HEADER STRUCTURAL GENOMICS/UNKNOWN FUNCTION 13-NOV-06 2NVN TITLE CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN TITLE 2 FUNCTION (YP_400729.1) FROM SYNECHOCOCCUS SP. PCC 7942 (ELONGATUS) AT TITLE 3 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 1140; SOURCE 4 STRAIN: PCC 7942; SOURCE 5 GENE: YP_400729.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS YP_400729.1, HYPOTHETICAL PROTEIN, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 JCSG, STRUCTURAL GENOMICS-UNKNOWN FUNCTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2NVN 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2NVN 1 REMARK REVDAT 3 13-JUL-11 2NVN 1 VERSN REVDAT 2 24-FEB-09 2NVN 1 VERSN REVDAT 1 12-DEC-06 2NVN 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (YP_400729.1) FROM JRNL TITL 2 SYNECHOCOCCUS SP. PCC 7942 (ELONGATUS) AT 2.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 709 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.4350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 71.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : -1.14000 REMARK 3 B33 (A**2) : 2.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.450 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 971 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 649 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1326 ; 1.823 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1568 ; 1.479 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 5.126 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;30.169 ;22.955 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 151 ;15.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.381 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 149 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1098 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 207 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 152 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 583 ; 0.146 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 427 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 532 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 28 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.098 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.081 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 703 ; 0.863 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 246 ; 0.136 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 964 ; 1.131 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 413 ; 1.748 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 360 ; 2.653 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6180 23.4880 29.8140 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.3513 REMARK 3 T33: 0.0305 T12: -0.0992 REMARK 3 T13: -0.0374 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.6133 L22: 5.6788 REMARK 3 L33: 5.5905 L12: -1.1120 REMARK 3 L13: 2.1403 L23: -3.1778 REMARK 3 S TENSOR REMARK 3 S11: 0.2312 S12: 0.1975 S13: -0.2486 REMARK 3 S21: -0.6194 S22: 0.1222 S23: 0.3860 REMARK 3 S31: 0.2356 S32: -0.3572 S33: -0.3534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2NVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9805 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : FIXED-HEIGHT EXIT BEAM, TOROIDAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10011 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.880 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M NACL, 0.1M IMIDAZOLE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.25000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.09000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.37500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.09000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.12500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.09000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.09000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.37500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.09000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.09000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.12500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC REMARK 300 ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). ASSIGNMENT REMARK 300 OF BIOMOLECULE AS A DIMER IS BASED UPON EBI/PISA ANALYSIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.50000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 20 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 119 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 86 94.68 -168.13 REMARK 500 ASP A 96 -131.69 49.08 REMARK 500 LEU A 118 75.22 -101.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 368396 RELATED DB: TARGETDB DBREF 2NVN A 1 121 UNP Q5MZF1 Q5MZF1_SYNP6 1 121 SEQADV 2NVN GLY A 0 UNP Q5MZF1 EXPRESSION TAG SEQADV 2NVN MSE A 1 UNP Q5MZF1 MET 1 MODIFIED RESIDUE SEQADV 2NVN MSE A 40 UNP Q5MZF1 MET 40 MODIFIED RESIDUE SEQADV 2NVN MSE A 62 UNP Q5MZF1 MET 62 MODIFIED RESIDUE SEQRES 1 A 122 GLY MSE GLY ARG ILE LEU ARG GLU GLY ALA GLY TRP ARG SEQRES 2 A 122 LEU GLY TRP ASP GLU THR ALA HIS ARG TYR PRO GLY LEU SEQRES 3 A 122 VAL GLY THR THR ASP TRP ALA VAL GLU LEU THR ALA ALA SEQRES 4 A 122 GLU MSE ALA ASP PHE CYS ARG LEU VAL GLN GLN LEU ALA SEQRES 5 A 122 GLU THR ILE ALA ALA ILE ALA PRO GLU LEU MSE PRO GLU SEQRES 6 A 122 GLU ARG LEU GLN ILE GLU ALA GLU SER ALA LEU LEU TRP SEQRES 7 A 122 LEU GLU ALA GLU GLY PHE ALA ASP ALA TYR GLU LEU ARG SEQRES 8 A 122 LEU ILE LEU ALA SER ASP ARG ARG VAL GLU ALA CYS TRP SEQRES 9 A 122 PRO ALA ALA ALA VAL PRO ALA LEU VAL ALA ALA THR HIS SEQRES 10 A 122 THR LEU LYS GLY PHE MODRES 2NVN MSE A 1 MET SELENOMETHIONINE MODRES 2NVN MSE A 40 MET SELENOMETHIONINE MODRES 2NVN MSE A 62 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 40 8 HET MSE A 62 8 HET GOL A 122 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *37(H2 O) HELIX 1 1 THR A 36 ALA A 56 1 21 HELIX 2 2 ALA A 107 HIS A 116 1 10 SHEET 1 A 4 ARG A 3 GLY A 8 0 SHEET 2 A 4 TRP A 11 ASP A 16 -1 O LEU A 13 N ARG A 6 SHEET 3 A 4 GLY A 24 GLY A 27 -1 O LEU A 25 N GLY A 14 SHEET 4 A 4 ALA A 32 LEU A 35 -1 O VAL A 33 N VAL A 26 SHEET 1 B 4 LEU A 67 GLU A 72 0 SHEET 2 B 4 LEU A 76 PHE A 83 -1 O GLY A 82 N LEU A 67 SHEET 3 B 4 ALA A 86 LEU A 93 -1 O GLU A 88 N GLU A 81 SHEET 4 B 4 GLU A 100 TRP A 103 -1 O TRP A 103 N LEU A 89 LINK C MSE A 1 N GLY A 2 1555 1555 1.34 LINK C GLU A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N ALA A 41 1555 1555 1.33 LINK C LEU A 61 N MSE A 62 1555 1555 1.34 LINK C MSE A 62 N PRO A 63 1555 1555 1.33 SITE 1 AC1 2 ASP A 30 GLU A 88 CRYST1 82.180 82.180 80.500 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012420 0.00000 HETATM 1 N MSE A 1 13.563 8.730 15.592 1.00 49.84 N HETATM 2 CA MSE A 1 14.669 9.295 16.473 1.00 51.12 C HETATM 3 C MSE A 1 15.066 8.396 17.644 1.00 48.92 C HETATM 4 O MSE A 1 14.326 8.282 18.620 1.00 48.94 O HETATM 5 CB MSE A 1 14.366 10.711 16.991 1.00 50.74 C HETATM 6 CG MSE A 1 13.034 10.952 17.744 1.00 52.42 C HETATM 7 SE MSE A 1 12.900 12.845 18.406 0.75 56.96 SE HETATM 8 CE MSE A 1 13.635 13.662 16.688 1.00 55.29 C