HEADER PROTEIN BINDING 30-NOV-06 2O2O TITLE SOLUTION STRUCTURE OF DOMAIN B FROM HUMAN CIN85 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3-DOMAIN KINASE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CIN85_B; COMPND 5 SYNONYM: SH3-DOMAIN B, CBL-INTERACTING PROTEIN OF 85 KDA, HUMAN SRC- COMPND 6 FAMILY KINASE-BINDING PROTEIN 1, HSB-1, CD2-BINDING PROTEIN 3, COMPND 7 CD2BP3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SH3KBP1, CIN85; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21*; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS SH3, CIN85, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 27 AUTHOR A.ABABOU,M.PFUHL,I.DIKIC,J.E.LADBURY REVDAT 4 27-DEC-23 2O2O 1 REMARK REVDAT 3 16-MAR-22 2O2O 1 REMARK SEQADV REVDAT 2 24-FEB-09 2O2O 1 VERSN REVDAT 1 13-NOV-07 2O2O 0 JRNL AUTH A.ABABOU,M.PFUHL,I.DIKIC,J.E.LADBURY JRNL TITL INVESTIGATION OF DOMAIN B FROM HUMAN CIN85 PROTEIN: JRNL TITL 2 STRUCTURE, DYNAMICS AND PROLINE-RICH MOTIF BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2O2O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040610. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 20MM PO4, 100MM NACL, 1MM EDTA, REMARK 210 2MM DTT, 0.01% NAN3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM CIN85_B U-15N PHOSPHATE REMARK 210 BUFFER; 1MM CIN85_B U-15N,13C; REMARK 210 20MM PHOSPHATE BUFFER; 1MM CIN85_ REMARK 210 B U-15N,13C; 20MM PHOSPHATE REMARK 210 BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 290302, ANSIG 3.3, AZARA REMARK 210 2.6, ARIA 1.2 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 27 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-27 REMARK 465 RES C SSSEQI REMARK 465 SER A 83 REMARK 465 MET A 84 REMARK 465 THR A 85 REMARK 465 GLY A 86 REMARK 465 GLY A 87 REMARK 465 GLN A 88 REMARK 465 GLN A 89 REMARK 465 MET A 90 REMARK 465 GLY A 91 REMARK 465 ASP A 167 REMARK 465 GLU A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG23 VAL A 127 H GLY A 129 1.21 REMARK 500 HB3 CYS A 103 HD12 LEU A 155 1.25 REMARK 500 HG11 VAL A 127 HA3 GLY A 138 1.29 REMARK 500 HB3 TYR A 109 HG LEU A 119 1.30 REMARK 500 HD12 LEU A 117 HE2 PHE A 147 1.31 REMARK 500 HB2 GLU A 97 HG2 ARG A 101 1.32 REMARK 500 OE1 GLU A 97 HE ARG A 101 1.57 REMARK 500 H VAL A 105 O ASP A 123 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 PHE A 107 CE1 PHE A 107 CZ 0.137 REMARK 500 3 PHE A 107 CE1 PHE A 107 CZ 0.129 REMARK 500 4 PHE A 107 CE1 PHE A 107 CZ 0.125 REMARK 500 9 PHE A 107 CE1 PHE A 107 CZ 0.122 REMARK 500 10 PHE A 107 CE1 PHE A 107 CZ 0.126 REMARK 500 11 PHE A 107 CE1 PHE A 107 CZ 0.133 REMARK 500 12 PHE A 107 CE1 PHE A 107 CZ 0.122 REMARK 500 15 PHE A 107 CE1 PHE A 107 CZ 0.116 REMARK 500 16 PHE A 107 CE1 PHE A 107 CZ 0.129 REMARK 500 18 PHE A 107 CE1 PHE A 107 CZ 0.128 REMARK 500 22 PHE A 107 CE1 PHE A 107 CZ 0.121 REMARK 500 27 PHE A 107 CE1 PHE A 107 CZ 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 98 164.70 67.68 REMARK 500 1 ARG A 99 -92.05 34.02 REMARK 500 1 ASP A 115 66.06 167.15 REMARK 500 1 VAL A 127 -98.74 -100.16 REMARK 500 1 GLU A 130 4.13 -59.28 REMARK 500 1 GLU A 133 98.15 3.14 REMARK 500 1 PRO A 148 36.17 -83.50 REMARK 500 1 GLU A 154 -87.68 -179.56 REMARK 500 1 SER A 156 72.82 148.96 REMARK 500 1 GLU A 158 -155.30 -90.57 REMARK 500 1 SER A 159 50.02 72.09 REMARK 500 1 LEU A 162 40.23 -70.99 REMARK 500 1 ILE A 164 -73.70 -66.79 REMARK 500 2 ARG A 95 -3.15 -59.30 REMARK 500 2 ARG A 98 -83.35 68.50 REMARK 500 2 ARG A 99 -87.19 -106.25 REMARK 500 2 ASP A 115 68.56 161.53 REMARK 500 2 VAL A 127 -100.25 -100.02 REMARK 500 2 GLU A 130 4.30 -59.98 REMARK 500 2 GLU A 132 36.67 -96.58 REMARK 500 2 GLU A 133 72.00 18.28 REMARK 500 2 PRO A 148 35.54 -83.97 REMARK 500 2 GLU A 154 -84.88 179.19 REMARK 500 2 SER A 156 155.73 152.80 REMARK 500 2 GLU A 158 -161.81 -60.94 REMARK 500 2 SER A 159 62.39 -156.16 REMARK 500 2 LEU A 162 40.31 -74.68 REMARK 500 3 ASN A 93 -154.96 -154.05 REMARK 500 3 ARG A 95 46.44 -95.02 REMARK 500 3 ARG A 98 -165.15 59.81 REMARK 500 3 ARG A 99 -95.28 25.02 REMARK 500 3 ASP A 115 69.95 156.69 REMARK 500 3 VAL A 127 -97.44 -100.76 REMARK 500 3 GLU A 130 3.48 -61.14 REMARK 500 3 GLU A 132 35.58 -94.47 REMARK 500 3 GLU A 133 84.45 12.90 REMARK 500 3 PRO A 148 42.69 -84.80 REMARK 500 3 GLU A 154 -85.25 178.78 REMARK 500 3 SER A 156 88.32 -171.43 REMARK 500 3 GLU A 158 -168.52 -78.85 REMARK 500 3 SER A 159 47.95 -170.62 REMARK 500 4 ASN A 93 79.71 -100.77 REMARK 500 4 ARG A 98 -142.25 63.26 REMARK 500 4 ARG A 99 -74.33 -20.48 REMARK 500 4 PRO A 111 22.01 -79.65 REMARK 500 4 ASP A 115 77.85 151.90 REMARK 500 4 VAL A 127 -99.22 -100.73 REMARK 500 4 GLU A 130 2.00 -59.73 REMARK 500 4 GLU A 132 34.95 -99.70 REMARK 500 4 GLU A 133 93.66 4.59 REMARK 500 REMARK 500 THIS ENTRY HAS 390 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 106 PHE A 107 1 -129.89 REMARK 500 LEU A 110 PRO A 111 1 -143.08 REMARK 500 ALA A 106 PHE A 107 2 -129.47 REMARK 500 LEU A 110 PRO A 111 2 -144.83 REMARK 500 ALA A 106 PHE A 107 3 -129.83 REMARK 500 LEU A 110 PRO A 111 3 -143.29 REMARK 500 ALA A 106 PHE A 107 4 -129.49 REMARK 500 LEU A 110 PRO A 111 4 -145.58 REMARK 500 ALA A 106 PHE A 107 5 -130.90 REMARK 500 LEU A 110 PRO A 111 5 -142.43 REMARK 500 LYS A 153 GLU A 154 5 146.96 REMARK 500 ALA A 106 PHE A 107 6 -129.16 REMARK 500 LEU A 110 PRO A 111 6 -142.80 REMARK 500 LYS A 153 GLU A 154 6 146.45 REMARK 500 ALA A 106 PHE A 107 7 -134.77 REMARK 500 LEU A 110 PRO A 111 7 -141.40 REMARK 500 LYS A 153 GLU A 154 7 147.19 REMARK 500 ALA A 106 PHE A 107 8 -130.10 REMARK 500 LEU A 110 PRO A 111 8 -145.67 REMARK 500 ALA A 106 PHE A 107 9 -129.21 REMARK 500 LEU A 110 PRO A 111 9 -143.58 REMARK 500 ALA A 106 PHE A 107 10 -129.85 REMARK 500 LEU A 110 PRO A 111 10 -142.61 REMARK 500 ALA A 106 PHE A 107 11 -128.70 REMARK 500 LEU A 110 PRO A 111 11 -146.54 REMARK 500 ALA A 106 PHE A 107 12 -134.80 REMARK 500 LEU A 110 PRO A 111 12 -144.76 REMARK 500 ALA A 106 PHE A 107 13 -131.70 REMARK 500 LEU A 110 PRO A 111 13 -142.93 REMARK 500 ALA A 106 PHE A 107 14 -130.26 REMARK 500 LEU A 110 PRO A 111 14 -142.91 REMARK 500 ALA A 106 PHE A 107 15 -129.08 REMARK 500 LEU A 110 PRO A 111 15 -143.15 REMARK 500 LYS A 153 GLU A 154 15 146.46 REMARK 500 ALA A 106 PHE A 107 16 -131.66 REMARK 500 LEU A 110 PRO A 111 16 -144.93 REMARK 500 LYS A 153 GLU A 154 16 148.08 REMARK 500 ALA A 106 PHE A 107 17 -130.76 REMARK 500 PRO A 111 GLN A 112 17 -133.07 REMARK 500 GLN A 112 ASN A 113 17 -143.08 REMARK 500 ALA A 106 PHE A 107 18 -131.23 REMARK 500 PRO A 111 GLN A 112 18 -133.54 REMARK 500 GLN A 112 ASN A 113 18 -143.30 REMARK 500 ALA A 106 PHE A 107 19 -129.26 REMARK 500 PRO A 111 GLN A 112 19 -136.52 REMARK 500 GLN A 112 ASN A 113 19 -148.54 REMARK 500 ALA A 106 PHE A 107 20 -129.20 REMARK 500 LEU A 110 PRO A 111 20 -143.64 REMARK 500 LYS A 153 GLU A 154 20 147.86 REMARK 500 ALA A 106 PHE A 107 21 -129.40 REMARK 500 REMARK 500 THIS ENTRY HAS 68 NON CIS, NON-TRANS OMEGA OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6855 RELATED DB: BMRB DBREF 2O2O A 92 168 UNP Q96B97 SH3K1_HUMAN 92 168 SEQADV 2O2O SER A 83 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O MET A 84 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O THR A 85 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O GLY A 86 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O GLY A 87 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O GLN A 88 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O GLN A 89 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O MET A 90 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O GLY A 91 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O HIS A 169 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O HIS A 170 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O HIS A 171 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O HIS A 172 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O HIS A 173 UNP Q96B97 EXPRESSION TAG SEQADV 2O2O HIS A 174 UNP Q96B97 EXPRESSION TAG SEQRES 1 A 92 SER MET THR GLY GLY GLN GLN MET GLY THR ASN LYS ARG SEQRES 2 A 92 GLY GLU ARG ARG ARG ARG ARG CYS GLN VAL ALA PHE SER SEQRES 3 A 92 TYR LEU PRO GLN ASN ASP ASP GLU LEU GLU LEU LYS VAL SEQRES 4 A 92 GLY ASP ILE ILE GLU VAL VAL GLY GLU VAL GLU GLU GLY SEQRES 5 A 92 TRP TRP GLU GLY VAL LEU ASN GLY LYS THR GLY MET PHE SEQRES 6 A 92 PRO SER ASN PHE ILE LYS GLU LEU SER GLY GLU SER ASP SEQRES 7 A 92 GLU LEU GLY ILE SER GLN ASP GLU HIS HIS HIS HIS HIS SEQRES 8 A 92 HIS HELIX 1 1 GLY A 129 GLU A 133 5 5 SHEET 1 A 3 ILE A 124 GLU A 126 0 SHEET 2 A 3 ARG A 102 VAL A 105 -1 N CYS A 103 O ILE A 125 SHEET 3 A 3 ILE A 152 LYS A 153 -1 O LYS A 153 N GLN A 104 SHEET 1 B 2 VAL A 139 LEU A 140 0 SHEET 2 B 2 LYS A 143 THR A 144 -1 O LYS A 143 N LEU A 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1