data_2NWV # _entry.id 2NWV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2NWV pdb_00002nwv 10.2210/pdb2nwv/pdb RCSB RCSB040401 ? ? WWPDB D_1000040401 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 367681 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2NWV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-11-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Site-specific recombination of nitrogen-fixation genes in cyanobacteria by XisF-XisH-XisI complex: Structures and models.' _citation.journal_abbrev Proteins _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 1097-0134 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25179344 _citation.pdbx_database_id_DOI 10.1002/prot.24679 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hwang, W.C.' 1 ? primary 'Golden, J.W.' 2 ? primary 'Pascual, J.' 3 ? primary 'Xu, D.' 4 ? primary 'Cheltsov, A.' 5 ? primary 'Godzik, A.' 6 ? # _cell.entry_id 2NWV _cell.length_a 62.522 _cell.length_b 62.522 _cell.length_c 137.558 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2NWV _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'XisI protein-like' 13592.875 1 ? ? ? ? 2 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)DNVAEYRKLIKQVLTEYDNLSRQSPETNYETCLVFDENHDNYLWLAVDWQGSKRIKYTYVHIRIKNEKIYIEED YTEEGIATEL(MSE)RLGVTNNDIVLAFHPPDVRKFTDFATA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDNVAEYRKLIKQVLTEYDNLSRQSPETNYETCLVFDENHDNYLWLAVDWQGSKRIKYTYVHIRIKNEKIYIEEDYTEE GIATELMRLGVTNNDIVLAFHPPDVRKFTDFATA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 367681 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASP n 1 4 ASN n 1 5 VAL n 1 6 ALA n 1 7 GLU n 1 8 TYR n 1 9 ARG n 1 10 LYS n 1 11 LEU n 1 12 ILE n 1 13 LYS n 1 14 GLN n 1 15 VAL n 1 16 LEU n 1 17 THR n 1 18 GLU n 1 19 TYR n 1 20 ASP n 1 21 ASN n 1 22 LEU n 1 23 SER n 1 24 ARG n 1 25 GLN n 1 26 SER n 1 27 PRO n 1 28 GLU n 1 29 THR n 1 30 ASN n 1 31 TYR n 1 32 GLU n 1 33 THR n 1 34 CYS n 1 35 LEU n 1 36 VAL n 1 37 PHE n 1 38 ASP n 1 39 GLU n 1 40 ASN n 1 41 HIS n 1 42 ASP n 1 43 ASN n 1 44 TYR n 1 45 LEU n 1 46 TRP n 1 47 LEU n 1 48 ALA n 1 49 VAL n 1 50 ASP n 1 51 TRP n 1 52 GLN n 1 53 GLY n 1 54 SER n 1 55 LYS n 1 56 ARG n 1 57 ILE n 1 58 LYS n 1 59 TYR n 1 60 THR n 1 61 TYR n 1 62 VAL n 1 63 HIS n 1 64 ILE n 1 65 ARG n 1 66 ILE n 1 67 LYS n 1 68 ASN n 1 69 GLU n 1 70 LYS n 1 71 ILE n 1 72 TYR n 1 73 ILE n 1 74 GLU n 1 75 GLU n 1 76 ASP n 1 77 TYR n 1 78 THR n 1 79 GLU n 1 80 GLU n 1 81 GLY n 1 82 ILE n 1 83 ALA n 1 84 THR n 1 85 GLU n 1 86 LEU n 1 87 MSE n 1 88 ARG n 1 89 LEU n 1 90 GLY n 1 91 VAL n 1 92 THR n 1 93 ASN n 1 94 ASN n 1 95 ASP n 1 96 ILE n 1 97 VAL n 1 98 LEU n 1 99 ALA n 1 100 PHE n 1 101 HIS n 1 102 PRO n 1 103 PRO n 1 104 ASP n 1 105 VAL n 1 106 ARG n 1 107 LYS n 1 108 PHE n 1 109 THR n 1 110 ASP n 1 111 PHE n 1 112 ALA n 1 113 THR n 1 114 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Anabaena _entity_src_gen.pdbx_gene_src_gene YP_323822.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Anabaena variabilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1172 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q3M7V9_ANAVT _struct_ref.pdbx_db_accession Q3M7V9 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NWV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q3M7V9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 113 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 113 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2NWV _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q3M7V9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2NWV # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP, NANODROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2M NaCl, 30.0% PEG-3000, 0.1M TRIS, pH 7.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2006-09-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9792 1.0 2 0.9795 1.0 3 1.0000 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength_list '0.9792, 0.9795, 1.0000' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 2NWV _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 29.025 _reflns.number_obs 14324 _reflns.pdbx_Rmerge_I_obs 0.129 _reflns.pdbx_netI_over_sigmaI 5.300 _reflns.pdbx_Rsym_value 0.129 _reflns.pdbx_redundancy 8.400 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.85 1.90 ? 8996 ? 0.016 0.5 0.01628 ? 8.80 ? 1026 99.80 1 1 1.90 1.95 ? 8720 ? 0.016 0.6 0.01231 ? 8.70 ? 1001 99.90 2 1 1.95 2.01 ? 8398 ? 0.016 0.9 0.876 ? 8.70 ? 965 99.90 3 1 2.01 2.07 ? 8307 ? 0.016 1.1 0.672 ? 8.70 ? 954 99.90 4 1 2.07 2.14 ? 7902 ? 0.016 1.5 0.517 ? 8.70 ? 913 100.00 5 1 2.14 2.21 ? 7757 ? 0.016 2.0 0.386 ? 8.70 ? 895 100.00 6 1 2.21 2.29 ? 7463 ? 0.016 2.4 0.318 ? 8.60 ? 866 100.00 7 1 2.29 2.39 ? 7086 ? 0.016 2.7 0.286 ? 8.60 ? 828 100.00 8 1 2.39 2.49 ? 6902 ? 0.016 3.1 0.244 ? 8.60 ? 807 100.00 9 1 2.49 2.62 ? 6598 ? 0.016 3.6 0.211 ? 8.40 ? 783 100.00 10 1 2.62 2.76 ? 6164 ? 0.016 4.9 0.155 ? 8.40 ? 731 100.00 11 1 2.76 2.93 ? 5847 ? 0.016 6.2 0.121 ? 8.40 ? 698 100.00 12 1 2.93 3.13 ? 5574 ? 0.016 7.6 0.098 ? 8.30 ? 673 100.00 13 1 3.13 3.38 ? 5023 ? 0.016 10.5 0.069 ? 8.20 ? 615 100.00 14 1 3.38 3.70 ? 4754 ? 0.016 11.3 0.061 ? 8.10 ? 587 100.00 15 1 3.70 4.14 ? 4152 ? 0.016 12.9 0.05 ? 7.80 ? 533 100.00 16 1 4.14 4.78 ? 3467 ? 0.016 13.8 0.044 ? 7.30 ? 478 100.00 17 1 4.78 5.85 ? 3117 ? 0.016 14.2 0.044 ? 7.50 ? 413 100.00 18 1 5.85 8.27 ? 2580 ? 0.016 14.7 0.044 ? 7.50 ? 343 100.00 19 1 8.27 29.03 ? 1368 ? 0.016 13.2 0.039 ? 6.40 ? 215 98.00 20 1 # _refine.entry_id 2NWV _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 29.025 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.880 _refine.ls_number_reflns_obs 14279 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;(1) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2) A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL SE-MET INCORPORATION. (3) ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.192 _refine.ls_R_factor_R_free 0.225 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 718 _refine.B_iso_mean 20.411 _refine.aniso_B[1][1] 0.780 _refine.aniso_B[2][2] 0.780 _refine.aniso_B[3][3] -1.170 _refine.aniso_B[1][2] 0.390 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.pdbx_overall_ESU_R 0.119 _refine.pdbx_overall_ESU_R_Free 0.116 _refine.overall_SU_ML 0.086 _refine.overall_SU_B 5.788 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.193 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 922 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 998 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 29.025 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 971 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 643 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1325 1.555 1.937 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1562 1.001 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 117 8.051 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 50 39.037 23.800 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 164 15.245 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 19.939 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 147 0.103 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1095 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 210 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 168 0.208 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 688 0.197 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 464 0.183 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 523 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 59 0.161 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 11 0.119 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 24 0.286 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 11 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 635 2.546 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 229 0.599 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 945 3.582 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 440 5.931 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 380 7.958 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.710 _refine_ls_shell.number_reflns_R_work 973 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.287 _refine_ls_shell.R_factor_R_free 0.396 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1023 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2NWV _struct.title 'Crystal structure of XisI protein-like (YP_323822.1) from Anabaena Variabilis ATCC 29413 at 1.85 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_323822.1, XisI protein-like, Structural Genomics, PSI-2, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, Structural Genomics-Unknown Function COMPLEX ; _struct_keywords.pdbx_keywords 'Structural Genomics/Unknown Function' _struct_keywords.entry_id 2NWV # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 4 ? ARG A 24 ? ASN A 3 ARG A 23 1 ? 21 HELX_P HELX_P2 2 GLY A 81 ? LEU A 89 ? GLY A 80 LEU A 88 1 ? 9 HELX_P HELX_P3 3 THR A 92 ? ASN A 94 ? THR A 91 ASN A 93 5 ? 3 HELX_P HELX_P4 4 PRO A 102 ? THR A 109 ? PRO A 101 THR A 108 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 86 C ? ? ? 1_555 A MSE 87 N ? ? A LEU 85 A MSE 86 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale2 covale both ? A MSE 87 C ? ? ? 1_555 A ARG 88 N B ? A MSE 86 A ARG 87 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A MSE 87 C ? ? ? 1_555 A ARG 88 N A ? A MSE 86 A ARG 87 1_555 ? ? ? ? ? ? ? 1.326 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 33 ? ASP A 38 ? THR A 32 ASP A 37 A 2 ASN A 43 ? GLN A 52 ? ASN A 42 GLN A 51 A 3 LYS A 55 ? LYS A 67 ? LYS A 54 LYS A 66 A 4 LYS A 70 ? ASP A 76 ? LYS A 69 ASP A 75 A 5 ILE A 96 ? LEU A 98 ? ILE A 95 LEU A 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 38 ? N ASP A 37 O ASN A 43 ? O ASN A 42 A 2 3 N TYR A 44 ? N TYR A 43 O ILE A 64 ? O ILE A 63 A 3 4 N ARG A 65 ? N ARG A 64 O TYR A 72 ? O TYR A 71 A 4 5 N ILE A 71 ? N ILE A 70 O VAL A 97 ? O VAL A 96 # _atom_sites.entry_id 2NWV _atom_sites.fract_transf_matrix[1][1] 0.01599 _atom_sites.fract_transf_matrix[1][2] 0.00923 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01847 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00727 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 ASN 4 3 3 ASN ASN A . n A 1 5 VAL 5 4 4 VAL VAL A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 TYR 8 7 7 TYR TYR A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 GLN 14 13 13 GLN GLN A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 THR 17 16 16 THR THR A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 TYR 19 18 18 TYR TYR A . n A 1 20 ASP 20 19 19 ASP ASP A . n A 1 21 ASN 21 20 20 ASN ASN A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 GLN 25 24 24 GLN GLN A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 PRO 27 26 26 PRO PRO A . n A 1 28 GLU 28 27 27 GLU GLU A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 ASN 30 29 29 ASN ASN A . n A 1 31 TYR 31 30 30 TYR TYR A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 CYS 34 33 33 CYS CYS A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 ASN 40 39 39 ASN ASN A . n A 1 41 HIS 41 40 40 HIS HIS A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 ASN 43 42 42 ASN ASN A . n A 1 44 TYR 44 43 43 TYR TYR A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 TRP 46 45 45 TRP TRP A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 VAL 49 48 48 VAL VAL A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 TRP 51 50 50 TRP TRP A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 LYS 58 57 57 LYS LYS A . n A 1 59 TYR 59 58 58 TYR TYR A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 TYR 61 60 60 TYR TYR A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 HIS 63 62 62 HIS HIS A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 ILE 66 65 65 ILE ILE A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 LYS 70 69 69 LYS LYS A . n A 1 71 ILE 71 70 70 ILE ILE A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 TYR 77 76 76 TYR TYR A . n A 1 78 THR 78 77 77 THR THR A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 ILE 82 81 81 ILE ILE A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 THR 84 83 83 THR THR A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 MSE 87 86 86 MSE MSE A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 VAL 91 90 90 VAL VAL A . n A 1 92 THR 92 91 91 THR THR A . n A 1 93 ASN 93 92 92 ASN ASN A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 VAL 97 96 96 VAL VAL A . n A 1 98 LEU 98 97 97 LEU LEU A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 PHE 100 99 99 PHE PHE A . n A 1 101 HIS 101 100 100 HIS HIS A . n A 1 102 PRO 102 101 101 PRO PRO A . n A 1 103 PRO 103 102 102 PRO PRO A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 ARG 106 105 105 ARG ARG A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 PHE 108 107 107 PHE PHE A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 PHE 111 110 110 PHE PHE A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 THR 113 112 112 THR THR A . n A 1 114 ALA 114 113 113 ALA ALA A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 114 1 HOH HOH A . B 2 HOH 2 115 2 HOH HOH A . B 2 HOH 3 116 3 HOH HOH A . B 2 HOH 4 117 4 HOH HOH A . B 2 HOH 5 118 5 HOH HOH A . B 2 HOH 6 119 6 HOH HOH A . B 2 HOH 7 120 7 HOH HOH A . B 2 HOH 8 121 8 HOH HOH A . B 2 HOH 9 122 9 HOH HOH A . B 2 HOH 10 123 10 HOH HOH A . B 2 HOH 11 124 11 HOH HOH A . B 2 HOH 12 125 12 HOH HOH A . B 2 HOH 13 126 13 HOH HOH A . B 2 HOH 14 127 14 HOH HOH A . B 2 HOH 15 128 15 HOH HOH A . B 2 HOH 16 129 16 HOH HOH A . B 2 HOH 17 130 17 HOH HOH A . B 2 HOH 18 131 18 HOH HOH A . B 2 HOH 19 132 19 HOH HOH A . B 2 HOH 20 133 20 HOH HOH A . B 2 HOH 21 134 21 HOH HOH A . B 2 HOH 22 135 22 HOH HOH A . B 2 HOH 23 136 23 HOH HOH A . B 2 HOH 24 137 24 HOH HOH A . B 2 HOH 25 138 25 HOH HOH A . B 2 HOH 26 139 26 HOH HOH A . B 2 HOH 27 140 27 HOH HOH A . B 2 HOH 28 141 28 HOH HOH A . B 2 HOH 29 142 29 HOH HOH A . B 2 HOH 30 143 30 HOH HOH A . B 2 HOH 31 144 31 HOH HOH A . B 2 HOH 32 145 32 HOH HOH A . B 2 HOH 33 146 33 HOH HOH A . B 2 HOH 34 147 34 HOH HOH A . B 2 HOH 35 148 35 HOH HOH A . B 2 HOH 36 149 36 HOH HOH A . B 2 HOH 37 150 37 HOH HOH A . B 2 HOH 38 151 38 HOH HOH A . B 2 HOH 39 152 39 HOH HOH A . B 2 HOH 40 153 40 HOH HOH A . B 2 HOH 41 154 41 HOH HOH A . B 2 HOH 42 155 42 HOH HOH A . B 2 HOH 43 156 43 HOH HOH A . B 2 HOH 44 157 44 HOH HOH A . B 2 HOH 45 158 45 HOH HOH A . B 2 HOH 46 159 46 HOH HOH A . B 2 HOH 47 160 47 HOH HOH A . B 2 HOH 48 161 48 HOH HOH A . B 2 HOH 49 162 49 HOH HOH A . B 2 HOH 50 163 50 HOH HOH A . B 2 HOH 51 164 51 HOH HOH A . B 2 HOH 52 165 52 HOH HOH A . B 2 HOH 53 166 53 HOH HOH A . B 2 HOH 54 167 54 HOH HOH A . B 2 HOH 55 168 55 HOH HOH A . B 2 HOH 56 169 56 HOH HOH A . B 2 HOH 57 170 57 HOH HOH A . B 2 HOH 58 171 58 HOH HOH A . B 2 HOH 59 172 59 HOH HOH A . B 2 HOH 60 173 60 HOH HOH A . B 2 HOH 61 174 61 HOH HOH A . B 2 HOH 62 175 62 HOH HOH A . B 2 HOH 63 176 63 HOH HOH A . B 2 HOH 64 177 64 HOH HOH A . B 2 HOH 65 178 65 HOH HOH A . B 2 HOH 66 179 66 HOH HOH A . B 2 HOH 67 180 67 HOH HOH A . B 2 HOH 68 181 68 HOH HOH A . B 2 HOH 69 182 69 HOH HOH A . B 2 HOH 70 183 70 HOH HOH A . B 2 HOH 71 184 71 HOH HOH A . B 2 HOH 72 185 72 HOH HOH A . B 2 HOH 73 186 73 HOH HOH A . B 2 HOH 74 187 74 HOH HOH A . B 2 HOH 75 188 75 HOH HOH A . B 2 HOH 76 189 76 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 87 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 86 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -22.9263333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-28 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-09-10 5 'Structure model' 1 4 2014-09-24 6 'Structure model' 1 5 2017-10-18 7 'Structure model' 1 6 2017-10-25 8 'Structure model' 1 7 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Refinement description' 7 7 'Structure model' 'Author supporting evidence' 8 8 'Structure model' 'Database references' 9 8 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' software 2 7 'Structure model' pdbx_struct_assembly_auth_evidence 3 8 'Structure model' database_2 4 8 'Structure model' struct_conn 5 8 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_software.classification' 2 6 'Structure model' '_software.name' 3 8 'Structure model' '_database_2.pdbx_DOI' 4 8 'Structure model' '_database_2.pdbx_database_accession' 5 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 8 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 14.4618 _pdbx_refine_tls.origin_y 17.0405 _pdbx_refine_tls.origin_z -4.1336 _pdbx_refine_tls.T[1][1] -0.0277 _pdbx_refine_tls.T[2][2] -0.0391 _pdbx_refine_tls.T[3][3] -0.0307 _pdbx_refine_tls.T[1][2] 0.0148 _pdbx_refine_tls.T[1][3] 0.0015 _pdbx_refine_tls.T[2][3] -0.0151 _pdbx_refine_tls.L[1][1] 0.7855 _pdbx_refine_tls.L[2][2] 0.7617 _pdbx_refine_tls.L[3][3] 2.1897 _pdbx_refine_tls.L[1][2] 0.1159 _pdbx_refine_tls.L[1][3] 0.3207 _pdbx_refine_tls.L[2][3] -0.3568 _pdbx_refine_tls.S[1][1] -0.0282 _pdbx_refine_tls.S[2][2] -0.0344 _pdbx_refine_tls.S[3][3] 0.0625 _pdbx_refine_tls.S[1][2] -0.0518 _pdbx_refine_tls.S[1][3] 0.0687 _pdbx_refine_tls.S[2][3] -0.0192 _pdbx_refine_tls.S[2][1] 0.1022 _pdbx_refine_tls.S[3][1] -0.1819 _pdbx_refine_tls.S[3][2] -0.2340 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 3 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 114 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 2 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 113 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 SOLVE . ? ? ? ? phasing ? ? ? 9 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASP _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 2 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 3 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -61.66 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 2 ? CG ? A ASP 3 CG 2 1 Y 1 A ASP 2 ? OD1 ? A ASP 3 OD1 3 1 Y 1 A ASP 2 ? OD2 ? A ASP 3 OD2 4 1 Y 1 A LYS 9 ? CE ? A LYS 10 CE 5 1 Y 1 A LYS 9 ? NZ ? A LYS 10 NZ 6 1 Y 1 A GLU 27 ? CG ? A GLU 28 CG 7 1 Y 1 A GLU 27 ? CD ? A GLU 28 CD 8 1 Y 1 A GLU 27 ? OE1 ? A GLU 28 OE1 9 1 Y 1 A GLU 27 ? OE2 ? A GLU 28 OE2 10 1 Y 1 A GLU 68 ? OE1 ? A GLU 69 OE1 11 1 Y 1 A GLU 68 ? OE2 ? A GLU 69 OE2 12 1 Y 1 A GLU 78 ? CD ? A GLU 79 CD 13 1 Y 1 A GLU 78 ? OE1 ? A GLU 79 OE1 14 1 Y 1 A GLU 78 ? OE2 ? A GLU 79 OE2 15 1 Y 1 A GLU 79 ? CG ? A GLU 80 CG 16 1 Y 1 A GLU 79 ? CD ? A GLU 80 CD 17 1 Y 1 A GLU 79 ? OE1 ? A GLU 80 OE1 18 1 Y 1 A GLU 79 ? OE2 ? A GLU 80 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #