 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' processing Amber ? 3 Goddard refinement Sparky ? 4 Goddard 'chemical shift assignment' Sparky ? 5 Goddard processing Sparky ? 6 'Bruker Biospin' refinement Amber ? 7 'Bruker Biospin' 'chemical shift assignment' Amber ? 8 'Bruker Biospin' processing Amber ? 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4JA P P N N 1 4JA O2 O N N 2 4JA O3 O N N 3 4JA O4 O N N 4 4JA O5 O N N 5 4JA C1 C N R 6 4JA C2 C N R 7 4JA C3 C N S 8 4JA C4 C N S 9 4JA C5 C N R 10 4JA C6 C N N 11 4JA OP1 O N N 12 4JA OP2 O N N 13 4JA "O5'" O N N 14 4JA "C5'" C N N 15 4JA "C3'" C N S 16 4JA "C2'" C N N 17 4JA O1 O N N 18 4JA "O3'" O N N 19 4JA HO2 H N N 20 4JA HO3 H N N 21 4JA HO4 H N N 22 4JA H1 H N N 23 4JA H2 H N N 24 4JA H3 H N N 25 4JA H4 H N N 26 4JA H5 H N N 27 4JA H61 H N N 28 4JA H62 H N N 29 4JA H63 H N N 30 4JA HOP2 H N N 31 4JA "H5''" H N N 32 4JA "H5'" H N N 33 4JA "H3'" H N N 34 4JA "H2''" H N N 35 4JA "H2'" H N N 36 4JA "HO3'" H N N 37 4JA OP3 O N N 38 4JA HOP3 H N N 39 DA OP3 O N N 40 DA P P N N 41 DA OP1 O N N 42 DA OP2 O N N 43 DA "O5'" O N N 44 DA "C5'" C N N 45 DA "C4'" C N R 46 DA "O4'" O N N 47 DA "C3'" C N S 48 DA "O3'" O N N 49 DA "C2'" C N N 50 DA "C1'" C N R 51 DA N9 N Y N 52 DA C8 C Y N 53 DA N7 N Y N 54 DA C5 C Y N 55 DA C6 C Y N 56 DA N6 N N N 57 DA N1 N Y N 58 DA C2 C Y N 59 DA N3 N Y N 60 DA C4 C Y N 61 DA HOP3 H N N 62 DA HOP2 H N N 63 DA "H5'" H N N 64 DA "H5''" H N N 65 DA "H4'" H N N 66 DA "H3'" H N N 67 DA "HO3'" H N N 68 DA "H2'" H N N 69 DA "H2''" H N N 70 DA "H1'" H N N 71 DA H8 H N N 72 DA H61 H N N 73 DA H62 H N N 74 DA H2 H N N 75 DC OP3 O N N 76 DC P P N N 77 DC OP1 O N N 78 DC OP2 O N N 79 DC "O5'" O N N 80 DC "C5'" C N N 81 DC "C4'" C N R 82 DC "O4'" O N N 83 DC "C3'" C N S 84 DC "O3'" O N N 85 DC "C2'" C N N 86 DC "C1'" C N R 87 DC N1 N N N 88 DC C2 C N N 89 DC O2 O N N 90 DC N3 N N N 91 DC C4 C N N 92 DC N4 N N N 93 DC C5 C N N 94 DC C6 C N N 95 DC HOP3 H N N 96 DC HOP2 H N N 97 DC "H5'" H N N 98 DC "H5''" H N N 99 DC "H4'" H N N 100 DC "H3'" H N N 101 DC "HO3'" H N N 102 DC "H2'" H N N 103 DC "H2''" H N N 104 DC "H1'" H N N 105 DC H41 H N N 106 DC H42 H N N 107 DC H5 H N N 108 DC H6 H N N 109 DG OP3 O N N 110 DG P P N N 111 DG OP1 O N N 112 DG OP2 O N N 113 DG "O5'" O N N 114 DG "C5'" C N N 115 DG "C4'" C N R 116 DG "O4'" O N N 117 DG "C3'" C N S 118 DG "O3'" O N N 119 DG "C2'" C N N 120 DG "C1'" C N R 121 DG N9 N Y N 122 DG C8 C Y N 123 DG N7 N Y N 124 DG C5 C Y N 125 DG C6 C N N 126 DG O6 O N N 127 DG N1 N N N 128 DG C2 C N N 129 DG N2 N N N 130 DG N3 N N N 131 DG C4 C Y N 132 DG HOP3 H N N 133 DG HOP2 H N N 134 DG "H5'" H N N 135 DG "H5''" H N N 136 DG "H4'" H N N 137 DG "H3'" H N N 138 DG "HO3'" H N N 139 DG "H2'" H N N 140 DG "H2''" H N N 141 DG "H1'" H N N 142 DG H8 H N N 143 DG H1 H N N 144 DG H21 H N N 145 DG H22 H N N 146 DT OP3 O N N 147 DT P P N N 148 DT OP1 O N N 149 DT OP2 O N N 150 DT "O5'" O N N 151 DT "C5'" C N N 152 DT "C4'" C N R 153 DT "O4'" O N N 154 DT "C3'" C N S 155 DT "O3'" O N N 156 DT "C2'" C N N 157 DT "C1'" C N R 158 DT N1 N N N 159 DT C2 C N N 160 DT O2 O N N 161 DT N3 N N N 162 DT C4 C N N 163 DT O4 O N N 164 DT C5 C N N 165 DT C7 C N N 166 DT C6 C N N 167 DT HOP3 H N N 168 DT HOP2 H N N 169 DT "H5'" H N N 170 DT "H5''" H N N 171 DT "H4'" H N N 172 DT "H3'" H N N 173 DT "HO3'" H N N 174 DT "H2'" H N N 175 DT "H2''" H N N 176 DT "H1'" H N N 177 DT H3 H N N 178 DT H71 H N N 179 DT H72 H N N 180 DT H73 H N N 181 DT H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4JA OP2 P sing N N 1 4JA C6 C5 sing N N 2 4JA P "O5'" sing N N 3 4JA P OP1 doub N N 4 4JA "O5'" "C5'" sing N N 5 4JA C5 O5 sing N N 6 4JA C5 C4 sing N N 7 4JA O5 C1 sing N N 8 4JA "C5'" "C3'" sing N N 9 4JA "C3'" "C2'" sing N N 10 4JA "C3'" "O3'" sing N N 11 4JA "C2'" O1 sing N N 12 4JA O4 C4 sing N N 13 4JA C4 C3 sing N N 14 4JA C1 O1 sing N N 15 4JA C1 C2 sing N N 16 4JA C3 C2 sing N N 17 4JA C3 O3 sing N N 18 4JA C2 O2 sing N N 19 4JA O2 HO2 sing N N 20 4JA O3 HO3 sing N N 21 4JA O4 HO4 sing N N 22 4JA C1 H1 sing N N 23 4JA C2 H2 sing N N 24 4JA C3 H3 sing N N 25 4JA C4 H4 sing N N 26 4JA C5 H5 sing N N 27 4JA C6 H61 sing N N 28 4JA C6 H62 sing N N 29 4JA C6 H63 sing N N 30 4JA OP2 HOP2 sing N N 31 4JA "C5'" "H5''" sing N N 32 4JA "C5'" "H5'" sing N N 33 4JA "C3'" "H3'" sing N N 34 4JA "C2'" "H2''" sing N N 35 4JA "C2'" "H2'" sing N N 36 4JA "O3'" "HO3'" sing N N 37 4JA P OP3 sing N N 38 4JA OP3 HOP3 sing N N 39 DA OP3 P sing N N 40 DA OP3 HOP3 sing N N 41 DA P OP1 doub N N 42 DA P OP2 sing N N 43 DA P "O5'" sing N N 44 DA OP2 HOP2 sing N N 45 DA "O5'" "C5'" sing N N 46 DA "C5'" "C4'" sing N N 47 DA "C5'" "H5'" sing N N 48 DA "C5'" "H5''" sing N N 49 DA "C4'" "O4'" sing N N 50 DA "C4'" "C3'" sing N N 51 DA "C4'" "H4'" sing N N 52 DA "O4'" "C1'" sing N N 53 DA "C3'" "O3'" sing N N 54 DA "C3'" "C2'" sing N N 55 DA "C3'" "H3'" sing N N 56 DA "O3'" "HO3'" sing N N 57 DA "C2'" "C1'" sing N N 58 DA "C2'" "H2'" sing N N 59 DA "C2'" "H2''" sing N N 60 DA "C1'" N9 sing N N 61 DA "C1'" "H1'" sing N N 62 DA N9 C8 sing Y N 63 DA N9 C4 sing Y N 64 DA C8 N7 doub Y N 65 DA C8 H8 sing N N 66 DA N7 C5 sing Y N 67 DA C5 C6 sing Y N 68 DA C5 C4 doub Y N 69 DA C6 N6 sing N N 70 DA C6 N1 doub Y N 71 DA N6 H61 sing N N 72 DA N6 H62 sing N N 73 DA N1 C2 sing Y N 74 DA C2 N3 doub Y N 75 DA C2 H2 sing N N 76 DA N3 C4 sing Y N 77 DC OP3 P sing N N 78 DC OP3 HOP3 sing N N 79 DC P OP1 doub N N 80 DC P OP2 sing N N 81 DC P "O5'" sing N N 82 DC OP2 HOP2 sing N N 83 DC "O5'" "C5'" sing N N 84 DC "C5'" "C4'" sing N N 85 DC "C5'" "H5'" sing N N 86 DC "C5'" "H5''" sing N N 87 DC "C4'" "O4'" sing N N 88 DC "C4'" "C3'" sing N N 89 DC "C4'" "H4'" sing N N 90 DC "O4'" "C1'" sing N N 91 DC "C3'" "O3'" sing N N 92 DC "C3'" "C2'" sing N N 93 DC "C3'" "H3'" sing N N 94 DC "O3'" "HO3'" sing N N 95 DC "C2'" "C1'" sing N N 96 DC "C2'" "H2'" sing N N 97 DC "C2'" "H2''" sing N N 98 DC "C1'" N1 sing N N 99 DC "C1'" "H1'" sing N N 100 DC N1 C2 sing N N 101 DC N1 C6 sing N N 102 DC C2 O2 doub N N 103 DC C2 N3 sing N N 104 DC N3 C4 doub N N 105 DC C4 N4 sing N N 106 DC C4 C5 sing N N 107 DC N4 H41 sing N N 108 DC N4 H42 sing N N 109 DC C5 C6 doub N N 110 DC C5 H5 sing N N 111 DC C6 H6 sing N N 112 DG OP3 P sing N N 113 DG OP3 HOP3 sing N N 114 DG P OP1 doub N N 115 DG P OP2 sing N N 116 DG P "O5'" sing N N 117 DG OP2 HOP2 sing N N 118 DG "O5'" "C5'" sing N N 119 DG "C5'" "C4'" sing N N 120 DG "C5'" "H5'" sing N N 121 DG "C5'" "H5''" sing N N 122 DG "C4'" "O4'" sing N N 123 DG "C4'" "C3'" sing N N 124 DG "C4'" "H4'" sing N N 125 DG "O4'" "C1'" sing N N 126 DG "C3'" "O3'" sing N N 127 DG "C3'" "C2'" sing N N 128 DG "C3'" "H3'" sing N N 129 DG "O3'" "HO3'" sing N N 130 DG "C2'" "C1'" sing N N 131 DG "C2'" "H2'" sing N N 132 DG "C2'" "H2''" sing N N 133 DG "C1'" N9 sing N N 134 DG "C1'" "H1'" sing N N 135 DG N9 C8 sing Y N 136 DG N9 C4 sing Y N 137 DG C8 N7 doub Y N 138 DG C8 H8 sing N N 139 DG N7 C5 sing Y N 140 DG C5 C6 sing N N 141 DG C5 C4 doub Y N 142 DG C6 O6 doub N N 143 DG C6 N1 sing N N 144 DG N1 C2 sing N N 145 DG N1 H1 sing N N 146 DG C2 N2 sing N N 147 DG C2 N3 doub N N 148 DG N2 H21 sing N N 149 DG N2 H22 sing N N 150 DG N3 C4 sing N N 151 DT OP3 P sing N N 152 DT OP3 HOP3 sing N N 153 DT P OP1 doub N N 154 DT P OP2 sing N N 155 DT P "O5'" sing N N 156 DT OP2 HOP2 sing N N 157 DT "O5'" "C5'" sing N N 158 DT "C5'" "C4'" sing N N 159 DT "C5'" "H5'" sing N N 160 DT "C5'" "H5''" sing N N 161 DT "C4'" "O4'" sing N N 162 DT "C4'" "C3'" sing N N 163 DT "C4'" "H4'" sing N N 164 DT "O4'" "C1'" sing N N 165 DT "C3'" "O3'" sing N N 166 DT "C3'" "C2'" sing N N 167 DT "C3'" "H3'" sing N N 168 DT "O3'" "HO3'" sing N N 169 DT "C2'" "C1'" sing N N 170 DT "C2'" "H2'" sing N N 171 DT "C2'" "H2''" sing N N 172 DT "C1'" N1 sing N N 173 DT "C1'" "H1'" sing N N 174 DT N1 C2 sing N N 175 DT N1 C6 sing N N 176 DT C2 O2 doub N N 177 DT C2 N3 sing N N 178 DT N3 C4 sing N N 179 DT N3 H3 sing N N 180 DT C4 O4 doub N N 181 DT C4 C5 sing N N 182 DT C5 C7 sing N N 183 DT C5 C6 doub N N 184 DT C7 H71 sing N N 185 DT C7 H72 sing N N 186 DT C7 H73 sing N N 187 DT C6 H6 sing N N 188 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2N9H 'double helix' 2N9H 'b-form double helix' 2N9H 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 12 1_555 -0.396 -0.151 0.288 26.850 0.265 -0.473 1 A_DG1:DC24_B A 1 ? B 24 ? 19 1 1 A DA 2 1_555 B DT 11 1_555 0.080 -0.086 0.005 10.916 -14.170 1.857 2 A_DA2:DT23_B A 2 ? B 23 ? 20 1 1 A DT 3 1_555 B DA 10 1_555 0.054 -0.090 0.008 1.135 -15.219 -0.698 3 A_DT3:DA22_B A 3 ? B 22 ? 20 1 1 A DG 4 1_555 B DC 9 1_555 -0.350 -0.246 0.224 -4.501 -11.861 -1.859 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.024 -0.131 0.413 -7.506 -4.632 0.365 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DC 6 1_555 B DG 7 1_555 0.066 -0.168 0.529 -6.497 1.285 -2.264 6 A_DC6:DG19_B A 6 ? B 19 ? 19 1 1 A DG 8 1_555 B DC 5 1_555 -0.129 -0.163 -0.512 -12.461 3.375 -0.329 7 A_DG8:DC17_B A 8 ? B 17 ? 19 1 1 A DC 9 1_555 B DG 4 1_555 -0.184 -0.159 0.335 -4.827 -5.607 -1.059 8 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 0.005 -0.122 0.161 -1.361 -4.199 -3.293 9 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DA 11 1_555 B DT 2 1_555 -0.079 -0.148 0.228 5.483 -12.961 -2.408 10 A_DA11:DT14_B A 11 ? B 14 ? 20 1 1 A DG 12 1_555 B DC 1 1_555 -0.301 -0.239 0.127 -3.583 -8.548 -1.222 11 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 12 1_555 A DA 2 1_555 B DT 11 1_555 -0.394 -0.689 3.695 -1.061 4.650 33.408 -2.031 0.486 3.580 8.037 1.834 33.737 1 AA_DG1DA2:DT23DC24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DA 2 1_555 B DT 11 1_555 A DT 3 1_555 B DA 10 1_555 -0.100 -0.934 3.416 -1.206 2.538 36.324 -1.858 -0.014 3.347 4.063 1.931 36.429 2 AA_DA2DT3:DA22DT23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DT 3 1_555 B DA 10 1_555 A DG 4 1_555 B DC 9 1_555 0.120 -0.810 3.187 -2.349 9.518 31.192 -2.989 -0.595 2.809 17.177 4.240 32.660 3 AA_DT3DG4:DC21DA22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.114 -0.072 3.255 -2.484 2.882 41.087 -0.410 -0.428 3.231 4.095 3.530 41.256 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DC 6 1_555 B DG 7 1_555 0.157 -0.836 3.300 -0.642 -0.034 32.083 -1.507 -0.399 3.298 -0.062 1.161 32.089 5 AA_DA5DC6:DG19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DC 6 1_555 B DG 7 1_555 A DG 8 1_555 B DC 5 1_555 -0.157 -0.685 6.965 11.020 13.034 69.262 -1.541 0.940 6.679 11.295 -9.550 71.079 6 AA_DC6DG8:DC17DG19_BB A 6 ? B 19 ? A 8 ? B 17 ? 1 A DG 8 1_555 B DC 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.059 0.106 3.071 -8.193 5.059 30.169 -0.690 -1.324 2.964 9.422 15.259 31.635 7 AA_DG8DC9:DG16DC17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 0.005 -0.492 3.132 2.202 2.887 36.425 -1.162 0.281 3.080 4.605 -3.512 36.599 8 AA_DC9DT10:DA15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 3 1_555 A DA 11 1_555 B DT 2 1_555 0.257 -0.862 2.940 0.396 12.530 28.343 -3.670 -0.417 2.360 24.151 -0.763 30.940 9 AA_DT10DA11:DT14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DA 11 1_555 B DT 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.152 -0.889 3.389 -1.650 3.615 32.458 -2.219 -0.021 3.277 6.437 2.938 32.694 10 AA_DA11DG12:DC13DT14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' # _atom_sites.entry_id 2N9H _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_