HEADER METAL BINDING PROTEIN 28-NOV-06 2O13 TITLE SOLUTION STRUCTURE OF THE C-TERMINAL LIM DOMAIN OF MLP/CRP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUSCLE LIM PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM ZINC-BINDING DOMAIN 2, RESIDUES 119-176; COMPND 5 SYNONYM: CYSTEINE AND GLYCINE-RICH PROTEIN 3, CYSTEINE-RICH PROTEIN COMPND 6 3, CRP3, LIM DOMAIN PROTEIN, CARDIAC; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSRP3, CLP, MLP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS LIM DOMAIN, ZINC BINDING, CRP, MLP, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SCHALLUS,C.MUHLE-GOLL,C.EDLICH REVDAT 4 27-DEC-23 2O13 1 REMARK REVDAT 3 16-MAR-22 2O13 1 REMARK REVDAT 2 24-FEB-09 2O13 1 VERSN REVDAT 1 11-DEC-07 2O13 0 JRNL AUTH T.SCHALLUS,G.STIER,K.FEHER,C.MUHLE-GOLL JRNL TITL STRUCTURE OF THE MUSCULAR LIM PROTEIN MLP AND ITS JRNL TITL 2 INTERACTION WITH ACTININ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ZINC COORDINATION FIXED BY EXPLICIT REMARK 3 BONDS AND ANGLES REMARK 4 REMARK 4 2O13 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040553. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM C-TERMINAL LIM DOMAIN, REMARK 210 20MM PHOSPHATE BUFFER K, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 132 90.75 -67.92 REMARK 500 1 SER A 156 -50.13 72.00 REMARK 500 1 THR A 157 -149.27 -112.01 REMARK 500 2 PHE A 145 70.62 -69.69 REMARK 500 2 GLU A 155 -77.14 -137.37 REMARK 500 2 ASN A 158 27.20 -144.21 REMARK 500 3 GLU A 155 -84.38 -141.37 REMARK 500 3 SER A 156 -81.17 -110.30 REMARK 500 4 LYS A 132 93.45 -60.90 REMARK 500 4 PHE A 145 75.71 -69.45 REMARK 500 4 GLU A 155 -77.46 -103.25 REMARK 500 4 SER A 156 -54.54 -147.16 REMARK 500 5 LYS A 132 91.37 -64.11 REMARK 500 6 LYS A 132 90.35 -68.70 REMARK 500 6 SER A 156 -89.63 -154.24 REMARK 500 6 ASN A 158 34.01 -176.20 REMARK 500 6 ASP A 163 -29.94 73.02 REMARK 500 7 LYS A 132 94.26 -68.49 REMARK 500 7 MET A 134 89.83 -69.38 REMARK 500 7 SER A 156 93.79 -63.17 REMARK 500 7 THR A 157 -33.70 -171.80 REMARK 500 8 PHE A 145 81.46 -59.20 REMARK 500 8 GLU A 155 48.10 -79.14 REMARK 500 8 SER A 156 -30.22 71.31 REMARK 500 9 TYR A 128 -168.25 -125.68 REMARK 500 9 LYS A 132 90.47 -63.80 REMARK 500 9 PHE A 145 75.86 -68.41 REMARK 500 10 THR A 157 48.58 -77.62 REMARK 500 10 LYS A 162 108.04 -160.66 REMARK 500 11 SER A 156 -33.04 167.51 REMARK 500 12 SER A 156 -55.95 172.91 REMARK 500 12 ASP A 163 -75.64 69.91 REMARK 500 13 GLU A 155 -164.55 -110.24 REMARK 500 14 LYS A 132 91.41 -61.77 REMARK 500 14 PHE A 145 77.33 -65.73 REMARK 500 14 ASP A 163 -81.18 71.20 REMARK 500 15 LYS A 132 96.77 -65.67 REMARK 500 15 PHE A 145 80.02 -66.74 REMARK 500 15 GLU A 155 -157.62 -142.78 REMARK 500 16 LYS A 132 90.86 -66.79 REMARK 500 16 PHE A 145 84.08 -65.20 REMARK 500 16 GLU A 155 -70.52 -75.48 REMARK 500 16 SER A 156 -47.29 -169.65 REMARK 500 17 GLU A 155 -91.57 -101.84 REMARK 500 17 SER A 156 -42.62 -149.55 REMARK 500 18 PRO A 139 103.58 -56.80 REMARK 500 18 SER A 156 -159.96 51.06 REMARK 500 18 THR A 157 -71.66 74.04 REMARK 500 18 ASN A 158 65.69 -100.32 REMARK 500 18 ASP A 163 -84.32 58.95 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 10 TYR A 167 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 191 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 120 SG REMARK 620 2 CYS A 123 SG 108.4 REMARK 620 3 HIS A 141 ND1 110.9 110.8 REMARK 620 4 CYS A 144 SG 108.5 107.0 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 190 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 147 SG REMARK 620 2 CYS A 150 SG 109.3 REMARK 620 3 CYS A 168 SG 108.4 109.7 REMARK 620 4 CYS A 171 SG 110.0 109.5 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 191 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O10 RELATED DB: PDB REMARK 900 RELATED ID: 15059 RELATED DB: BMRB DBREF 2O13 A 119 176 UNP P50461 CSRP3_HUMAN 119 176 SEQRES 1 A 58 LYS CYS PRO ARG CYS GLY LYS SER VAL TYR ALA ALA GLU SEQRES 2 A 58 LYS VAL MET GLY GLY GLY LYS PRO TRP HIS LYS THR CYS SEQRES 3 A 58 PHE ARG CYS ALA ILE CYS GLY LYS SER LEU GLU SER THR SEQRES 4 A 58 ASN VAL THR ASP LYS ASP GLY GLU LEU TYR CYS LYS VAL SEQRES 5 A 58 CYS TYR ALA LYS ASN PHE HET ZN A 190 1 HET ZN A 191 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 LYS A 169 PHE A 176 1 8 SHEET 1 A 2 VAL A 133 GLY A 135 0 SHEET 2 A 2 LYS A 138 TRP A 140 -1 O TRP A 140 N VAL A 133 SHEET 1 B 2 ARG A 146 CYS A 147 0 SHEET 2 B 2 LYS A 152 SER A 153 -1 O LYS A 152 N CYS A 147 SHEET 1 C 2 VAL A 159 LYS A 162 0 SHEET 2 C 2 GLU A 165 CYS A 168 -1 O GLU A 165 N LYS A 162 LINK SG CYS A 120 ZN ZN A 191 1555 1555 2.34 LINK SG CYS A 123 ZN ZN A 191 1555 1555 2.33 LINK ND1 HIS A 141 ZN ZN A 191 1555 1555 2.05 LINK SG CYS A 144 ZN ZN A 191 1555 1555 2.31 LINK SG CYS A 147 ZN ZN A 190 1555 1555 2.27 LINK SG CYS A 150 ZN ZN A 190 1555 1555 2.29 LINK SG CYS A 168 ZN ZN A 190 1555 1555 2.31 LINK SG CYS A 171 ZN ZN A 190 1555 1555 2.29 SITE 1 AC1 4 CYS A 147 CYS A 150 CYS A 168 CYS A 171 SITE 1 AC2 4 CYS A 120 CYS A 123 HIS A 141 CYS A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1