HEADER MEMBRANE PROTEIN 22-DEC-06 2ODJ TITLE CRYSTAL STRUCTURE OF THE OUTER MEMBRANE PROTEIN OPRD FROM PSEUDOMONAS TITLE 2 AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PORIN D; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OUTER MEMBRANE PROTEIN D2, IMIPENEM/BASIC AMINO ACID- COMPND 5 SPECIFIC OUTER MEMBRANE PORE; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: OPRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PB22 KEYWDS OUTER MEMBRANE PROTEIN, BETA-BARREL, AMINO ACID TRANSPORT, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BISWAS,B.VAN DEN BERG REVDAT 5 27-DEC-23 2ODJ 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2ODJ 1 VERSN REVDAT 3 24-FEB-09 2ODJ 1 VERSN REVDAT 2 06-MAY-08 2ODJ 1 JRNL REVDAT 1 16-OCT-07 2ODJ 0 JRNL AUTH S.BISWAS,M.M.MOHAMMAD,D.R.PATEL,L.MOVILEANU,B.VAN DEN BERG JRNL TITL STRUCTURAL INSIGHT INTO OPRD SUBSTRATE SPECIFICITY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 1108 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17952093 JRNL DOI 10.1038/NSMB1304 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1520 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 174 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 168 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.64 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ODJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 OPTICS : PLATINUM COATED MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22385 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LISO4, 0.1 M NACL, 0.1 M NA REMARK 280 CITRATE, 28-32% PEG 400 (PH 3.5), PH 4.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.68500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.76250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.68500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.76250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 GLY A 37 REMARK 465 ASP A 38 REMARK 465 SER A 77 REMARK 465 ASP A 78 REMARK 465 LYS A 79 REMARK 465 THR A 80 REMARK 465 GLY A 81 REMARK 465 THR A 82 REMARK 465 GLY A 83 REMARK 465 ASN A 84 REMARK 465 LEU A 85 REMARK 465 PRO A 86 REMARK 465 VAL A 87 REMARK 465 MSE A 88 REMARK 465 ASN A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 LYS A 92 REMARK 465 PRO A 93 REMARK 465 ARG A 94 REMARK 465 ASP A 95 REMARK 465 GLY A 160 REMARK 465 LYS A 161 REMARK 465 GLU A 162 REMARK 465 PRO A 163 REMARK 465 THR A 164 REMARK 465 THR A 165 REMARK 465 VAL A 166 REMARK 465 LYS A 167 REMARK 465 SER A 168 REMARK 465 ARG A 169 REMARK 465 GLY A 170 REMARK 465 ARG A 287 REMARK 465 ASN A 288 REMARK 465 GLY A 289 REMARK 465 SER A 290 REMARK 465 GLY A 291 REMARK 465 ALA A 292 REMARK 465 GLY A 293 REMARK 465 GLY A 294 REMARK 465 ASP A 295 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 SER B 34 REMARK 465 GLY B 35 REMARK 465 SER B 36 REMARK 465 GLY B 37 REMARK 465 SER B 77 REMARK 465 ASP B 78 REMARK 465 LYS B 79 REMARK 465 THR B 80 REMARK 465 GLY B 81 REMARK 465 THR B 82 REMARK 465 GLY B 83 REMARK 465 ASN B 84 REMARK 465 LEU B 85 REMARK 465 PRO B 86 REMARK 465 VAL B 87 REMARK 465 MSE B 88 REMARK 465 ASN B 89 REMARK 465 ASP B 90 REMARK 465 GLY B 91 REMARK 465 LYS B 92 REMARK 465 PRO B 93 REMARK 465 ARG B 94 REMARK 465 ASP B 95 REMARK 465 GLY B 160 REMARK 465 LYS B 161 REMARK 465 GLU B 162 REMARK 465 PRO B 163 REMARK 465 THR B 164 REMARK 465 THR B 165 REMARK 465 VAL B 166 REMARK 465 LYS B 167 REMARK 465 SER B 168 REMARK 465 ARG B 169 REMARK 465 GLY B 170 REMARK 465 GLU B 241 REMARK 465 ASN B 288 REMARK 465 GLY B 289 REMARK 465 SER B 290 REMARK 465 GLY B 291 REMARK 465 ALA B 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 426 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 421 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 422 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 423 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 424 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 426 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 427 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 428 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 16 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 GLY A 242 N - CA - C ANGL. DEV. = 15.3 DEGREES REMARK 500 TYR A 327 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 PRO A 330 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 LEU B 386 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 -18.95 -151.28 REMARK 500 ASP A 16 3.60 140.58 REMARK 500 ASP A 41 79.85 -151.18 REMARK 500 ASP A 74 148.74 161.14 REMARK 500 SER A 109 -120.75 71.34 REMARK 500 SER A 130 117.49 -172.28 REMARK 500 ARG A 131 -159.10 -178.40 REMARK 500 LEU A 132 -60.71 -91.97 REMARK 500 PRO A 134 170.68 -54.80 REMARK 500 GLN A 141 96.42 174.81 REMARK 500 SER A 145 27.92 -168.83 REMARK 500 GLU A 148 -79.97 -31.97 REMARK 500 THR A 175 -33.69 -37.04 REMARK 500 SER A 183 139.14 173.15 REMARK 500 TYR A 191 110.84 -164.72 REMARK 500 ASP A 195 1.84 -64.29 REMARK 500 GLU A 205 77.44 -165.46 REMARK 500 GLU A 207 138.34 -29.89 REMARK 500 ASP A 208 29.31 41.22 REMARK 500 ILE A 209 -52.28 -136.53 REMARK 500 LYS A 243 -20.85 -146.29 REMARK 500 ASP A 263 110.16 8.75 REMARK 500 ALA A 264 -20.34 92.79 REMARK 500 PHE A 285 86.72 -152.42 REMARK 500 VAL A 303 -161.02 -125.60 REMARK 500 LEU A 324 30.19 -66.13 REMARK 500 TYR A 327 -71.51 -137.23 REMARK 500 PRO A 330 27.16 -55.78 REMARK 500 ASP A 351 -29.12 62.64 REMARK 500 ASN A 353 44.74 -82.61 REMARK 500 LYS A 357 39.42 -59.73 REMARK 500 ASN A 358 91.32 -170.59 REMARK 500 TYR A 359 -25.86 -172.71 REMARK 500 VAL A 378 61.38 -49.53 REMARK 500 GLN A 379 -41.22 -12.52 REMARK 500 ASN A 407 108.74 -165.41 REMARK 500 ILE A 419 -101.23 -95.50 REMARK 500 HIS A 421 75.16 -117.99 REMARK 500 HIS A 422 113.28 -168.32 REMARK 500 HIS A 424 71.32 -117.26 REMARK 500 HIS A 425 -0.01 -159.02 REMARK 500 ALA B 8 -14.40 -176.02 REMARK 500 ASP B 16 -2.51 136.39 REMARK 500 ARG B 39 131.62 169.38 REMARK 500 ASP B 74 163.96 169.64 REMARK 500 SER B 98 106.43 -161.25 REMARK 500 SER B 109 -122.21 49.64 REMARK 500 ALA B 122 -50.49 -149.71 REMARK 500 PRO B 123 -93.93 -53.87 REMARK 500 VAL B 124 -25.28 47.14 REMARK 500 REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 327 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E B 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E B 430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 431 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 434 DBREF 2ODJ A 3 420 UNP P32722 PORD_PSEAE 26 443 DBREF 2ODJ B 3 420 UNP P32722 PORD_PSEAE 26 443 SEQADV 2ODJ GLY A 1 UNP P32722 EXPRESSION TAG SEQADV 2ODJ MSE A 2 UNP P32722 EXPRESSION TAG SEQADV 2ODJ MSE A 88 UNP P32722 MET 111 MODIFIED RESIDUE SEQADV 2ODJ MSE A 112 UNP P32722 MET 135 MODIFIED RESIDUE SEQADV 2ODJ MSE A 118 UNP P32722 MET 141 MODIFIED RESIDUE SEQADV 2ODJ MSE A 335 UNP P32722 MET 358 MODIFIED RESIDUE SEQADV 2ODJ MSE A 349 UNP P32722 MET 372 MODIFIED RESIDUE SEQADV 2ODJ HIS A 421 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS A 422 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS A 423 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS A 424 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS A 425 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS A 426 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS A 427 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS A 428 UNP P32722 EXPRESSION TAG SEQADV 2ODJ GLY B 1 UNP P32722 EXPRESSION TAG SEQADV 2ODJ MSE B 2 UNP P32722 EXPRESSION TAG SEQADV 2ODJ MSE B 88 UNP P32722 MET 111 MODIFIED RESIDUE SEQADV 2ODJ MSE B 112 UNP P32722 MET 135 MODIFIED RESIDUE SEQADV 2ODJ MSE B 118 UNP P32722 MET 141 MODIFIED RESIDUE SEQADV 2ODJ MSE B 335 UNP P32722 MET 358 MODIFIED RESIDUE SEQADV 2ODJ MSE B 349 UNP P32722 MET 372 MODIFIED RESIDUE SEQADV 2ODJ HIS B 421 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS B 422 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS B 423 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS B 424 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS B 425 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS B 426 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS B 427 UNP P32722 EXPRESSION TAG SEQADV 2ODJ HIS B 428 UNP P32722 EXPRESSION TAG SEQRES 1 A 428 GLY MSE PHE VAL SER ASP GLN ALA GLU ALA LYS GLY PHE SEQRES 2 A 428 ILE GLU ASP SER SER LEU ASP LEU LEU LEU ARG ASN TYR SEQRES 3 A 428 TYR PHE ASN ARG ASP GLY LYS SER GLY SER GLY ASP ARG SEQRES 4 A 428 VAL ASP TRP THR GLN GLY PHE LEU THR THR TYR GLU SER SEQRES 5 A 428 GLY PHE THR GLN GLY THR VAL GLY PHE GLY VAL ASP ALA SEQRES 6 A 428 PHE GLY TYR LEU GLY LEU LYS LEU ASP GLY THR SER ASP SEQRES 7 A 428 LYS THR GLY THR GLY ASN LEU PRO VAL MSE ASN ASP GLY SEQRES 8 A 428 LYS PRO ARG ASP ASP TYR SER ARG ALA GLY GLY ALA VAL SEQRES 9 A 428 LYS VAL ARG ILE SER LYS THR MSE LEU LYS TRP GLY GLU SEQRES 10 A 428 MSE GLN PRO THR ALA PRO VAL PHE ALA ALA GLY GLY SER SEQRES 11 A 428 ARG LEU PHE PRO GLN THR ALA THR GLY PHE GLN LEU GLN SEQRES 12 A 428 SER SER GLU PHE GLU GLY LEU ASP LEU GLU ALA GLY HIS SEQRES 13 A 428 PHE THR GLU GLY LYS GLU PRO THR THR VAL LYS SER ARG SEQRES 14 A 428 GLY GLU LEU TYR ALA THR TYR ALA GLY GLU THR ALA LYS SEQRES 15 A 428 SER ALA ASP PHE ILE GLY GLY ARG TYR ALA ILE THR ASP SEQRES 16 A 428 ASN LEU SER ALA SER LEU TYR GLY ALA GLU LEU GLU ASP SEQRES 17 A 428 ILE TYR ARG GLN TYR TYR LEU ASN SER ASN TYR THR ILE SEQRES 18 A 428 PRO LEU ALA SER ASP GLN SER LEU GLY PHE ASP PHE ASN SEQRES 19 A 428 ILE TYR ARG THR ASN ASP GLU GLY LYS ALA LYS ALA GLY SEQRES 20 A 428 ASP ILE SER ASN THR THR TRP SER LEU ALA ALA ALA TYR SEQRES 21 A 428 THR LEU ASP ALA HIS THR PHE THR LEU ALA TYR GLN LYS SEQRES 22 A 428 VAL HIS GLY ASP GLN PRO PHE ASP TYR ILE GLY PHE GLY SEQRES 23 A 428 ARG ASN GLY SER GLY ALA GLY GLY ASP SER ILE PHE LEU SEQRES 24 A 428 ALA ASN SER VAL GLN TYR SER ASP PHE ASN GLY PRO GLY SEQRES 25 A 428 GLU LYS SER TRP GLN ALA ARG TYR ASP LEU ASN LEU ALA SEQRES 26 A 428 SER TYR GLY VAL PRO GLY LEU THR PHE MSE VAL ARG TYR SEQRES 27 A 428 ILE ASN GLY LYS ASP ILE ASP GLY THR LYS MSE SER ASP SEQRES 28 A 428 ASN ASN VAL GLY TYR LYS ASN TYR GLY TYR GLY GLU ASP SEQRES 29 A 428 GLY LYS HIS HIS GLU THR ASN LEU GLU ALA LYS TYR VAL SEQRES 30 A 428 VAL GLN SER GLY PRO ALA LYS ASP LEU SER PHE ARG ILE SEQRES 31 A 428 ARG GLN ALA TRP HIS ARG ALA ASN ALA ASP GLN GLY GLU SEQRES 32 A 428 GLY ASP GLN ASN GLU PHE ARG LEU ILE VAL ASP TYR PRO SEQRES 33 A 428 LEU SER ILE LEU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 428 GLY MSE PHE VAL SER ASP GLN ALA GLU ALA LYS GLY PHE SEQRES 2 B 428 ILE GLU ASP SER SER LEU ASP LEU LEU LEU ARG ASN TYR SEQRES 3 B 428 TYR PHE ASN ARG ASP GLY LYS SER GLY SER GLY ASP ARG SEQRES 4 B 428 VAL ASP TRP THR GLN GLY PHE LEU THR THR TYR GLU SER SEQRES 5 B 428 GLY PHE THR GLN GLY THR VAL GLY PHE GLY VAL ASP ALA SEQRES 6 B 428 PHE GLY TYR LEU GLY LEU LYS LEU ASP GLY THR SER ASP SEQRES 7 B 428 LYS THR GLY THR GLY ASN LEU PRO VAL MSE ASN ASP GLY SEQRES 8 B 428 LYS PRO ARG ASP ASP TYR SER ARG ALA GLY GLY ALA VAL SEQRES 9 B 428 LYS VAL ARG ILE SER LYS THR MSE LEU LYS TRP GLY GLU SEQRES 10 B 428 MSE GLN PRO THR ALA PRO VAL PHE ALA ALA GLY GLY SER SEQRES 11 B 428 ARG LEU PHE PRO GLN THR ALA THR GLY PHE GLN LEU GLN SEQRES 12 B 428 SER SER GLU PHE GLU GLY LEU ASP LEU GLU ALA GLY HIS SEQRES 13 B 428 PHE THR GLU GLY LYS GLU PRO THR THR VAL LYS SER ARG SEQRES 14 B 428 GLY GLU LEU TYR ALA THR TYR ALA GLY GLU THR ALA LYS SEQRES 15 B 428 SER ALA ASP PHE ILE GLY GLY ARG TYR ALA ILE THR ASP SEQRES 16 B 428 ASN LEU SER ALA SER LEU TYR GLY ALA GLU LEU GLU ASP SEQRES 17 B 428 ILE TYR ARG GLN TYR TYR LEU ASN SER ASN TYR THR ILE SEQRES 18 B 428 PRO LEU ALA SER ASP GLN SER LEU GLY PHE ASP PHE ASN SEQRES 19 B 428 ILE TYR ARG THR ASN ASP GLU GLY LYS ALA LYS ALA GLY SEQRES 20 B 428 ASP ILE SER ASN THR THR TRP SER LEU ALA ALA ALA TYR SEQRES 21 B 428 THR LEU ASP ALA HIS THR PHE THR LEU ALA TYR GLN LYS SEQRES 22 B 428 VAL HIS GLY ASP GLN PRO PHE ASP TYR ILE GLY PHE GLY SEQRES 23 B 428 ARG ASN GLY SER GLY ALA GLY GLY ASP SER ILE PHE LEU SEQRES 24 B 428 ALA ASN SER VAL GLN TYR SER ASP PHE ASN GLY PRO GLY SEQRES 25 B 428 GLU LYS SER TRP GLN ALA ARG TYR ASP LEU ASN LEU ALA SEQRES 26 B 428 SER TYR GLY VAL PRO GLY LEU THR PHE MSE VAL ARG TYR SEQRES 27 B 428 ILE ASN GLY LYS ASP ILE ASP GLY THR LYS MSE SER ASP SEQRES 28 B 428 ASN ASN VAL GLY TYR LYS ASN TYR GLY TYR GLY GLU ASP SEQRES 29 B 428 GLY LYS HIS HIS GLU THR ASN LEU GLU ALA LYS TYR VAL SEQRES 30 B 428 VAL GLN SER GLY PRO ALA LYS ASP LEU SER PHE ARG ILE SEQRES 31 B 428 ARG GLN ALA TRP HIS ARG ALA ASN ALA ASP GLN GLY GLU SEQRES 32 B 428 GLY ASP GLN ASN GLU PHE ARG LEU ILE VAL ASP TYR PRO SEQRES 33 B 428 LEU SER ILE LEU HIS HIS HIS HIS HIS HIS HIS HIS MODRES 2ODJ MSE A 2 MET SELENOMETHIONINE MODRES 2ODJ MSE A 112 MET SELENOMETHIONINE MODRES 2ODJ MSE A 118 MET SELENOMETHIONINE MODRES 2ODJ MSE A 335 MET SELENOMETHIONINE MODRES 2ODJ MSE A 349 MET SELENOMETHIONINE MODRES 2ODJ MSE B 2 MET SELENOMETHIONINE MODRES 2ODJ MSE B 112 MET SELENOMETHIONINE MODRES 2ODJ MSE B 118 MET SELENOMETHIONINE MODRES 2ODJ MSE B 335 MET SELENOMETHIONINE MODRES 2ODJ MSE B 349 MET SELENOMETHIONINE HET MSE A 2 8 HET MSE A 112 8 HET MSE A 118 8 HET MSE A 335 8 HET MSE A 349 8 HET MSE B 2 8 HET MSE B 112 8 HET MSE B 118 8 HET MSE B 335 8 HET MSE B 349 8 HET C8E A 429 21 HET C8E A 430 21 HET C8E A 431 21 HET C8E A 432 21 HET C8E A 433 21 HET C8E A 434 21 HET C8E B 429 21 HET C8E B 430 21 HETNAM MSE SELENOMETHIONINE HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 C8E 8(C16 H34 O5) HELIX 1 1 ASN B 353 ASN B 358 1 6 HELIX 2 2 ALA B 399 GLY B 402 5 4 SHEET 1 A20 SER A 250 ASN A 251 0 SHEET 2 A20 GLN A 227 ASN A 239 -1 N THR A 238 O ASN A 251 SHEET 3 A20 TRP A 254 LEU A 262 -1 O ALA A 259 N GLY A 230 SHEET 4 A20 HIS A 265 LYS A 273 -1 O LEU A 269 N ALA A 258 SHEET 5 A20 LYS A 314 LEU A 322 -1 O GLN A 317 N ALA A 270 SHEET 6 A20 LEU A 332 ILE A 344 -1 O LYS A 342 N LYS A 314 SHEET 7 A20 GLY A 365 VAL A 377 -1 O HIS A 367 N GLY A 341 SHEET 8 A20 SER A 387 ALA A 397 -1 O TRP A 394 N THR A 370 SHEET 9 A20 ASN A 407 HIS A 421 -1 O ILE A 412 N ARG A 389 SHEET 10 A20 SER A 18 ASP A 31 -1 N LEU A 19 O ILE A 419 SHEET 11 A20 VAL A 40 GLU A 51 -1 O GLU A 51 N SER A 18 SHEET 12 A20 VAL A 59 ASP A 74 -1 O ALA A 65 N TYR A 50 SHEET 13 A20 SER A 98 ILE A 108 -1 O ARG A 99 N TYR A 68 SHEET 14 A20 THR A 111 MSE A 118 -1 O LEU A 113 N VAL A 106 SHEET 15 A20 ALA A 137 SER A 144 -1 O GLN A 143 N MSE A 112 SHEET 16 A20 LEU A 150 PHE A 157 -1 O LEU A 152 N SER A 144 SHEET 17 A20 ALA A 184 TYR A 191 -1 O GLY A 188 N GLU A 153 SHEET 18 A20 LEU A 197 LEU A 206 -1 O GLY A 203 N ILE A 187 SHEET 19 A20 TYR A 210 ALA A 224 -1 O TYR A 214 N TYR A 202 SHEET 20 A20 GLN A 227 ASN A 239 -1 O LEU A 229 N ILE A 221 SHEET 1 B 3 THR A 180 ALA A 181 0 SHEET 2 B 3 LEU A 172 ALA A 174 -1 N LEU A 172 O ALA A 181 SHEET 3 B 3 ILE A 283 GLY A 284 -1 O GLY A 284 N TYR A 173 SHEET 1 C19 SER B 18 ASP B 31 0 SHEET 2 C19 ARG B 39 GLU B 51 -1 O LEU B 47 N LEU B 22 SHEET 3 C19 GLY B 60 THR B 76 -1 O LEU B 73 N TRP B 42 SHEET 4 C19 TYR B 97 ILE B 108 -1 O ALA B 103 N ASP B 64 SHEET 5 C19 THR B 111 MSE B 118 -1 O THR B 111 N ILE B 108 SHEET 6 C19 ALA B 137 SER B 144 -1 O ALA B 137 N MSE B 118 SHEET 7 C19 LEU B 150 THR B 158 -1 O ALA B 154 N LEU B 142 SHEET 8 C19 SER B 183 TYR B 191 -1 O GLY B 188 N GLU B 153 SHEET 9 C19 LEU B 197 LEU B 206 -1 O LEU B 201 N GLY B 189 SHEET 10 C19 TYR B 210 ALA B 224 -1 O GLN B 212 N ALA B 204 SHEET 11 C19 GLN B 227 ASN B 239 -1 O ARG B 237 N TYR B 213 SHEET 12 C19 SER B 250 LEU B 262 -1 O THR B 253 N TYR B 236 SHEET 13 C19 HIS B 265 GLY B 276 -1 O PHE B 267 N TYR B 260 SHEET 14 C19 LYS B 314 ASN B 323 -1 O GLN B 317 N ALA B 270 SHEET 15 C19 LEU B 332 ILE B 344 -1 O LYS B 342 N LYS B 314 SHEET 16 C19 GLY B 365 VAL B 377 -1 O HIS B 367 N GLY B 341 SHEET 17 C19 SER B 387 ALA B 397 -1 O PHE B 388 N TYR B 376 SHEET 18 C19 ASN B 407 SER B 418 -1 O ARG B 410 N ARG B 391 SHEET 19 C19 SER B 18 ASP B 31 -1 N ASN B 29 O PHE B 409 SHEET 1 D 3 GLU B 179 THR B 180 0 SHEET 2 D 3 LEU B 172 ALA B 174 -1 N ALA B 174 O GLU B 179 SHEET 3 D 3 ILE B 283 PHE B 285 -1 O GLY B 284 N TYR B 173 LINK C GLY A 1 N MSE A 2 1555 1555 1.33 LINK C MSE A 2 N PHE A 3 1555 1555 1.33 LINK C THR A 111 N MSE A 112 1555 1555 1.32 LINK C MSE A 112 N LEU A 113 1555 1555 1.33 LINK C GLU A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N GLN A 119 1555 1555 1.33 LINK C PHE A 334 N MSE A 335 1555 1555 1.33 LINK C MSE A 335 N VAL A 336 1555 1555 1.33 LINK C LYS A 348 N MSE A 349 1555 1555 1.33 LINK C MSE A 349 N SER A 350 1555 1555 1.33 LINK C GLY B 1 N MSE B 2 1555 1555 1.33 LINK C MSE B 2 N PHE B 3 1555 1555 1.32 LINK C THR B 111 N MSE B 112 1555 1555 1.33 LINK C MSE B 112 N LEU B 113 1555 1555 1.33 LINK C GLU B 117 N MSE B 118 1555 1555 1.33 LINK C MSE B 118 N GLN B 119 1555 1555 1.33 LINK C PHE B 334 N MSE B 335 1555 1555 1.33 LINK C MSE B 335 N VAL B 336 1555 1555 1.33 LINK C LYS B 348 N MSE B 349 1555 1555 1.33 LINK C MSE B 349 N SER B 350 1555 1555 1.33 CISPEP 1 ALA B 122 PRO B 123 0 1.47 SITE 1 AC1 8 SER A 109 THR A 111 LEU A 142 GLU A 146 SITE 2 AC1 8 TYR B 27 TRP B 42 PHE B 388 VAL B 413 SITE 1 AC2 1 PHE A 231 SITE 1 AC3 7 ILE A 14 GLU A 15 TYR A 50 ALA A 65 SITE 2 AC3 7 GLU A 363 LEU A 420 LEU B 256 SITE 1 AC4 5 TYR B 260 PHE B 267 LEU B 269 ARG B 319 SITE 2 AC4 5 VAL B 336 SITE 1 AC5 5 VAL A 329 TYR A 376 PHE A 409 TYR B 191 SITE 2 AC5 5 LEU B 201 SITE 1 AC6 6 TYR A 320 VAL A 336 TRP A 394 C8E A 433 SITE 2 AC6 6 THR B 111 GLU B 146 SITE 1 AC7 7 PHE A 267 THR A 268 ALA A 318 ARG A 319 SITE 2 AC7 7 THR A 370 C8E A 432 C8E A 434 SITE 1 AC8 3 TYR A 338 C8E A 433 ILE B 14 CRYST1 111.370 97.525 95.788 90.00 119.63 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008979 0.000000 0.005107 0.00000 SCALE2 0.000000 0.010254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012010 0.00000