HEADER UNKNOWN FUNCTION 21-DEC-06 2OD4 TITLE CRYSTAL STRUCTURE OF A DIMERIC FERREDOXIN-LIKE PROTEIN TITLE 2 (JCVI_PEP_1096665735785) FROM UNCULTURED MARINE ORGANISM AT 1.70 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED MARINE ORGANISM; SOURCE 3 ORGANISM_TAXID: 360281; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 OTHER_DETAILS: SYNTHETIC GENE: THE GENE PRODUCT WAS BASED ON SOURCE 8 JCVI_PEP_1096665735785 FROM THE SORCERER II GLOBAL OCEAN SAMPLING SOURCE 9 EXPERIMENT KEYWDS METAGENOMICS TARGET, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 27-DEC-23 2OD4 1 REMARK LINK REVDAT 7 25-OCT-17 2OD4 1 REMARK REVDAT 6 18-OCT-17 2OD4 1 REMARK REVDAT 5 13-JUL-11 2OD4 1 VERSN REVDAT 4 23-MAR-11 2OD4 1 HEADER TITLE KEYWDS REVDAT 3 24-FEB-09 2OD4 1 VERSN REVDAT 2 24-APR-07 2OD4 1 SOURCE REVDAT 1 23-JAN-07 2OD4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN JRNL TITL 2 (JCVI_PEP_1096665735785) FROM AN ENVIRONMENTAL METAGENOME JRNL TITL 3 (UNIDENTIFIED MARINE MICROBE), SORCERER II GLOBAL OCEAN JRNL TITL 4 SAMPLING EXPERIMENT AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 22774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1172 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1608 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1619 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.63000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.644 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1692 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1158 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2297 ; 1.415 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2836 ; 0.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 5.445 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;36.483 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 308 ;13.235 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1867 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 345 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 290 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1168 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 851 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 953 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.285 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 2.427 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 411 ; 0.503 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1696 ; 2.832 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 740 ; 5.384 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 594 ; 7.614 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0350 36.6640 29.8930 REMARK 3 T TENSOR REMARK 3 T11: -0.1134 T22: -0.0025 REMARK 3 T33: 0.0122 T12: 0.0212 REMARK 3 T13: -0.0262 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.3985 L22: 0.5512 REMARK 3 L33: 2.7460 L12: 0.4561 REMARK 3 L13: 0.0990 L23: 0.3953 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: 0.0179 S13: -0.0179 REMARK 3 S21: -0.0763 S22: 0.0084 S23: -0.0474 REMARK 3 S31: -0.1476 S32: -0.0776 S33: 0.0184 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9800 25.3830 43.7510 REMARK 3 T TENSOR REMARK 3 T11: -0.0861 T22: -0.0072 REMARK 3 T33: 0.0187 T12: 0.0104 REMARK 3 T13: -0.0187 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.3023 L22: 0.7154 REMARK 3 L33: 1.2012 L12: -0.0235 REMARK 3 L13: -0.2899 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.0186 S13: -0.0115 REMARK 3 S21: 0.0140 S22: -0.0012 S23: -0.0187 REMARK 3 S31: 0.1186 S32: -0.0974 S33: 0.0056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. AN EDO MOLECULE FROM THE CRYO SOLUTION IS MODELED. REMARK 3 4. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2OD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97966 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.892 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LI2SO4, 2.5M NACL, 0.1M ACETATE REMARK 280 PH 4.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.89500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1,2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 53 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 86 O HOH A 128 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 33 -53.84 -120.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 367439 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 (1) THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. REMARK 999 (2) THE SEQUENCE OF THE PROTEIN WAS NOT AVAILABLE IN THE REMARK 999 UNP DATABASE AT THE TIME OF PROCESSING. REMARK 999 (3) PRODUCT OF THE EXPRESSED SYNTHETIC GENE WAS BASED ON REMARK 999 THE PREDICTED SEQUENCE OF ACCESSION ID REMARK 999 JCVI_PEP_1096665735785 FROM THE J. CRAIG VENTER INSTITUTE. DBREF 2OD4 A 0 100 PDB 2OD4 2OD4 0 100 DBREF 2OD4 B 0 100 PDB 2OD4 2OD4 0 100 SEQRES 1 A 101 GLY MSE PHE ALA GLY SER ILE PRO MSE TYR ILE ARG VAL SEQRES 2 A 101 VAL SER ILE THR ALA GLN SER LYS LEU GLN PHE ASP MSE SEQRES 3 A 101 THR VAL THR TYR PHE GLU ASN VAL TRP SER PRO LYS VAL SEQRES 4 A 101 ILE SER LEU GLY ALA ILE SER ALA GLU PHE VAL GLN SER SEQRES 5 A 101 ASN GLU ASN SER GLY MSE TYR ILE ILE HIS TYR PRO ASP SEQRES 6 A 101 LYS GLN THR ALA ILE SER VAL PHE ASP LYS ILE LYS PRO SEQRES 7 A 101 GLU VAL ASP GLU VAL ARG THR GLN ASN ARG ILE GLN ILE SEQRES 8 A 101 THR GLU GLY LYS ARG LEU PHE ARG VAL ASP SEQRES 1 B 101 GLY MSE PHE ALA GLY SER ILE PRO MSE TYR ILE ARG VAL SEQRES 2 B 101 VAL SER ILE THR ALA GLN SER LYS LEU GLN PHE ASP MSE SEQRES 3 B 101 THR VAL THR TYR PHE GLU ASN VAL TRP SER PRO LYS VAL SEQRES 4 B 101 ILE SER LEU GLY ALA ILE SER ALA GLU PHE VAL GLN SER SEQRES 5 B 101 ASN GLU ASN SER GLY MSE TYR ILE ILE HIS TYR PRO ASP SEQRES 6 B 101 LYS GLN THR ALA ILE SER VAL PHE ASP LYS ILE LYS PRO SEQRES 7 B 101 GLU VAL ASP GLU VAL ARG THR GLN ASN ARG ILE GLN ILE SEQRES 8 B 101 THR GLU GLY LYS ARG LEU PHE ARG VAL ASP MODRES 2OD4 MSE A 1 MET SELENOMETHIONINE MODRES 2OD4 MSE A 8 MET SELENOMETHIONINE MODRES 2OD4 MSE A 25 MET SELENOMETHIONINE MODRES 2OD4 MSE A 57 MET SELENOMETHIONINE MODRES 2OD4 MSE B 1 MET SELENOMETHIONINE MODRES 2OD4 MSE B 8 MET SELENOMETHIONINE MODRES 2OD4 MSE B 25 MET SELENOMETHIONINE MODRES 2OD4 MSE B 57 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 8 8 HET MSE A 25 8 HET MSE A 57 13 HET MSE B 1 8 HET MSE B 8 8 HET MSE B 25 8 HET MSE B 57 8 HET CL A 101 1 HET CL A 102 1 HET EDO A 103 4 HET CL B 101 1 HET CL B 102 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CL 4(CL 1-) FORMUL 5 EDO C2 H6 O2 FORMUL 8 HOH *188(H2 O) HELIX 1 1 SER A 19 VAL A 33 1 15 HELIX 2 2 VAL A 33 GLY A 42 1 10 HELIX 3 3 ASP A 64 ASN A 86 1 23 HELIX 4 4 SER B 19 VAL B 33 1 15 HELIX 5 5 VAL B 33 GLY B 42 1 10 HELIX 6 6 ASP B 64 LYS B 74 1 11 HELIX 7 7 ILE B 75 ASN B 86 1 12 SHEET 1 A 9 TYR A 9 THR A 16 0 SHEET 2 A 9 SER A 55 TYR A 62 -1 O ILE A 60 N ARG A 11 SHEET 3 A 9 SER A 45 ASN A 52 -1 N GLU A 47 O ILE A 59 SHEET 4 A 9 ARG B 87 VAL B 99 -1 O LEU B 96 N PHE A 48 SHEET 5 A 9 TYR B 9 THR B 16 -1 N SER B 14 O GLN B 89 SHEET 6 A 9 SER B 55 TYR B 62 -1 O TYR B 58 N VAL B 13 SHEET 7 A 9 SER B 45 ASN B 52 -1 N GLU B 47 O ILE B 59 SHEET 8 A 9 ARG A 87 VAL A 99 -1 N VAL A 99 O ALA B 46 SHEET 9 A 9 TYR A 9 THR A 16 -1 N SER A 14 O GLN A 89 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N PHE A 2 1555 1555 1.33 LINK C PRO A 7 N MSE A 8 1555 1555 1.34 LINK C MSE A 8 N TYR A 9 1555 1555 1.34 LINK C ASP A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N THR A 26 1555 1555 1.33 LINK C GLY A 56 N MSE A 57 1555 1555 1.32 LINK C MSE A 57 N TYR A 58 1555 1555 1.32 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N PHE B 2 1555 1555 1.32 LINK C PRO B 7 N MSE B 8 1555 1555 1.32 LINK C MSE B 8 N TYR B 9 1555 1555 1.32 LINK C ASP B 24 N MSE B 25 1555 1555 1.34 LINK C MSE B 25 N THR B 26 1555 1555 1.34 LINK C GLY B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N TYR B 58 1555 1555 1.33 SITE 1 AC1 4 ARG B 11 TRP B 34 ILE B 60 TYR B 62 SITE 1 AC2 3 ARG A 11 TYR A 62 EDO A 103 SITE 1 AC3 3 ARG A 83 GLN A 89 ILE A 90 SITE 1 AC4 2 ARG A 95 ARG B 87 SITE 1 AC5 5 ARG A 11 TRP A 34 PHE A 72 ILE A 75 SITE 2 AC5 5 CL A 101 CRYST1 31.890 77.790 43.810 90.00 102.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031360 0.000000 0.007040 0.00000 SCALE2 0.000000 0.012850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023400 0.00000