HEADER CHAPERONE 03-NOV-06 2NSA TITLE STRUCTURES OF AND INTERACTIONS BETWEEN DOMAINS OF TRIGGER FACTOR FROM TITLE 2 THEMOTOGA MARITIM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIGGER FACTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TIG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RIL CODON-PLUS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR E.MARTINEZ-HACKERT,W.A.HENDRICKSON REVDAT 5 27-DEC-23 2NSA 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2NSA 1 VERSN REVDAT 3 24-FEB-09 2NSA 1 VERSN REVDAT 2 20-MAY-08 2NSA 1 JRNL REVDAT 1 27-MAR-07 2NSA 0 JRNL AUTH E.MARTINEZ-HACKERT,W.A.HENDRICKSON JRNL TITL STRUCTURES OF AND INTERACTIONS BETWEEN DOMAINS OF TRIGGER JRNL TITL 2 FACTOR FROM THERMOTOGA MARITIMA. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 536 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17372359 JRNL DOI 10.1107/S090744490700964X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 19614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1003 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98700 REMARK 3 B22 (A**2) : 0.27200 REMARK 3 B33 (A**2) : 0.71500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 0.889 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NSA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-02; 26-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100; 110 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : NSLS; ROTATING ANODE REMARK 200 BEAMLINE : X4A; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900; 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 WITH A SAGITTALLY FOCUSED SECOND REMARK 200 CRYSTAL.; LAB DESIGNED MIRRORS REMARK 200 OPTICS : MONOCHROMATOR; MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20170 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.15700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS + NATIVE ANOMALOUS REMARK 200 SOFTWARE USED: SOLVE, RESOLVE 2.08 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.35M AMMONIUM SULFATE 0.05M TRISCL, REMARK 280 PH 7.4, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.03500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.03500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.92000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.10500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.92000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.03500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.92000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.10500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.03500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.92000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.10500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.03500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 243 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 415 DBREF 2NSA A 244 405 UNP Q9WZF8 TIG_THEMA 244 405 SEQADV 2NSA GLY A 243 UNP Q9WZF8 CLONING ARTIFACT SEQADV 2NSA MSE A 267 UNP Q9WZF8 MET 267 MODIFIED RESIDUE SEQADV 2NSA MSE A 271 UNP Q9WZF8 MET 271 MODIFIED RESIDUE SEQADV 2NSA GLU A 406 UNP Q9WZF8 CLONING ARTIFACT SEQADV 2NSA HIS A 407 UNP Q9WZF8 EXPRESSION TAG SEQADV 2NSA HIS A 408 UNP Q9WZF8 EXPRESSION TAG SEQADV 2NSA HIS A 409 UNP Q9WZF8 EXPRESSION TAG SEQADV 2NSA HIS A 410 UNP Q9WZF8 EXPRESSION TAG SEQADV 2NSA HIS A 411 UNP Q9WZF8 EXPRESSION TAG SEQADV 2NSA HIS A 412 UNP Q9WZF8 EXPRESSION TAG SEQRES 1 A 170 GLY GLU PHE GLU THR LEU GLU GLN LEU LYS GLU SER LEU SEQRES 2 A 170 LYS LYS GLU GLY LYS GLU ILE TYR ASP VAL GLU MSE LYS SEQRES 3 A 170 GLU SER MSE ARG GLU GLN LEU LEU GLU LYS LEU PRO GLU SEQRES 4 A 170 ILE VAL GLU ILE GLU ILE SER ASP ARG THR LEU GLU ILE SEQRES 5 A 170 LEU VAL ASN GLU ALA ILE ASN ARG LEU LYS ARG GLU GLY SEQRES 6 A 170 ARG TYR GLU GLN ILE VAL SER SER TYR GLU SER GLU GLU SEQRES 7 A 170 LYS PHE ARG GLU GLU LEU LYS GLU ARG ILE LEU ASP ASP SEQRES 8 A 170 ILE LYS ARG ASP ARG VAL ILE GLU VAL LEU ALA GLN GLU SEQRES 9 A 170 LYS GLY ILE SER VAL ASN ASP GLU GLU LEU GLU LYS GLU SEQRES 10 A 170 ALA GLU GLU LEU ALA PRO PHE TRP GLY ILE SER PRO ASP SEQRES 11 A 170 ARG ALA LYS SER LEU VAL LYS ALA ARG GLN ASP LEU ARG SEQRES 12 A 170 GLU GLU LEU ARG TRP ALA ILE LEU LYS ARG LYS VAL LEU SEQRES 13 A 170 ASP LEU LEU LEU GLN GLU VAL GLU HIS HIS HIS HIS HIS SEQRES 14 A 170 HIS MODRES 2NSA MSE A 267 MET SELENOMETHIONINE MODRES 2NSA MSE A 271 MET SELENOMETHIONINE HET MSE A 267 8 HET MSE A 271 8 HET SO4 A 413 5 HET SO4 A 414 5 HET SO4 A 415 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *208(H2 O) HELIX 1 1 THR A 247 LEU A 255 1 9 HELIX 2 2 GLU A 258 TYR A 263 5 6 HELIX 3 3 GLU A 266 LEU A 279 1 14 HELIX 4 4 PRO A 280 VAL A 283 5 4 HELIX 5 5 SER A 288 GLU A 306 1 19 HELIX 6 6 ARG A 308 SER A 315 1 8 HELIX 7 7 SER A 318 GLY A 348 1 31 HELIX 8 8 ASN A 352 GLY A 368 1 17 HELIX 9 9 SER A 370 ARG A 381 1 12 HELIX 10 10 ARG A 381 GLN A 403 1 23 LINK C GLU A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N LYS A 268 1555 1555 1.33 LINK C SER A 270 N MSE A 271 1555 1555 1.33 LINK C MSE A 271 N ARG A 272 1555 1555 1.33 SITE 1 AC1 8 LEU A 303 LYS A 304 GLY A 307 ARG A 308 SITE 2 AC1 8 TYR A 309 GLU A 310 HOH A 518 HOH A 522 SITE 1 AC2 5 ARG A 385 ARG A 389 HIS A 410 HOH A 464 SITE 2 AC2 5 HOH A 582 SITE 1 AC3 6 GLU A 359 ALA A 391 ILE A 392 ARG A 395 SITE 2 AC3 6 HOH A 510 HOH A 555 CRYST1 53.840 74.210 90.070 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011102 0.00000