data_2ODB # _entry.id 2ODB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ODB pdb_00002odb 10.2210/pdb2odb/pdb RCSB RCSB040991 ? ? WWPDB D_1000040991 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1GRN _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE CDC42/CDC42GAP/ALF3 COMPLEX.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ODB _pdbx_database_status.recvd_initial_deposition_date 2006-12-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ugochukwu, E.' 1 'Yang, X.' 2 'Elkins, J.' 3 'Soundararajan, M.' 4 'Pike, A.C.W.' 5 'Eswaran, J.' 6 'Burgess, N.' 7 'Debreczeni, J.E.' 8 'Sundstrom, M.' 9 'Arrowsmith, C.' 10 'Weigelt, J.' 11 'Edwards, A.' 12 'Gileadi, O.' 13 'von Delft, F.' 14 'Knapp, S.' 15 'Doyle, D.' 16 'Structural Genomics Consortium (SGC)' 17 # _citation.id primary _citation.title 'The crystal structure of human cdc42 in complex with the CRIB domain of human p21-activated kinase 6 (PAK6)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, X.' 1 ? primary 'Ugochukwu, E.' 2 ? primary 'Elkins, J.' 3 ? primary 'Soundararajan, M.' 4 ? primary 'Eswaran, J.' 5 ? primary 'Pike, A.C.W.' 6 ? primary 'Burgess, N.' 7 ? primary 'Debreczeni, J.E.' 8 ? primary 'Gileadi, O.' 9 ? primary 'Knapp, S.' 10 ? primary 'Doyle, D.' 11 ? # _cell.entry_id 2ODB _cell.length_a 162.366 _cell.length_b 162.366 _cell.length_c 45.968 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ODB _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Human Cell Division Cycle 42 (CDC42)' 21370.660 1 ? ? ? ? 2 polymer syn 'Serine/threonine-protein kinase PAK 6' 4066.510 1 ? ? 'PAK6 CRIB domain' ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 6 non-polymer syn 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 521.208 1 ? ? ? ? 7 water nat water 18.015 44 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'p21-activated kinase 6, PAK-6' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA LTQKGLKNVFDEAILAALEPPEPKKSRRCVLL ; ;SMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA LTQKGLKNVFDEAILAALEPPEPKKSRRCVLL ; A ? 2 'polypeptide(L)' no no EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILD EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILD B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLN n 1 4 THR n 1 5 ILE n 1 6 LYS n 1 7 CYS n 1 8 VAL n 1 9 VAL n 1 10 VAL n 1 11 GLY n 1 12 ASP n 1 13 GLY n 1 14 ALA n 1 15 VAL n 1 16 GLY n 1 17 LYS n 1 18 THR n 1 19 CYS n 1 20 LEU n 1 21 LEU n 1 22 ILE n 1 23 SER n 1 24 TYR n 1 25 THR n 1 26 THR n 1 27 ASN n 1 28 LYS n 1 29 PHE n 1 30 PRO n 1 31 SER n 1 32 GLU n 1 33 TYR n 1 34 VAL n 1 35 PRO n 1 36 THR n 1 37 VAL n 1 38 PHE n 1 39 ASP n 1 40 ASN n 1 41 TYR n 1 42 ALA n 1 43 VAL n 1 44 THR n 1 45 VAL n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 GLU n 1 51 PRO n 1 52 TYR n 1 53 THR n 1 54 LEU n 1 55 GLY n 1 56 LEU n 1 57 PHE n 1 58 ASP n 1 59 THR n 1 60 ALA n 1 61 GLY n 1 62 GLN n 1 63 GLU n 1 64 ASP n 1 65 TYR n 1 66 ASP n 1 67 ARG n 1 68 LEU n 1 69 ARG n 1 70 PRO n 1 71 LEU n 1 72 SER n 1 73 TYR n 1 74 PRO n 1 75 GLN n 1 76 THR n 1 77 ASP n 1 78 VAL n 1 79 PHE n 1 80 LEU n 1 81 VAL n 1 82 CYS n 1 83 PHE n 1 84 SER n 1 85 VAL n 1 86 VAL n 1 87 SER n 1 88 PRO n 1 89 SER n 1 90 SER n 1 91 PHE n 1 92 GLU n 1 93 ASN n 1 94 VAL n 1 95 LYS n 1 96 GLU n 1 97 LYS n 1 98 TRP n 1 99 VAL n 1 100 PRO n 1 101 GLU n 1 102 ILE n 1 103 THR n 1 104 HIS n 1 105 HIS n 1 106 CYS n 1 107 PRO n 1 108 LYS n 1 109 THR n 1 110 PRO n 1 111 PHE n 1 112 LEU n 1 113 LEU n 1 114 VAL n 1 115 GLY n 1 116 THR n 1 117 GLN n 1 118 ILE n 1 119 ASP n 1 120 LEU n 1 121 ARG n 1 122 ASP n 1 123 ASP n 1 124 PRO n 1 125 SER n 1 126 THR n 1 127 ILE n 1 128 GLU n 1 129 LYS n 1 130 LEU n 1 131 ALA n 1 132 LYS n 1 133 ASN n 1 134 LYS n 1 135 GLN n 1 136 LYS n 1 137 PRO n 1 138 ILE n 1 139 THR n 1 140 PRO n 1 141 GLU n 1 142 THR n 1 143 ALA n 1 144 GLU n 1 145 LYS n 1 146 LEU n 1 147 ALA n 1 148 ARG n 1 149 ASP n 1 150 LEU n 1 151 LYS n 1 152 ALA n 1 153 VAL n 1 154 LYS n 1 155 TYR n 1 156 VAL n 1 157 GLU n 1 158 CYS n 1 159 SER n 1 160 ALA n 1 161 LEU n 1 162 THR n 1 163 GLN n 1 164 LYS n 1 165 GLY n 1 166 LEU n 1 167 LYS n 1 168 ASN n 1 169 VAL n 1 170 PHE n 1 171 ASP n 1 172 GLU n 1 173 ALA n 1 174 ILE n 1 175 LEU n 1 176 ALA n 1 177 ALA n 1 178 LEU n 1 179 GLU n 1 180 PRO n 1 181 PRO n 1 182 GLU n 1 183 PRO n 1 184 LYS n 1 185 LYS n 1 186 SER n 1 187 ARG n 1 188 ARG n 1 189 CYS n 1 190 VAL n 1 191 LEU n 1 192 LEU n 2 1 GLU n 2 2 ILE n 2 3 SER n 2 4 ALA n 2 5 PRO n 2 6 GLN n 2 7 ASN n 2 8 PHE n 2 9 GLN n 2 10 HIS n 2 11 ARG n 2 12 VAL n 2 13 HIS n 2 14 THR n 2 15 SER n 2 16 PHE n 2 17 ASP n 2 18 PRO n 2 19 LYS n 2 20 GLU n 2 21 GLY n 2 22 LYS n 2 23 PHE n 2 24 VAL n 2 25 GLY n 2 26 LEU n 2 27 PRO n 2 28 PRO n 2 29 GLN n 2 30 TRP n 2 31 GLN n 2 32 ASN n 2 33 ILE n 2 34 LEU n 2 35 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene CDC42 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PAK6_HUMAN Q9NQU5 2 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNILD 11 ? 2 UNP CDC42_HUMAN P60953 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ODB B 1 ? 35 ? Q9NQU5 11 ? 45 ? 11 45 2 2 2ODB A 2 ? 182 ? P60953 1 ? 181 ? 1 181 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GCP non-polymer . 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' ? 'C11 H18 N5 O13 P3' 521.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ODB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.44 _exptl_crystal.density_percent_sol 64.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.1M acetate, 2M (NH4)2SO4, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2006-11-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97956 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 0.97956 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2ODB _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 40.59 _reflns.number_all ? _reflns.number_obs 14484 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value 0.071 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.53 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.502 _reflns_shell.pdbx_Rsym_value 0.502 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2ODB _refine.ls_number_reflns_obs 13737 _refine.ls_number_reflns_all 13737 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.59 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.97 _refine.ls_R_factor_obs 0.20484 _refine.ls_R_factor_all 0.20484 _refine.ls_R_factor_R_work 0.2034 _refine.ls_R_factor_R_free 0.23184 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 732 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.B_iso_mean 47.158 _refine.aniso_B[1][1] -4.96 _refine.aniso_B[2][2] -4.96 _refine.aniso_B[3][3] 7.44 _refine.aniso_B[1][2] -2.48 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'pdb entry 1GRN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.249 _refine.pdbx_overall_ESU_R_Free 0.200 _refine.overall_SU_ML 0.182 _refine.overall_SU_B 14.923 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1625 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 1718 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 40.59 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1711 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1099 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.466 2.000 ? 2348 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.920 3.000 ? 2713 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.655 5.000 ? 210 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.341 25.224 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.071 15.000 ? 259 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.291 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.078 0.200 ? 270 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1857 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 317 'X-RAY DIFFRACTION' ? r_nbd_refined 0.201 0.200 ? 283 'X-RAY DIFFRACTION' ? r_nbd_other 0.182 0.200 ? 1064 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.176 0.200 ? 817 'X-RAY DIFFRACTION' ? r_nbtor_other 0.086 0.200 ? 813 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.144 0.200 ? 59 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.125 0.200 ? 2 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.247 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.219 0.200 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.081 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.496 1.500 ? 1109 'X-RAY DIFFRACTION' ? r_mcbond_other 0.083 1.500 ? 417 'X-RAY DIFFRACTION' ? r_mcangle_it 0.792 2.000 ? 1736 'X-RAY DIFFRACTION' ? r_scbond_it 1.284 3.000 ? 716 'X-RAY DIFFRACTION' ? r_scangle_it 1.965 4.500 ? 612 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 984 _refine_ls_shell.R_factor_R_work 0.297 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.364 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ODB _struct.title 'The crystal structure of human cdc42 in complex with the CRIB domain of human p21-activated kinase 6 (PAK6)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ODB _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'small GTPase, CRIB, kinase, protein-protein complex, Structural Genomics, Structural Genomics Consortium, SGC, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 5 ? I N N 7 ? J N N 7 ? # _struct_biol.id 1 _struct_biol.details 'One monomer of each protein in the asymmetric unit' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 16 ? ASN A 27 ? GLY A 15 ASN A 26 1 ? 12 HELX_P HELX_P2 2 GLN A 62 ? ASP A 66 ? GLN A 61 ASP A 65 5 ? 5 HELX_P HELX_P3 3 LEU A 68 ? TYR A 73 ? LEU A 67 TYR A 72 5 ? 6 HELX_P HELX_P4 4 SER A 87 ? LYS A 97 ? SER A 86 LYS A 96 1 ? 11 HELX_P HELX_P5 5 LYS A 97 ? CYS A 106 ? LYS A 96 CYS A 105 1 ? 10 HELX_P HELX_P6 6 GLN A 117 ? ARG A 121 ? GLN A 116 ARG A 120 5 ? 5 HELX_P HELX_P7 7 ASP A 123 ? LYS A 132 ? ASP A 122 LYS A 131 1 ? 10 HELX_P HELX_P8 8 THR A 139 ? LYS A 151 ? THR A 138 LYS A 150 1 ? 13 HELX_P HELX_P9 9 GLY A 165 ? GLU A 179 ? GLY A 164 GLU A 178 1 ? 15 HELX_P HELX_P10 10 PRO B 27 ? ASP B 35 ? PRO B 37 ASP B 45 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A THR 18 OG1 ? ? ? 1_555 D MG . MG ? ? A THR 17 A MG 205 1_555 ? ? ? ? ? ? ? 1.947 ? ? metalc2 metalc ? ? A THR 36 OG1 ? ? ? 1_555 D MG . MG ? ? A THR 35 A MG 205 1_555 ? ? ? ? ? ? ? 2.007 ? ? metalc3 metalc ? ? G GCP . O1G ? ? ? 1_555 D MG . MG ? ? A GCP 200 A MG 205 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc4 metalc ? ? G GCP . O2B ? ? ? 1_555 D MG . MG ? ? A GCP 200 A MG 205 1_555 ? ? ? ? ? ? ? 2.052 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 205 A HOH 207 1_555 ? ? ? ? ? ? ? 1.818 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 205 A HOH 209 1_555 ? ? ? ? ? ? ? 2.050 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 150 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 149 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 LYS _struct_mon_prot_cis.pdbx_label_seq_id_2 151 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 LYS _struct_mon_prot_cis.pdbx_auth_seq_id_2 150 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 25.70 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 155 ? GLU A 157 ? TYR A 154 GLU A 156 A 2 PHE A 111 ? THR A 116 ? PHE A 110 THR A 115 A 3 VAL A 78 ? SER A 84 ? VAL A 77 SER A 83 A 4 THR A 4 ? VAL A 10 ? THR A 3 VAL A 9 A 5 GLU A 50 ? THR A 59 ? GLU A 49 THR A 58 A 6 PHE A 38 ? ILE A 47 ? PHE A 37 ILE A 46 A 7 GLN B 6 ? ASP B 17 ? GLN B 16 ASP B 27 A 8 LYS B 22 ? VAL B 24 ? LYS B 32 VAL B 34 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 156 ? O VAL A 155 N LEU A 113 ? N LEU A 112 A 2 3 O THR A 116 ? O THR A 115 N PHE A 83 ? N PHE A 82 A 3 4 O CYS A 82 ? O CYS A 81 N VAL A 10 ? N VAL A 9 A 4 5 N ILE A 5 ? N ILE A 4 O GLY A 55 ? O GLY A 54 A 5 6 O LEU A 54 ? O LEU A 53 N VAL A 43 ? N VAL A 42 A 6 7 N THR A 44 ? N THR A 43 O GLN B 6 ? O GLN B 16 A 7 8 N SER B 15 ? N SER B 25 O VAL B 24 ? O VAL B 34 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 204 ? 1 'BINDING SITE FOR RESIDUE CL A 204' AC2 Software A MG 205 ? 5 'BINDING SITE FOR RESIDUE MG A 205' AC3 Software B SO4 201 ? 4 'BINDING SITE FOR RESIDUE SO4 B 201' AC4 Software A SO4 202 ? 5 'BINDING SITE FOR RESIDUE SO4 A 202' AC5 Software A SO4 203 ? 8 'BINDING SITE FOR RESIDUE SO4 A 203' AC6 Software A GCP 200 ? 24 'BINDING SITE FOR RESIDUE GCP A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 GLN A 3 ? GLN A 2 . ? 12_544 ? 2 AC2 5 THR A 18 ? THR A 17 . ? 1_555 ? 3 AC2 5 THR A 36 ? THR A 35 . ? 1_555 ? 4 AC2 5 GCP G . ? GCP A 200 . ? 1_555 ? 5 AC2 5 HOH I . ? HOH A 207 . ? 1_555 ? 6 AC2 5 HOH I . ? HOH A 209 . ? 1_555 ? 7 AC3 4 ALA B 4 ? ALA B 14 . ? 1_555 ? 8 AC3 4 ALA B 4 ? ALA B 14 . ? 9_554 ? 9 AC3 4 HOH J . ? HOH B 212 . ? 1_555 ? 10 AC3 4 HOH J . ? HOH B 212 . ? 9_554 ? 11 AC4 5 GLY A 48 ? GLY A 47 . ? 1_555 ? 12 AC4 5 GLU B 1 ? GLU B 11 . ? 1_555 ? 13 AC4 5 GLN B 6 ? GLN B 16 . ? 9_554 ? 14 AC4 5 ASN B 7 ? ASN B 17 . ? 9_554 ? 15 AC4 5 HOH J . ? HOH B 210 . ? 9_554 ? 16 AC5 8 LYS A 6 ? LYS A 5 . ? 1_555 ? 17 AC5 8 PHE A 57 ? PHE A 56 . ? 1_555 ? 18 AC5 8 PRO A 74 ? PRO A 73 . ? 12_544 ? 19 AC5 8 GLN A 75 ? GLN A 74 . ? 12_544 ? 20 AC5 8 HOH I . ? HOH A 220 . ? 1_555 ? 21 AC5 8 HOH I . ? HOH A 228 . ? 1_555 ? 22 AC5 8 HOH I . ? HOH A 234 . ? 1_555 ? 23 AC5 8 GLN B 29 ? GLN B 39 . ? 1_555 ? 24 AC6 24 GLY A 13 ? GLY A 12 . ? 1_555 ? 25 AC6 24 ALA A 14 ? ALA A 13 . ? 1_555 ? 26 AC6 24 VAL A 15 ? VAL A 14 . ? 1_555 ? 27 AC6 24 GLY A 16 ? GLY A 15 . ? 1_555 ? 28 AC6 24 LYS A 17 ? LYS A 16 . ? 1_555 ? 29 AC6 24 THR A 18 ? THR A 17 . ? 1_555 ? 30 AC6 24 CYS A 19 ? CYS A 18 . ? 1_555 ? 31 AC6 24 PHE A 29 ? PHE A 28 . ? 1_555 ? 32 AC6 24 TYR A 33 ? TYR A 32 . ? 1_555 ? 33 AC6 24 PRO A 35 ? PRO A 34 . ? 1_555 ? 34 AC6 24 THR A 36 ? THR A 35 . ? 1_555 ? 35 AC6 24 GLY A 61 ? GLY A 60 . ? 1_555 ? 36 AC6 24 GLN A 117 ? GLN A 116 . ? 1_555 ? 37 AC6 24 ASP A 119 ? ASP A 118 . ? 1_555 ? 38 AC6 24 LEU A 120 ? LEU A 119 . ? 1_555 ? 39 AC6 24 SER A 159 ? SER A 158 . ? 1_555 ? 40 AC6 24 ALA A 160 ? ALA A 159 . ? 1_555 ? 41 AC6 24 LEU A 161 ? LEU A 160 . ? 1_555 ? 42 AC6 24 MG D . ? MG A 205 . ? 1_555 ? 43 AC6 24 HOH I . ? HOH A 207 . ? 1_555 ? 44 AC6 24 HOH I . ? HOH A 209 . ? 1_555 ? 45 AC6 24 HOH I . ? HOH A 214 . ? 1_555 ? 46 AC6 24 HOH I . ? HOH A 222 . ? 1_555 ? 47 AC6 24 HOH I . ? HOH A 224 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ODB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ODB _atom_sites.fract_transf_matrix[1][1] 0.006159 _atom_sites.fract_transf_matrix[1][2] 0.003556 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007112 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021754 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 GLN 3 2 2 GLN GLN A . n A 1 4 THR 4 3 3 THR THR A . n A 1 5 ILE 5 4 4 ILE ILE A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 CYS 7 6 6 CYS CYS A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 ASP 12 11 11 ASP ASP A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 CYS 19 18 18 CYS CYS A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 TYR 24 23 23 TYR TYR A . n A 1 25 THR 25 24 24 THR THR A . n A 1 26 THR 26 25 25 THR THR A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 PRO 30 29 29 PRO PRO A . n A 1 31 SER 31 30 30 SER SER A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 TYR 33 32 32 TYR TYR A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 PHE 38 37 37 PHE PHE A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 ASN 40 39 39 ASN ASN A . n A 1 41 TYR 41 40 40 TYR TYR A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 THR 44 43 43 THR THR A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 MET 46 45 45 MET MET A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 PRO 51 50 50 PRO PRO A . n A 1 52 TYR 52 51 51 TYR TYR A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 GLY 55 54 54 GLY GLY A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 GLN 62 61 61 GLN GLN A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 TYR 65 64 64 TYR TYR A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 PRO 70 69 69 PRO PRO A . n A 1 71 LEU 71 70 70 LEU LEU A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 TYR 73 72 72 TYR TYR A . n A 1 74 PRO 74 73 73 PRO PRO A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 PHE 79 78 78 PHE PHE A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 CYS 82 81 81 CYS CYS A . n A 1 83 PHE 83 82 82 PHE PHE A . n A 1 84 SER 84 83 83 SER SER A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 VAL 86 85 85 VAL VAL A . n A 1 87 SER 87 86 86 SER SER A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 GLU 92 91 91 GLU GLU A . n A 1 93 ASN 93 92 92 ASN ASN A . n A 1 94 VAL 94 93 93 VAL VAL A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 LYS 97 96 96 LYS LYS A . n A 1 98 TRP 98 97 97 TRP TRP A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 PRO 100 99 99 PRO PRO A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 ILE 102 101 101 ILE ILE A . n A 1 103 THR 103 102 102 THR THR A . n A 1 104 HIS 104 103 103 HIS HIS A . n A 1 105 HIS 105 104 104 HIS HIS A . n A 1 106 CYS 106 105 105 CYS CYS A . n A 1 107 PRO 107 106 106 PRO PRO A . n A 1 108 LYS 108 107 107 LYS LYS A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 PRO 110 109 109 PRO PRO A . n A 1 111 PHE 111 110 110 PHE PHE A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 GLY 115 114 114 GLY GLY A . n A 1 116 THR 116 115 115 THR THR A . n A 1 117 GLN 117 116 116 GLN GLN A . n A 1 118 ILE 118 117 117 ILE ILE A . n A 1 119 ASP 119 118 118 ASP ASP A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 ARG 121 120 120 ARG ARG A . n A 1 122 ASP 122 121 121 ASP ASP A . n A 1 123 ASP 123 122 122 ASP ASP A . n A 1 124 PRO 124 123 123 PRO PRO A . n A 1 125 SER 125 124 124 SER SER A . n A 1 126 THR 126 125 125 THR THR A . n A 1 127 ILE 127 126 126 ILE ILE A . n A 1 128 GLU 128 127 127 GLU GLU A . n A 1 129 LYS 129 128 128 LYS LYS A . n A 1 130 LEU 130 129 129 LEU LEU A . n A 1 131 ALA 131 130 130 ALA ALA A . n A 1 132 LYS 132 131 131 LYS LYS A . n A 1 133 ASN 133 132 132 ASN ASN A . n A 1 134 LYS 134 133 133 LYS LYS A . n A 1 135 GLN 135 134 134 GLN GLN A . n A 1 136 LYS 136 135 135 LYS LYS A . n A 1 137 PRO 137 136 136 PRO PRO A . n A 1 138 ILE 138 137 137 ILE ILE A . n A 1 139 THR 139 138 138 THR THR A . n A 1 140 PRO 140 139 139 PRO PRO A . n A 1 141 GLU 141 140 140 GLU GLU A . n A 1 142 THR 142 141 141 THR THR A . n A 1 143 ALA 143 142 142 ALA ALA A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 LYS 145 144 144 LYS LYS A . n A 1 146 LEU 146 145 145 LEU LEU A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 ARG 148 147 147 ARG ARG A . n A 1 149 ASP 149 148 148 ASP ASP A . n A 1 150 LEU 150 149 149 LEU LEU A . n A 1 151 LYS 151 150 150 LYS LYS A . n A 1 152 ALA 152 151 151 ALA ALA A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 LYS 154 153 153 LYS LYS A . n A 1 155 TYR 155 154 154 TYR TYR A . n A 1 156 VAL 156 155 155 VAL VAL A . n A 1 157 GLU 157 156 156 GLU GLU A . n A 1 158 CYS 158 157 157 CYS CYS A . n A 1 159 SER 159 158 158 SER SER A . n A 1 160 ALA 160 159 159 ALA ALA A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 THR 162 161 161 THR THR A . n A 1 163 GLN 163 162 162 GLN GLN A . n A 1 164 LYS 164 163 163 LYS LYS A . n A 1 165 GLY 165 164 164 GLY GLY A . n A 1 166 LEU 166 165 165 LEU LEU A . n A 1 167 LYS 167 166 166 LYS LYS A . n A 1 168 ASN 168 167 167 ASN ASN A . n A 1 169 VAL 169 168 168 VAL VAL A . n A 1 170 PHE 170 169 169 PHE PHE A . n A 1 171 ASP 171 170 170 ASP ASP A . n A 1 172 GLU 172 171 171 GLU GLU A . n A 1 173 ALA 173 172 172 ALA ALA A . n A 1 174 ILE 174 173 173 ILE ILE A . n A 1 175 LEU 175 174 174 LEU LEU A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 ALA 177 176 176 ALA ALA A . n A 1 178 LEU 178 177 177 LEU LEU A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 PRO 180 179 ? ? ? A . n A 1 181 PRO 181 180 ? ? ? A . n A 1 182 GLU 182 181 ? ? ? A . n A 1 183 PRO 183 182 ? ? ? A . n A 1 184 LYS 184 183 ? ? ? A . n A 1 185 LYS 185 184 ? ? ? A . n A 1 186 SER 186 185 ? ? ? A . n A 1 187 ARG 187 186 ? ? ? A . n A 1 188 ARG 188 187 ? ? ? A . n A 1 189 CYS 189 188 ? ? ? A . n A 1 190 VAL 190 189 ? ? ? A . n A 1 191 LEU 191 190 ? ? ? A . n A 1 192 LEU 192 191 ? ? ? A . n B 2 1 GLU 1 11 11 GLU GLU B . n B 2 2 ILE 2 12 12 ILE ILE B . n B 2 3 SER 3 13 13 SER SER B . n B 2 4 ALA 4 14 14 ALA ALA B . n B 2 5 PRO 5 15 15 PRO PRO B . n B 2 6 GLN 6 16 16 GLN GLN B . n B 2 7 ASN 7 17 17 ASN ASN B . n B 2 8 PHE 8 18 18 PHE PHE B . n B 2 9 GLN 9 19 19 GLN GLN B . n B 2 10 HIS 10 20 20 HIS HIS B . n B 2 11 ARG 11 21 21 ARG ARG B . n B 2 12 VAL 12 22 22 VAL VAL B . n B 2 13 HIS 13 23 23 HIS HIS B . n B 2 14 THR 14 24 24 THR THR B . n B 2 15 SER 15 25 25 SER SER B . n B 2 16 PHE 16 26 26 PHE PHE B . n B 2 17 ASP 17 27 27 ASP ASP B . n B 2 18 PRO 18 28 28 PRO PRO B . n B 2 19 LYS 19 29 29 LYS LYS B . n B 2 20 GLU 20 30 30 GLU GLU B . n B 2 21 GLY 21 31 31 GLY GLY B . n B 2 22 LYS 22 32 32 LYS LYS B . n B 2 23 PHE 23 33 33 PHE PHE B . n B 2 24 VAL 24 34 34 VAL VAL B . n B 2 25 GLY 25 35 35 GLY GLY B . n B 2 26 LEU 26 36 36 LEU LEU B . n B 2 27 PRO 27 37 37 PRO PRO B . n B 2 28 PRO 28 38 38 PRO PRO B . n B 2 29 GLN 29 39 39 GLN GLN B . n B 2 30 TRP 30 40 40 TRP TRP B . n B 2 31 GLN 31 41 41 GLN GLN B . n B 2 32 ASN 32 42 42 ASN ASN B . n B 2 33 ILE 33 43 43 ILE ILE B . n B 2 34 LEU 34 44 44 LEU LEU B . n B 2 35 ASP 35 45 45 ASP ASP B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 204 204 CL CL A . D 4 MG 1 205 205 MG MG A . E 5 SO4 1 202 202 SO4 SO4 A . F 5 SO4 1 203 203 SO4 SO4 A . G 6 GCP 1 200 200 GCP GCP A . H 5 SO4 1 201 201 SO4 SO4 B . I 7 HOH 1 206 1 HOH HOH A . I 7 HOH 2 207 2 HOH HOH A . I 7 HOH 3 208 3 HOH HOH A . I 7 HOH 4 209 4 HOH HOH A . I 7 HOH 5 210 7 HOH HOH A . I 7 HOH 6 211 8 HOH HOH A . I 7 HOH 7 212 9 HOH HOH A . I 7 HOH 8 213 14 HOH HOH A . I 7 HOH 9 214 16 HOH HOH A . I 7 HOH 10 215 17 HOH HOH A . I 7 HOH 11 216 18 HOH HOH A . I 7 HOH 12 217 19 HOH HOH A . I 7 HOH 13 218 20 HOH HOH A . I 7 HOH 14 219 23 HOH HOH A . I 7 HOH 15 220 24 HOH HOH A . I 7 HOH 16 221 25 HOH HOH A . I 7 HOH 17 222 26 HOH HOH A . I 7 HOH 18 223 27 HOH HOH A . I 7 HOH 19 224 28 HOH HOH A . I 7 HOH 20 225 29 HOH HOH A . I 7 HOH 21 226 30 HOH HOH A . I 7 HOH 22 227 33 HOH HOH A . I 7 HOH 23 228 34 HOH HOH A . I 7 HOH 24 229 35 HOH HOH A . I 7 HOH 25 230 36 HOH HOH A . I 7 HOH 26 231 38 HOH HOH A . I 7 HOH 27 232 39 HOH HOH A . I 7 HOH 28 233 44 HOH HOH A . I 7 HOH 29 234 45 HOH HOH A . I 7 HOH 30 235 46 HOH HOH A . I 7 HOH 31 236 48 HOH HOH A . J 7 HOH 1 202 5 HOH HOH B . J 7 HOH 2 203 10 HOH HOH B . J 7 HOH 3 204 11 HOH HOH B . J 7 HOH 4 205 12 HOH HOH B . J 7 HOH 5 206 15 HOH HOH B . J 7 HOH 6 207 21 HOH HOH B . J 7 HOH 7 208 22 HOH HOH B . J 7 HOH 8 209 31 HOH HOH B . J 7 HOH 9 210 32 HOH HOH B . J 7 HOH 10 211 37 HOH HOH B . J 7 HOH 11 212 40 HOH HOH B . J 7 HOH 12 213 41 HOH HOH B . J 7 HOH 13 214 47 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA tetrameric 4 4 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 A,B,C,D,E,F,G,H,I,J 3 1,3 A,B,C,D,E,F,G,H,I,J 4 1,4 A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3640 ? 1 MORE -69 ? 1 'SSA (A^2)' 10740 ? 2 'ABSA (A^2)' 8820 ? 2 MORE -183 ? 2 'SSA (A^2)' 19930 ? 3 'ABSA (A^2)' 9490 ? 3 MORE -168 ? 3 'SSA (A^2)' 19270 ? 4 'ABSA (A^2)' 9840 ? 4 MORE -152 ? 4 'SSA (A^2)' 18910 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_554 -x,-x+y,-z-2/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -30.6453333333 3 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5000000000 0.8660254038 0.0000000000 81.1830000000 0.8660254038 -0.5000000000 0.0000000000 -140.6130807109 0.0000000000 0.0000000000 -1.0000000000 -7.6613333333 4 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -22.9840000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id SO4 _pdbx_struct_special_symmetry.auth_seq_id 201 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id SO4 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 18 ? A THR 17 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 OG1 ? A THR 36 ? A THR 35 ? 1_555 92.7 ? 2 OG1 ? A THR 18 ? A THR 17 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O1G ? G GCP . ? A GCP 200 ? 1_555 173.7 ? 3 OG1 ? A THR 36 ? A THR 35 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O1G ? G GCP . ? A GCP 200 ? 1_555 87.5 ? 4 OG1 ? A THR 18 ? A THR 17 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O2B ? G GCP . ? A GCP 200 ? 1_555 95.7 ? 5 OG1 ? A THR 36 ? A THR 35 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O2B ? G GCP . ? A GCP 200 ? 1_555 169.3 ? 6 O1G ? G GCP . ? A GCP 200 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O2B ? G GCP . ? A GCP 200 ? 1_555 83.5 ? 7 OG1 ? A THR 18 ? A THR 17 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 92.2 ? 8 OG1 ? A THR 36 ? A THR 35 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 99.7 ? 9 O1G ? G GCP . ? A GCP 200 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 94.0 ? 10 O2B ? G GCP . ? A GCP 200 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 86.7 ? 11 OG1 ? A THR 18 ? A THR 17 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 98.2 ? 12 OG1 ? A THR 36 ? A THR 35 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 84.3 ? 13 O1G ? G GCP . ? A GCP 200 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 75.6 ? 14 O2B ? G GCP . ? A GCP 200 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 87.9 ? 15 O ? I HOH . ? A HOH 207 ? 1_555 MG ? D MG . ? A MG 205 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 168.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-30 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.value' 17 5 'Structure model' '_struct_conn.pdbx_dist_value' 18 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 13.9842 -63.2942 -3.8227 -0.0814 -0.2307 0.1389 -0.0754 0.1025 -0.0833 3.9800 3.4947 2.1067 1.0548 0.2636 -0.0477 0.1415 -0.2729 1.0078 0.5026 -0.1487 0.4553 -0.1994 0.0092 0.0072 'X-RAY DIFFRACTION' 2 ? refined 14.0796 -77.4512 -15.8260 -0.0889 -0.0786 -0.2088 -0.0350 -0.0129 -0.0153 7.8740 2.1767 0.2272 1.7819 -0.8382 -0.6844 0.0696 0.4965 -0.5417 -0.0323 -0.0084 -0.4911 0.1299 0.2255 -0.0612 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 2 A 3 A 178 A 179 ? 'X-RAY DIFFRACTION' ? 2 2 B 11 B 1 B 45 B 35 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MAR345 'data collection' . ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 PHASER phasing . ? 5 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;sequence The sequence of human CDC42 isoform 1 is not available in uniprot database at the time of processing. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 11 ? ? -45.56 154.23 2 1 ALA A 13 ? ? 56.34 4.67 3 1 VAL A 36 ? ? -97.05 -62.83 4 1 LYS A 150 ? ? -154.78 74.06 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 27 ? CE ? A LYS 28 CE 2 1 Y 1 A LYS 27 ? NZ ? A LYS 28 NZ 3 1 Y 1 A GLU 31 ? OE1 ? A GLU 32 OE1 4 1 Y 1 A GLU 31 ? OE2 ? A GLU 32 OE2 5 1 Y 1 A GLU 91 ? CD ? A GLU 92 CD 6 1 Y 1 A GLU 91 ? OE1 ? A GLU 92 OE1 7 1 Y 1 A GLU 91 ? OE2 ? A GLU 92 OE2 8 1 Y 1 A LYS 107 ? CD ? A LYS 108 CD 9 1 Y 1 A LYS 107 ? CE ? A LYS 108 CE 10 1 Y 1 A LYS 107 ? NZ ? A LYS 108 NZ 11 1 Y 1 A ILE 126 ? CG1 ? A ILE 127 CG1 12 1 Y 1 A ILE 126 ? CG2 ? A ILE 127 CG2 13 1 Y 1 A ILE 126 ? CD1 ? A ILE 127 CD1 14 1 Y 1 A LYS 131 ? CD ? A LYS 132 CD 15 1 Y 1 A LYS 131 ? CE ? A LYS 132 CE 16 1 Y 1 A LYS 131 ? NZ ? A LYS 132 NZ 17 1 Y 1 A LYS 133 ? CG ? A LYS 134 CG 18 1 Y 1 A LYS 133 ? CD ? A LYS 134 CD 19 1 Y 1 A LYS 133 ? CE ? A LYS 134 CE 20 1 Y 1 A LYS 133 ? NZ ? A LYS 134 NZ 21 1 Y 1 A LYS 135 ? NZ ? A LYS 136 NZ 22 1 Y 1 A GLU 140 ? CG ? A GLU 141 CG 23 1 Y 1 A GLU 140 ? CD ? A GLU 141 CD 24 1 Y 1 A GLU 140 ? OE1 ? A GLU 141 OE1 25 1 Y 1 A GLU 140 ? OE2 ? A GLU 141 OE2 26 1 Y 1 A LYS 144 ? NZ ? A LYS 145 NZ 27 1 Y 1 A ARG 147 ? CG ? A ARG 148 CG 28 1 Y 1 A ARG 147 ? CD ? A ARG 148 CD 29 1 Y 1 A ARG 147 ? NE ? A ARG 148 NE 30 1 Y 1 A ARG 147 ? CZ ? A ARG 148 CZ 31 1 Y 1 A ARG 147 ? NH1 ? A ARG 148 NH1 32 1 Y 1 A ARG 147 ? NH2 ? A ARG 148 NH2 33 1 Y 1 A LYS 150 ? CE ? A LYS 151 CE 34 1 Y 1 A LYS 150 ? NZ ? A LYS 151 NZ 35 1 Y 1 B GLU 11 ? CG ? B GLU 1 CG 36 1 Y 1 B GLU 11 ? CD ? B GLU 1 CD 37 1 Y 1 B GLU 11 ? OE1 ? B GLU 1 OE1 38 1 Y 1 B GLU 11 ? OE2 ? B GLU 1 OE2 39 1 Y 1 B GLN 19 ? CD ? B GLN 9 CD 40 1 Y 1 B GLN 19 ? OE1 ? B GLN 9 OE1 41 1 Y 1 B GLN 19 ? NE2 ? B GLN 9 NE2 42 1 Y 1 B LYS 29 ? CE ? B LYS 19 CE 43 1 Y 1 B LYS 29 ? NZ ? B LYS 19 NZ 44 1 Y 1 B LYS 32 ? NZ ? B LYS 22 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 0 ? A SER 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A PRO 179 ? A PRO 180 4 1 Y 1 A PRO 180 ? A PRO 181 5 1 Y 1 A GLU 181 ? A GLU 182 6 1 Y 1 A PRO 182 ? A PRO 183 7 1 Y 1 A LYS 183 ? A LYS 184 8 1 Y 1 A LYS 184 ? A LYS 185 9 1 Y 1 A SER 185 ? A SER 186 10 1 Y 1 A ARG 186 ? A ARG 187 11 1 Y 1 A ARG 187 ? A ARG 188 12 1 Y 1 A CYS 188 ? A CYS 189 13 1 Y 1 A VAL 189 ? A VAL 190 14 1 Y 1 A LEU 190 ? A LEU 191 15 1 Y 1 A LEU 191 ? A LEU 192 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GCP PG P N N 89 GCP O1G O N N 90 GCP O2G O N N 91 GCP O3G O N N 92 GCP C3B C N N 93 GCP PB P N R 94 GCP O1B O N N 95 GCP O2B O N N 96 GCP O3A O N N 97 GCP PA P N S 98 GCP O1A O N N 99 GCP O2A O N N 100 GCP "O5'" O N N 101 GCP "C5'" C N N 102 GCP "C4'" C N R 103 GCP "O4'" O N N 104 GCP "C3'" C N S 105 GCP "O3'" O N N 106 GCP "C2'" C N R 107 GCP "O2'" O N N 108 GCP "C1'" C N R 109 GCP N9 N Y N 110 GCP C8 C Y N 111 GCP N7 N Y N 112 GCP C5 C Y N 113 GCP C6 C Y N 114 GCP O6 O N N 115 GCP N1 N Y N 116 GCP C2 C Y N 117 GCP N2 N N N 118 GCP N3 N Y N 119 GCP C4 C Y N 120 GCP HOG2 H N N 121 GCP HOG3 H N N 122 GCP H3B1 H N N 123 GCP H3B2 H N N 124 GCP HOB2 H N N 125 GCP HOA2 H N N 126 GCP "H5'2" H N N 127 GCP "H5'1" H N N 128 GCP "H4'" H N N 129 GCP "H3'" H N N 130 GCP "HO3'" H N N 131 GCP "H2'" H N N 132 GCP "HO2'" H N N 133 GCP "H1'" H N N 134 GCP H8 H N N 135 GCP HN1 H N N 136 GCP HN21 H N N 137 GCP HN22 H N N 138 GLN N N N N 139 GLN CA C N S 140 GLN C C N N 141 GLN O O N N 142 GLN CB C N N 143 GLN CG C N N 144 GLN CD C N N 145 GLN OE1 O N N 146 GLN NE2 N N N 147 GLN OXT O N N 148 GLN H H N N 149 GLN H2 H N N 150 GLN HA H N N 151 GLN HB2 H N N 152 GLN HB3 H N N 153 GLN HG2 H N N 154 GLN HG3 H N N 155 GLN HE21 H N N 156 GLN HE22 H N N 157 GLN HXT H N N 158 GLU N N N N 159 GLU CA C N S 160 GLU C C N N 161 GLU O O N N 162 GLU CB C N N 163 GLU CG C N N 164 GLU CD C N N 165 GLU OE1 O N N 166 GLU OE2 O N N 167 GLU OXT O N N 168 GLU H H N N 169 GLU H2 H N N 170 GLU HA H N N 171 GLU HB2 H N N 172 GLU HB3 H N N 173 GLU HG2 H N N 174 GLU HG3 H N N 175 GLU HE2 H N N 176 GLU HXT H N N 177 GLY N N N N 178 GLY CA C N N 179 GLY C C N N 180 GLY O O N N 181 GLY OXT O N N 182 GLY H H N N 183 GLY H2 H N N 184 GLY HA2 H N N 185 GLY HA3 H N N 186 GLY HXT H N N 187 HIS N N N N 188 HIS CA C N S 189 HIS C C N N 190 HIS O O N N 191 HIS CB C N N 192 HIS CG C Y N 193 HIS ND1 N Y N 194 HIS CD2 C Y N 195 HIS CE1 C Y N 196 HIS NE2 N Y N 197 HIS OXT O N N 198 HIS H H N N 199 HIS H2 H N N 200 HIS HA H N N 201 HIS HB2 H N N 202 HIS HB3 H N N 203 HIS HD1 H N N 204 HIS HD2 H N N 205 HIS HE1 H N N 206 HIS HE2 H N N 207 HIS HXT H N N 208 HOH O O N N 209 HOH H1 H N N 210 HOH H2 H N N 211 ILE N N N N 212 ILE CA C N S 213 ILE C C N N 214 ILE O O N N 215 ILE CB C N S 216 ILE CG1 C N N 217 ILE CG2 C N N 218 ILE CD1 C N N 219 ILE OXT O N N 220 ILE H H N N 221 ILE H2 H N N 222 ILE HA H N N 223 ILE HB H N N 224 ILE HG12 H N N 225 ILE HG13 H N N 226 ILE HG21 H N N 227 ILE HG22 H N N 228 ILE HG23 H N N 229 ILE HD11 H N N 230 ILE HD12 H N N 231 ILE HD13 H N N 232 ILE HXT H N N 233 LEU N N N N 234 LEU CA C N S 235 LEU C C N N 236 LEU O O N N 237 LEU CB C N N 238 LEU CG C N N 239 LEU CD1 C N N 240 LEU CD2 C N N 241 LEU OXT O N N 242 LEU H H N N 243 LEU H2 H N N 244 LEU HA H N N 245 LEU HB2 H N N 246 LEU HB3 H N N 247 LEU HG H N N 248 LEU HD11 H N N 249 LEU HD12 H N N 250 LEU HD13 H N N 251 LEU HD21 H N N 252 LEU HD22 H N N 253 LEU HD23 H N N 254 LEU HXT H N N 255 LYS N N N N 256 LYS CA C N S 257 LYS C C N N 258 LYS O O N N 259 LYS CB C N N 260 LYS CG C N N 261 LYS CD C N N 262 LYS CE C N N 263 LYS NZ N N N 264 LYS OXT O N N 265 LYS H H N N 266 LYS H2 H N N 267 LYS HA H N N 268 LYS HB2 H N N 269 LYS HB3 H N N 270 LYS HG2 H N N 271 LYS HG3 H N N 272 LYS HD2 H N N 273 LYS HD3 H N N 274 LYS HE2 H N N 275 LYS HE3 H N N 276 LYS HZ1 H N N 277 LYS HZ2 H N N 278 LYS HZ3 H N N 279 LYS HXT H N N 280 MET N N N N 281 MET CA C N S 282 MET C C N N 283 MET O O N N 284 MET CB C N N 285 MET CG C N N 286 MET SD S N N 287 MET CE C N N 288 MET OXT O N N 289 MET H H N N 290 MET H2 H N N 291 MET HA H N N 292 MET HB2 H N N 293 MET HB3 H N N 294 MET HG2 H N N 295 MET HG3 H N N 296 MET HE1 H N N 297 MET HE2 H N N 298 MET HE3 H N N 299 MET HXT H N N 300 MG MG MG N N 301 PHE N N N N 302 PHE CA C N S 303 PHE C C N N 304 PHE O O N N 305 PHE CB C N N 306 PHE CG C Y N 307 PHE CD1 C Y N 308 PHE CD2 C Y N 309 PHE CE1 C Y N 310 PHE CE2 C Y N 311 PHE CZ C Y N 312 PHE OXT O N N 313 PHE H H N N 314 PHE H2 H N N 315 PHE HA H N N 316 PHE HB2 H N N 317 PHE HB3 H N N 318 PHE HD1 H N N 319 PHE HD2 H N N 320 PHE HE1 H N N 321 PHE HE2 H N N 322 PHE HZ H N N 323 PHE HXT H N N 324 PRO N N N N 325 PRO CA C N S 326 PRO C C N N 327 PRO O O N N 328 PRO CB C N N 329 PRO CG C N N 330 PRO CD C N N 331 PRO OXT O N N 332 PRO H H N N 333 PRO HA H N N 334 PRO HB2 H N N 335 PRO HB3 H N N 336 PRO HG2 H N N 337 PRO HG3 H N N 338 PRO HD2 H N N 339 PRO HD3 H N N 340 PRO HXT H N N 341 SER N N N N 342 SER CA C N S 343 SER C C N N 344 SER O O N N 345 SER CB C N N 346 SER OG O N N 347 SER OXT O N N 348 SER H H N N 349 SER H2 H N N 350 SER HA H N N 351 SER HB2 H N N 352 SER HB3 H N N 353 SER HG H N N 354 SER HXT H N N 355 SO4 S S N N 356 SO4 O1 O N N 357 SO4 O2 O N N 358 SO4 O3 O N N 359 SO4 O4 O N N 360 THR N N N N 361 THR CA C N S 362 THR C C N N 363 THR O O N N 364 THR CB C N R 365 THR OG1 O N N 366 THR CG2 C N N 367 THR OXT O N N 368 THR H H N N 369 THR H2 H N N 370 THR HA H N N 371 THR HB H N N 372 THR HG1 H N N 373 THR HG21 H N N 374 THR HG22 H N N 375 THR HG23 H N N 376 THR HXT H N N 377 TRP N N N N 378 TRP CA C N S 379 TRP C C N N 380 TRP O O N N 381 TRP CB C N N 382 TRP CG C Y N 383 TRP CD1 C Y N 384 TRP CD2 C Y N 385 TRP NE1 N Y N 386 TRP CE2 C Y N 387 TRP CE3 C Y N 388 TRP CZ2 C Y N 389 TRP CZ3 C Y N 390 TRP CH2 C Y N 391 TRP OXT O N N 392 TRP H H N N 393 TRP H2 H N N 394 TRP HA H N N 395 TRP HB2 H N N 396 TRP HB3 H N N 397 TRP HD1 H N N 398 TRP HE1 H N N 399 TRP HE3 H N N 400 TRP HZ2 H N N 401 TRP HZ3 H N N 402 TRP HH2 H N N 403 TRP HXT H N N 404 TYR N N N N 405 TYR CA C N S 406 TYR C C N N 407 TYR O O N N 408 TYR CB C N N 409 TYR CG C Y N 410 TYR CD1 C Y N 411 TYR CD2 C Y N 412 TYR CE1 C Y N 413 TYR CE2 C Y N 414 TYR CZ C Y N 415 TYR OH O N N 416 TYR OXT O N N 417 TYR H H N N 418 TYR H2 H N N 419 TYR HA H N N 420 TYR HB2 H N N 421 TYR HB3 H N N 422 TYR HD1 H N N 423 TYR HD2 H N N 424 TYR HE1 H N N 425 TYR HE2 H N N 426 TYR HH H N N 427 TYR HXT H N N 428 VAL N N N N 429 VAL CA C N S 430 VAL C C N N 431 VAL O O N N 432 VAL CB C N N 433 VAL CG1 C N N 434 VAL CG2 C N N 435 VAL OXT O N N 436 VAL H H N N 437 VAL H2 H N N 438 VAL HA H N N 439 VAL HB H N N 440 VAL HG11 H N N 441 VAL HG12 H N N 442 VAL HG13 H N N 443 VAL HG21 H N N 444 VAL HG22 H N N 445 VAL HG23 H N N 446 VAL HXT H N N 447 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GCP PG O1G doub N N 83 GCP PG O2G sing N N 84 GCP PG O3G sing N N 85 GCP PG C3B sing N N 86 GCP O2G HOG2 sing N N 87 GCP O3G HOG3 sing N N 88 GCP C3B PB sing N N 89 GCP C3B H3B1 sing N N 90 GCP C3B H3B2 sing N N 91 GCP PB O1B doub N N 92 GCP PB O2B sing N N 93 GCP PB O3A sing N N 94 GCP O2B HOB2 sing N N 95 GCP O3A PA sing N N 96 GCP PA O1A doub N N 97 GCP PA O2A sing N N 98 GCP PA "O5'" sing N N 99 GCP O2A HOA2 sing N N 100 GCP "O5'" "C5'" sing N N 101 GCP "C5'" "C4'" sing N N 102 GCP "C5'" "H5'2" sing N N 103 GCP "C5'" "H5'1" sing N N 104 GCP "C4'" "O4'" sing N N 105 GCP "C4'" "C3'" sing N N 106 GCP "C4'" "H4'" sing N N 107 GCP "O4'" "C1'" sing N N 108 GCP "C3'" "O3'" sing N N 109 GCP "C3'" "C2'" sing N N 110 GCP "C3'" "H3'" sing N N 111 GCP "O3'" "HO3'" sing N N 112 GCP "C2'" "O2'" sing N N 113 GCP "C2'" "C1'" sing N N 114 GCP "C2'" "H2'" sing N N 115 GCP "O2'" "HO2'" sing N N 116 GCP "C1'" N9 sing N N 117 GCP "C1'" "H1'" sing N N 118 GCP N9 C8 sing Y N 119 GCP N9 C4 sing Y N 120 GCP C8 N7 doub Y N 121 GCP C8 H8 sing N N 122 GCP N7 C5 sing Y N 123 GCP C5 C6 sing Y N 124 GCP C5 C4 doub Y N 125 GCP C6 O6 doub N N 126 GCP C6 N1 sing Y N 127 GCP N1 C2 sing Y N 128 GCP N1 HN1 sing N N 129 GCP C2 N2 sing N N 130 GCP C2 N3 doub Y N 131 GCP N2 HN21 sing N N 132 GCP N2 HN22 sing N N 133 GCP N3 C4 sing Y N 134 GLN N CA sing N N 135 GLN N H sing N N 136 GLN N H2 sing N N 137 GLN CA C sing N N 138 GLN CA CB sing N N 139 GLN CA HA sing N N 140 GLN C O doub N N 141 GLN C OXT sing N N 142 GLN CB CG sing N N 143 GLN CB HB2 sing N N 144 GLN CB HB3 sing N N 145 GLN CG CD sing N N 146 GLN CG HG2 sing N N 147 GLN CG HG3 sing N N 148 GLN CD OE1 doub N N 149 GLN CD NE2 sing N N 150 GLN NE2 HE21 sing N N 151 GLN NE2 HE22 sing N N 152 GLN OXT HXT sing N N 153 GLU N CA sing N N 154 GLU N H sing N N 155 GLU N H2 sing N N 156 GLU CA C sing N N 157 GLU CA CB sing N N 158 GLU CA HA sing N N 159 GLU C O doub N N 160 GLU C OXT sing N N 161 GLU CB CG sing N N 162 GLU CB HB2 sing N N 163 GLU CB HB3 sing N N 164 GLU CG CD sing N N 165 GLU CG HG2 sing N N 166 GLU CG HG3 sing N N 167 GLU CD OE1 doub N N 168 GLU CD OE2 sing N N 169 GLU OE2 HE2 sing N N 170 GLU OXT HXT sing N N 171 GLY N CA sing N N 172 GLY N H sing N N 173 GLY N H2 sing N N 174 GLY CA C sing N N 175 GLY CA HA2 sing N N 176 GLY CA HA3 sing N N 177 GLY C O doub N N 178 GLY C OXT sing N N 179 GLY OXT HXT sing N N 180 HIS N CA sing N N 181 HIS N H sing N N 182 HIS N H2 sing N N 183 HIS CA C sing N N 184 HIS CA CB sing N N 185 HIS CA HA sing N N 186 HIS C O doub N N 187 HIS C OXT sing N N 188 HIS CB CG sing N N 189 HIS CB HB2 sing N N 190 HIS CB HB3 sing N N 191 HIS CG ND1 sing Y N 192 HIS CG CD2 doub Y N 193 HIS ND1 CE1 doub Y N 194 HIS ND1 HD1 sing N N 195 HIS CD2 NE2 sing Y N 196 HIS CD2 HD2 sing N N 197 HIS CE1 NE2 sing Y N 198 HIS CE1 HE1 sing N N 199 HIS NE2 HE2 sing N N 200 HIS OXT HXT sing N N 201 HOH O H1 sing N N 202 HOH O H2 sing N N 203 ILE N CA sing N N 204 ILE N H sing N N 205 ILE N H2 sing N N 206 ILE CA C sing N N 207 ILE CA CB sing N N 208 ILE CA HA sing N N 209 ILE C O doub N N 210 ILE C OXT sing N N 211 ILE CB CG1 sing N N 212 ILE CB CG2 sing N N 213 ILE CB HB sing N N 214 ILE CG1 CD1 sing N N 215 ILE CG1 HG12 sing N N 216 ILE CG1 HG13 sing N N 217 ILE CG2 HG21 sing N N 218 ILE CG2 HG22 sing N N 219 ILE CG2 HG23 sing N N 220 ILE CD1 HD11 sing N N 221 ILE CD1 HD12 sing N N 222 ILE CD1 HD13 sing N N 223 ILE OXT HXT sing N N 224 LEU N CA sing N N 225 LEU N H sing N N 226 LEU N H2 sing N N 227 LEU CA C sing N N 228 LEU CA CB sing N N 229 LEU CA HA sing N N 230 LEU C O doub N N 231 LEU C OXT sing N N 232 LEU CB CG sing N N 233 LEU CB HB2 sing N N 234 LEU CB HB3 sing N N 235 LEU CG CD1 sing N N 236 LEU CG CD2 sing N N 237 LEU CG HG sing N N 238 LEU CD1 HD11 sing N N 239 LEU CD1 HD12 sing N N 240 LEU CD1 HD13 sing N N 241 LEU CD2 HD21 sing N N 242 LEU CD2 HD22 sing N N 243 LEU CD2 HD23 sing N N 244 LEU OXT HXT sing N N 245 LYS N CA sing N N 246 LYS N H sing N N 247 LYS N H2 sing N N 248 LYS CA C sing N N 249 LYS CA CB sing N N 250 LYS CA HA sing N N 251 LYS C O doub N N 252 LYS C OXT sing N N 253 LYS CB CG sing N N 254 LYS CB HB2 sing N N 255 LYS CB HB3 sing N N 256 LYS CG CD sing N N 257 LYS CG HG2 sing N N 258 LYS CG HG3 sing N N 259 LYS CD CE sing N N 260 LYS CD HD2 sing N N 261 LYS CD HD3 sing N N 262 LYS CE NZ sing N N 263 LYS CE HE2 sing N N 264 LYS CE HE3 sing N N 265 LYS NZ HZ1 sing N N 266 LYS NZ HZ2 sing N N 267 LYS NZ HZ3 sing N N 268 LYS OXT HXT sing N N 269 MET N CA sing N N 270 MET N H sing N N 271 MET N H2 sing N N 272 MET CA C sing N N 273 MET CA CB sing N N 274 MET CA HA sing N N 275 MET C O doub N N 276 MET C OXT sing N N 277 MET CB CG sing N N 278 MET CB HB2 sing N N 279 MET CB HB3 sing N N 280 MET CG SD sing N N 281 MET CG HG2 sing N N 282 MET CG HG3 sing N N 283 MET SD CE sing N N 284 MET CE HE1 sing N N 285 MET CE HE2 sing N N 286 MET CE HE3 sing N N 287 MET OXT HXT sing N N 288 PHE N CA sing N N 289 PHE N H sing N N 290 PHE N H2 sing N N 291 PHE CA C sing N N 292 PHE CA CB sing N N 293 PHE CA HA sing N N 294 PHE C O doub N N 295 PHE C OXT sing N N 296 PHE CB CG sing N N 297 PHE CB HB2 sing N N 298 PHE CB HB3 sing N N 299 PHE CG CD1 doub Y N 300 PHE CG CD2 sing Y N 301 PHE CD1 CE1 sing Y N 302 PHE CD1 HD1 sing N N 303 PHE CD2 CE2 doub Y N 304 PHE CD2 HD2 sing N N 305 PHE CE1 CZ doub Y N 306 PHE CE1 HE1 sing N N 307 PHE CE2 CZ sing Y N 308 PHE CE2 HE2 sing N N 309 PHE CZ HZ sing N N 310 PHE OXT HXT sing N N 311 PRO N CA sing N N 312 PRO N CD sing N N 313 PRO N H sing N N 314 PRO CA C sing N N 315 PRO CA CB sing N N 316 PRO CA HA sing N N 317 PRO C O doub N N 318 PRO C OXT sing N N 319 PRO CB CG sing N N 320 PRO CB HB2 sing N N 321 PRO CB HB3 sing N N 322 PRO CG CD sing N N 323 PRO CG HG2 sing N N 324 PRO CG HG3 sing N N 325 PRO CD HD2 sing N N 326 PRO CD HD3 sing N N 327 PRO OXT HXT sing N N 328 SER N CA sing N N 329 SER N H sing N N 330 SER N H2 sing N N 331 SER CA C sing N N 332 SER CA CB sing N N 333 SER CA HA sing N N 334 SER C O doub N N 335 SER C OXT sing N N 336 SER CB OG sing N N 337 SER CB HB2 sing N N 338 SER CB HB3 sing N N 339 SER OG HG sing N N 340 SER OXT HXT sing N N 341 SO4 S O1 doub N N 342 SO4 S O2 doub N N 343 SO4 S O3 sing N N 344 SO4 S O4 sing N N 345 THR N CA sing N N 346 THR N H sing N N 347 THR N H2 sing N N 348 THR CA C sing N N 349 THR CA CB sing N N 350 THR CA HA sing N N 351 THR C O doub N N 352 THR C OXT sing N N 353 THR CB OG1 sing N N 354 THR CB CG2 sing N N 355 THR CB HB sing N N 356 THR OG1 HG1 sing N N 357 THR CG2 HG21 sing N N 358 THR CG2 HG22 sing N N 359 THR CG2 HG23 sing N N 360 THR OXT HXT sing N N 361 TRP N CA sing N N 362 TRP N H sing N N 363 TRP N H2 sing N N 364 TRP CA C sing N N 365 TRP CA CB sing N N 366 TRP CA HA sing N N 367 TRP C O doub N N 368 TRP C OXT sing N N 369 TRP CB CG sing N N 370 TRP CB HB2 sing N N 371 TRP CB HB3 sing N N 372 TRP CG CD1 doub Y N 373 TRP CG CD2 sing Y N 374 TRP CD1 NE1 sing Y N 375 TRP CD1 HD1 sing N N 376 TRP CD2 CE2 doub Y N 377 TRP CD2 CE3 sing Y N 378 TRP NE1 CE2 sing Y N 379 TRP NE1 HE1 sing N N 380 TRP CE2 CZ2 sing Y N 381 TRP CE3 CZ3 doub Y N 382 TRP CE3 HE3 sing N N 383 TRP CZ2 CH2 doub Y N 384 TRP CZ2 HZ2 sing N N 385 TRP CZ3 CH2 sing Y N 386 TRP CZ3 HZ3 sing N N 387 TRP CH2 HH2 sing N N 388 TRP OXT HXT sing N N 389 TYR N CA sing N N 390 TYR N H sing N N 391 TYR N H2 sing N N 392 TYR CA C sing N N 393 TYR CA CB sing N N 394 TYR CA HA sing N N 395 TYR C O doub N N 396 TYR C OXT sing N N 397 TYR CB CG sing N N 398 TYR CB HB2 sing N N 399 TYR CB HB3 sing N N 400 TYR CG CD1 doub Y N 401 TYR CG CD2 sing Y N 402 TYR CD1 CE1 sing Y N 403 TYR CD1 HD1 sing N N 404 TYR CD2 CE2 doub Y N 405 TYR CD2 HD2 sing N N 406 TYR CE1 CZ doub Y N 407 TYR CE1 HE1 sing N N 408 TYR CE2 CZ sing Y N 409 TYR CE2 HE2 sing N N 410 TYR CZ OH sing N N 411 TYR OH HH sing N N 412 TYR OXT HXT sing N N 413 VAL N CA sing N N 414 VAL N H sing N N 415 VAL N H2 sing N N 416 VAL CA C sing N N 417 VAL CA CB sing N N 418 VAL CA HA sing N N 419 VAL C O doub N N 420 VAL C OXT sing N N 421 VAL CB CG1 sing N N 422 VAL CB CG2 sing N N 423 VAL CB HB sing N N 424 VAL CG1 HG11 sing N N 425 VAL CG1 HG12 sing N N 426 VAL CG1 HG13 sing N N 427 VAL CG2 HG21 sing N N 428 VAL CG2 HG22 sing N N 429 VAL CG2 HG23 sing N N 430 VAL OXT HXT sing N N 431 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 'MAGNESIUM ION' MG 5 'SULFATE ION' SO4 6 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' GCP 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GRN _pdbx_initial_refinement_model.details 'pdb entry 1GRN' #