data_2OG0 # _entry.id 2OG0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OG0 pdb_00002og0 10.2210/pdb2og0/pdb NDB PD0961 ? ? RCSB RCSB041088 ? ? WWPDB D_1000041088 ? ? # _pdbx_database_status.entry_id 2OG0 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-01-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Papagiannis, C.V.' 1 'Sam, M.D.' 2 'Abbani, M.A.' 3 'Cascio, D.' 4 'Yoo, D.' 5 'Clubb, R.T.' 6 'Johnson, R.C.' 7 # _citation.id primary _citation.title 'Fis targets assembly of the xis nucleoprotein filament to promote excisive recombination by phage lambda.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 367 _citation.page_first 328 _citation.page_last 343 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17275024 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.12.071 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Papagiannis, C.V.' 1 ? primary 'Sam, M.D.' 2 ? primary 'Abbani, M.A.' 3 ? primary 'Yoo, D.' 4 ? primary 'Cascio, D.' 5 ? primary 'Clubb, R.T.' 6 ? primary 'Johnson, R.C.' 7 ? # _cell.length_a 57.483 _cell.length_b 57.483 _cell.length_c 163.613 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2OG0 _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'H 3' _symmetry.entry_id 2OG0 _symmetry.Int_Tables_number 146 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*TP*AP*TP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*T)-3'" 5542.596 1 ? ? ? ? 2 polymer syn "5'-D(*AP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*AP*TP*AP*C)-3'" 5485.622 1 ? ? ? ? 3 polymer man Excisionase 6425.388 2 ? C28S 'XIS (Residues: 1-55)' ? 4 water nat water 18.015 174 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DA)(DT)(DT)(DA)(DT)(DG)(DT)(DA)(DG)(DT)(DC)(DT)(DG)(DT)(DT)(DT)' GTATTATGTAGTCTGTTT C ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DC)(DA)(DG)(DA)(DC)(DT)(DA)(DC)(DA)(DT)(DA)(DA)(DT)(DA)(DC)' AAACAGACTACATAATAC D ? 3 'polypeptide(L)' no no MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDL MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVDL A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DA n 1 4 DT n 1 5 DT n 1 6 DA n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DA n 1 11 DG n 1 12 DT n 1 13 DC n 1 14 DT n 1 15 DG n 1 16 DT n 1 17 DT n 1 18 DT n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DC n 2 5 DA n 2 6 DG n 2 7 DA n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DC n 2 12 DA n 2 13 DT n 2 14 DA n 2 15 DA n 2 16 DT n 2 17 DA n 2 18 DC n 3 1 MET n 3 2 TYR n 3 3 LEU n 3 4 THR n 3 5 LEU n 3 6 GLN n 3 7 GLU n 3 8 TRP n 3 9 ASN n 3 10 ALA n 3 11 ARG n 3 12 GLN n 3 13 ARG n 3 14 ARG n 3 15 PRO n 3 16 ARG n 3 17 SER n 3 18 LEU n 3 19 GLU n 3 20 THR n 3 21 VAL n 3 22 ARG n 3 23 ARG n 3 24 TRP n 3 25 VAL n 3 26 ARG n 3 27 GLU n 3 28 SER n 3 29 ARG n 3 30 ILE n 3 31 PHE n 3 32 PRO n 3 33 PRO n 3 34 PRO n 3 35 VAL n 3 36 LYS n 3 37 ASP n 3 38 GLY n 3 39 ARG n 3 40 GLU n 3 41 TYR n 3 42 LEU n 3 43 PHE n 3 44 HIS n 3 45 GLU n 3 46 SER n 3 47 ALA n 3 48 VAL n 3 49 LYS n 3 50 VAL n 3 51 ASP n 3 52 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus 'Lambda-like viruses' _entity_src_gen.pdbx_gene_src_gene xis _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain VIRUS _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacteria phage lambda' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10710 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VXIS_LAMBD P03699 3 MYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPVKDGREYLFHESAVKVDL 1 ? 2 PDB 2OG0 2OG0 1 ? ? ? 3 PDB 2OG0 2OG0 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OG0 A 1 ? 52 ? P03699 1 ? 52 ? 1 52 2 1 2OG0 B 1 ? 52 ? P03699 1 ? 52 ? 1 52 3 2 2OG0 C 1 ? 18 ? 2OG0 1 ? 18 ? 1 18 4 3 2OG0 D 1 ? 18 ? 2OG0 19 ? 36 ? 19 36 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OG0 SER A 28 ? UNP P03699 CYS 28 'engineered mutation' 28 1 2 2OG0 SER B 28 ? UNP P03699 CYS 28 'engineered mutation' 28 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2OG0 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;30% Polyethylene Glycol monomethyl ether 2000, 0.2 M Ammonium Sulfate and 0.1 M Sodium Acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Polyethylene Glycol monomethyl ether' ? ? ? 1 2 1 'Ammonium Sulfate' ? ? ? 1 3 1 'Sodium Acetate' ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'Polyethylene Glycol monomethyl ether' ? ? ? 1 6 2 'Ammonium Sulfate' ? ? ? 1 7 2 'Sodium Acetate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2004-01-29 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Confocal Mirrors' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2OG0 _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 80.000 _reflns.number_obs 15654 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 20.600 _reflns.pdbx_chi_squared 1.038 _reflns.percent_possible_obs 97.800 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 15654 _reflns.pdbx_Rsym_value 0.071 _reflns.B_iso_Wilson_estimate 37.5 _reflns.pdbx_redundancy 10.32 _reflns.R_free_details ? _reflns.pdbx_scaling_rejects ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.409 _reflns_shell.meanI_over_sigI_obs 3.71 _reflns_shell.pdbx_Rsym_value 0.409 _reflns_shell.pdbx_chi_squared 0.996 _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1330 _reflns_shell.percent_possible_all 82.50 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2OG0 _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 54.230 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.940 _refine.ls_number_reflns_obs 15573 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.194 _refine.ls_R_factor_R_work 0.191 _refine.ls_R_factor_R_free 0.248 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 779 _refine.B_iso_mean 26.393 _refine.aniso_B[1][1] 1.330 _refine.aniso_B[2][2] 1.330 _refine.aniso_B[3][3] -1.990 _refine.aniso_B[1][2] 0.660 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.pdbx_overall_ESU_R 0.182 _refine.pdbx_overall_ESU_R_Free 0.168 _refine.overall_SU_ML 0.113 _refine.overall_SU_B 7.058 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 1RH6' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2OG0 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.1868 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 898 _refine_hist.pdbx_number_atoms_nucleic_acid 732 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 1804 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 54.230 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1742 0.017 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1029 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2507 2.170 2.478 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2491 1.229 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 101 5.634 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 52 30.682 20.385 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 166 17.288 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18 19.833 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 268 0.098 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1362 0.010 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 225 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 249 0.183 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1097 0.219 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 679 0.212 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 674 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 152 0.164 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 23 0.206 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 72 0.263 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 19 0.209 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 665 1.200 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 198 0.287 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 848 1.433 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1623 2.342 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1659 3.113 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 81.320 _refine_ls_shell.number_reflns_R_work 909 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.385 _refine_ls_shell.R_factor_R_free 0.501 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 962 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OG0 _struct.title 'Crystal Structure of the Lambda Xis-DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OG0 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;PROTEIN-DNA COMPLEX, DNA ARCHITECTURAL PROTEIN, 'WINGED'HELIX PROTEIN, PHAGE EXCISION, SITE-SPECIFIC RECOMBINATION RECOMBINATION, DNA BINDING PROTEIN-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU C 5 ? ARG C 11 ? LEU A 5 ARG A 11 1 ? 7 HELX_P HELX_P2 2 SER C 17 ? GLU C 27 ? SER A 17 GLU A 27 1 ? 11 HELX_P HELX_P3 3 LEU D 5 ? ARG D 11 ? LEU B 5 ARG B 11 1 ? 7 HELX_P HELX_P4 4 SER D 17 ? GLU D 27 ? SER B 17 GLU B 27 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 18 N3 ? ? C DG 1 D DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 18 O2 ? ? C DG 1 D DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 1 D DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 17 N1 ? ? C DT 2 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 17 N6 ? ? C DT 2 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 16 N3 ? ? C DA 3 D DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 16 O4 ? ? C DA 3 D DT 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 15 N1 ? ? C DT 4 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 15 N6 ? ? C DT 4 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 14 N1 ? ? C DT 5 D DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 14 N6 ? ? C DT 5 D DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 13 N3 ? ? C DA 6 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 13 O4 ? ? C DA 6 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 7 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 7 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 11 N3 ? ? C DG 8 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 11 O2 ? ? C DG 8 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 11 N4 ? ? C DG 8 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 10 N1 ? ? C DT 9 D DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 10 N6 ? ? C DT 9 D DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 9 N3 ? ? C DA 10 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 9 O4 ? ? C DA 10 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 8 N3 ? ? C DG 11 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 8 O2 ? ? C DG 11 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 8 N4 ? ? C DG 11 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 7 N1 ? ? C DT 12 D DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 7 N6 ? ? C DT 12 D DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 5 N1 ? ? C DT 14 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 5 N6 ? ? C DT 14 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 4 N3 ? ? C DG 15 D DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 4 O2 ? ? C DG 15 D DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 4 N4 ? ? C DG 15 D DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 3 N1 ? ? C DT 16 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 3 N6 ? ? C DT 16 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DT 17 N3 ? ? ? 1_555 B DA 2 N1 ? ? C DT 17 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 17 O4 ? ? ? 1_555 B DA 2 N6 ? ? C DT 17 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 18 N3 ? ? ? 1_555 B DA 1 N1 ? ? C DT 18 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 18 O4 ? ? ? 1_555 B DA 1 N6 ? ? C DT 18 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 31 C . ? PHE 31 A PRO 32 C ? PRO 32 A 1 -8.01 2 PHE 31 D . ? PHE 31 B PRO 32 D ? PRO 32 B 1 -0.32 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 3 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR C 2 ? THR C 4 ? TYR A 2 THR A 4 A 2 GLU C 40 ? HIS C 44 ? GLU A 40 HIS A 44 A 3 VAL C 35 ? ASP C 37 ? VAL A 35 ASP A 37 B 1 ILE C 30 ? PHE C 31 ? ILE A 30 PHE A 31 B 2 VAL C 48 ? LYS C 49 ? VAL A 48 LYS A 49 C 1 LEU D 3 ? THR D 4 ? LEU B 3 THR B 4 C 2 GLU D 40 ? PHE D 43 ? GLU B 40 PHE B 43 C 3 VAL D 35 ? ASP D 37 ? VAL B 35 ASP B 37 D 1 ILE D 30 ? PHE D 31 ? ILE B 30 PHE B 31 D 2 VAL D 48 ? LYS D 49 ? VAL B 48 LYS B 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU C 3 ? N LEU A 3 O PHE C 43 ? O PHE A 43 A 2 3 O GLU C 40 ? O GLU A 40 N ASP C 37 ? N ASP A 37 B 1 2 N PHE C 31 ? N PHE A 31 O VAL C 48 ? O VAL A 48 C 1 2 N LEU D 3 ? N LEU B 3 O PHE D 43 ? O PHE B 43 C 2 3 O LEU D 42 ? O LEU B 42 N VAL D 35 ? N VAL B 35 D 1 2 N PHE D 31 ? N PHE B 31 O VAL D 48 ? O VAL B 48 # _atom_sites.entry_id 2OG0 _atom_sites.fract_transf_matrix[1][1] 0.017396 _atom_sites.fract_transf_matrix[1][2] 0.010044 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020088 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006112 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G C . n A 1 2 DT 2 2 2 DT T C . n A 1 3 DA 3 3 3 DA A C . n A 1 4 DT 4 4 4 DT T C . n A 1 5 DT 5 5 5 DT T C . n A 1 6 DA 6 6 6 DA A C . n A 1 7 DT 7 7 7 DT T C . n A 1 8 DG 8 8 8 DG G C . n A 1 9 DT 9 9 9 DT T C . n A 1 10 DA 10 10 10 DA A C . n A 1 11 DG 11 11 11 DG G C . n A 1 12 DT 12 12 12 DT T C . n A 1 13 DC 13 13 13 DC C C . n A 1 14 DT 14 14 14 DT T C . n A 1 15 DG 15 15 15 DG G C . n A 1 16 DT 16 16 16 DT T C . n A 1 17 DT 17 17 17 DT T C . n A 1 18 DT 18 18 18 DT T C . n B 2 1 DA 1 19 19 DA A D . n B 2 2 DA 2 20 20 DA A D . n B 2 3 DA 3 21 21 DA A D . n B 2 4 DC 4 22 22 DC C D . n B 2 5 DA 5 23 23 DA A D . n B 2 6 DG 6 24 24 DG G D . n B 2 7 DA 7 25 25 DA A D . n B 2 8 DC 8 26 26 DC C D . n B 2 9 DT 9 27 27 DT T D . n B 2 10 DA 10 28 28 DA A D . n B 2 11 DC 11 29 29 DC C D . n B 2 12 DA 12 30 30 DA A D . n B 2 13 DT 13 31 31 DT T D . n B 2 14 DA 14 32 32 DA A D . n B 2 15 DA 15 33 33 DA A D . n B 2 16 DT 16 34 34 DT T D . n B 2 17 DA 17 35 35 DA A D . n B 2 18 DC 18 36 36 DC C D . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 TYR 2 2 2 TYR TYR A . n C 3 3 LEU 3 3 3 LEU LEU A . n C 3 4 THR 4 4 4 THR THR A . n C 3 5 LEU 5 5 5 LEU LEU A . n C 3 6 GLN 6 6 6 GLN GLN A . n C 3 7 GLU 7 7 7 GLU GLU A . n C 3 8 TRP 8 8 8 TRP TRP A . n C 3 9 ASN 9 9 9 ASN ASN A . n C 3 10 ALA 10 10 10 ALA ALA A . n C 3 11 ARG 11 11 11 ARG ARG A . n C 3 12 GLN 12 12 12 GLN GLN A . n C 3 13 ARG 13 13 13 ARG ARG A . n C 3 14 ARG 14 14 14 ARG ARG A . n C 3 15 PRO 15 15 15 PRO PRO A . n C 3 16 ARG 16 16 16 ARG ARG A . n C 3 17 SER 17 17 17 SER SER A . n C 3 18 LEU 18 18 18 LEU LEU A . n C 3 19 GLU 19 19 19 GLU GLU A . n C 3 20 THR 20 20 20 THR THR A . n C 3 21 VAL 21 21 21 VAL VAL A . n C 3 22 ARG 22 22 22 ARG ARG A . n C 3 23 ARG 23 23 23 ARG ARG A . n C 3 24 TRP 24 24 24 TRP TRP A . n C 3 25 VAL 25 25 25 VAL VAL A . n C 3 26 ARG 26 26 26 ARG ARG A . n C 3 27 GLU 27 27 27 GLU GLU A . n C 3 28 SER 28 28 28 SER SER A . n C 3 29 ARG 29 29 29 ARG ARG A . n C 3 30 ILE 30 30 30 ILE ILE A . n C 3 31 PHE 31 31 31 PHE PHE A . n C 3 32 PRO 32 32 32 PRO PRO A . n C 3 33 PRO 33 33 33 PRO PRO A . n C 3 34 PRO 34 34 34 PRO PRO A . n C 3 35 VAL 35 35 35 VAL VAL A . n C 3 36 LYS 36 36 36 LYS LYS A . n C 3 37 ASP 37 37 37 ASP ASP A . n C 3 38 GLY 38 38 38 GLY GLY A . n C 3 39 ARG 39 39 39 ARG ARG A . n C 3 40 GLU 40 40 40 GLU GLU A . n C 3 41 TYR 41 41 41 TYR TYR A . n C 3 42 LEU 42 42 42 LEU LEU A . n C 3 43 PHE 43 43 43 PHE PHE A . n C 3 44 HIS 44 44 44 HIS HIS A . n C 3 45 GLU 45 45 45 GLU GLU A . n C 3 46 SER 46 46 46 SER SER A . n C 3 47 ALA 47 47 47 ALA ALA A . n C 3 48 VAL 48 48 48 VAL VAL A . n C 3 49 LYS 49 49 49 LYS LYS A . n C 3 50 VAL 50 50 50 VAL VAL A . n C 3 51 ASP 51 51 51 ASP ASP A . n C 3 52 LEU 52 52 ? ? ? A . n D 3 1 MET 1 1 1 MET MET B . n D 3 2 TYR 2 2 2 TYR TYR B . n D 3 3 LEU 3 3 3 LEU LEU B . n D 3 4 THR 4 4 4 THR THR B . n D 3 5 LEU 5 5 5 LEU LEU B . n D 3 6 GLN 6 6 6 GLN GLN B . n D 3 7 GLU 7 7 7 GLU GLU B . n D 3 8 TRP 8 8 8 TRP TRP B . n D 3 9 ASN 9 9 9 ASN ASN B . n D 3 10 ALA 10 10 10 ALA ALA B . n D 3 11 ARG 11 11 11 ARG ARG B . n D 3 12 GLN 12 12 12 GLN GLN B . n D 3 13 ARG 13 13 13 ARG ARG B . n D 3 14 ARG 14 14 14 ARG ARG B . n D 3 15 PRO 15 15 15 PRO PRO B . n D 3 16 ARG 16 16 16 ARG ARG B . n D 3 17 SER 17 17 17 SER SER B . n D 3 18 LEU 18 18 18 LEU LEU B . n D 3 19 GLU 19 19 19 GLU GLU B . n D 3 20 THR 20 20 20 THR THR B . n D 3 21 VAL 21 21 21 VAL VAL B . n D 3 22 ARG 22 22 22 ARG ARG B . n D 3 23 ARG 23 23 23 ARG ARG B . n D 3 24 TRP 24 24 24 TRP TRP B . n D 3 25 VAL 25 25 25 VAL VAL B . n D 3 26 ARG 26 26 26 ARG ARG B . n D 3 27 GLU 27 27 27 GLU GLU B . n D 3 28 SER 28 28 28 SER SER B . n D 3 29 ARG 29 29 29 ARG ARG B . n D 3 30 ILE 30 30 30 ILE ILE B . n D 3 31 PHE 31 31 31 PHE PHE B . n D 3 32 PRO 32 32 32 PRO PRO B . n D 3 33 PRO 33 33 33 PRO PRO B . n D 3 34 PRO 34 34 34 PRO PRO B . n D 3 35 VAL 35 35 35 VAL VAL B . n D 3 36 LYS 36 36 36 LYS LYS B . n D 3 37 ASP 37 37 37 ASP ASP B . n D 3 38 GLY 38 38 38 GLY GLY B . n D 3 39 ARG 39 39 39 ARG ARG B . n D 3 40 GLU 40 40 40 GLU GLU B . n D 3 41 TYR 41 41 41 TYR TYR B . n D 3 42 LEU 42 42 42 LEU LEU B . n D 3 43 PHE 43 43 43 PHE PHE B . n D 3 44 HIS 44 44 44 HIS HIS B . n D 3 45 GLU 45 45 45 GLU GLU B . n D 3 46 SER 46 46 46 SER SER B . n D 3 47 ALA 47 47 47 ALA ALA B . n D 3 48 VAL 48 48 48 VAL VAL B . n D 3 49 LYS 49 49 49 LYS LYS B . n D 3 50 VAL 50 50 50 VAL VAL B . n D 3 51 ASP 51 51 51 ASP ASP B . n D 3 52 LEU 52 52 52 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 19 2 HOH HOH C . E 4 HOH 2 20 6 HOH HOH C . E 4 HOH 3 21 11 HOH HOH C . E 4 HOH 4 22 13 HOH HOH C . E 4 HOH 5 23 14 HOH HOH C . E 4 HOH 6 24 17 HOH HOH C . E 4 HOH 7 25 18 HOH HOH C . E 4 HOH 8 26 19 HOH HOH C . E 4 HOH 9 27 21 HOH HOH C . E 4 HOH 10 28 23 HOH HOH C . E 4 HOH 11 29 25 HOH HOH C . E 4 HOH 12 30 29 HOH HOH C . E 4 HOH 13 31 31 HOH HOH C . E 4 HOH 14 32 34 HOH HOH C . E 4 HOH 15 33 35 HOH HOH C . E 4 HOH 16 34 44 HOH HOH C . E 4 HOH 17 35 46 HOH HOH C . E 4 HOH 18 36 47 HOH HOH C . E 4 HOH 19 37 48 HOH HOH C . E 4 HOH 20 38 49 HOH HOH C . E 4 HOH 21 39 51 HOH HOH C . E 4 HOH 22 40 53 HOH HOH C . E 4 HOH 23 41 54 HOH HOH C . E 4 HOH 24 42 59 HOH HOH C . E 4 HOH 25 43 61 HOH HOH C . E 4 HOH 26 44 63 HOH HOH C . E 4 HOH 27 45 66 HOH HOH C . E 4 HOH 28 46 69 HOH HOH C . E 4 HOH 29 47 71 HOH HOH C . E 4 HOH 30 48 72 HOH HOH C . E 4 HOH 31 49 73 HOH HOH C . E 4 HOH 32 50 77 HOH HOH C . E 4 HOH 33 51 80 HOH HOH C . E 4 HOH 34 52 82 HOH HOH C . E 4 HOH 35 53 83 HOH HOH C . E 4 HOH 36 54 84 HOH HOH C . E 4 HOH 37 55 87 HOH HOH C . E 4 HOH 38 56 88 HOH HOH C . E 4 HOH 39 57 90 HOH HOH C . E 4 HOH 40 58 92 HOH HOH C . E 4 HOH 41 59 94 HOH HOH C . E 4 HOH 42 60 101 HOH HOH C . E 4 HOH 43 61 102 HOH HOH C . E 4 HOH 44 62 104 HOH HOH C . E 4 HOH 45 63 114 HOH HOH C . E 4 HOH 46 64 115 HOH HOH C . E 4 HOH 47 65 119 HOH HOH C . E 4 HOH 48 66 121 HOH HOH C . E 4 HOH 49 67 125 HOH HOH C . E 4 HOH 50 68 130 HOH HOH C . E 4 HOH 51 69 132 HOH HOH C . E 4 HOH 52 70 133 HOH HOH C . E 4 HOH 53 71 142 HOH HOH C . E 4 HOH 54 72 144 HOH HOH C . E 4 HOH 55 73 158 HOH HOH C . E 4 HOH 56 74 167 HOH HOH C . E 4 HOH 57 75 172 HOH HOH C . F 4 HOH 1 37 1 HOH HOH D . F 4 HOH 2 38 5 HOH HOH D . F 4 HOH 3 39 7 HOH HOH D . F 4 HOH 4 40 12 HOH HOH D . F 4 HOH 5 41 24 HOH HOH D . F 4 HOH 6 42 27 HOH HOH D . F 4 HOH 7 43 28 HOH HOH D . F 4 HOH 8 44 38 HOH HOH D . F 4 HOH 9 45 55 HOH HOH D . F 4 HOH 10 46 57 HOH HOH D . F 4 HOH 11 47 60 HOH HOH D . F 4 HOH 12 48 64 HOH HOH D . F 4 HOH 13 49 65 HOH HOH D . F 4 HOH 14 50 67 HOH HOH D . F 4 HOH 15 51 68 HOH HOH D . F 4 HOH 16 52 79 HOH HOH D . F 4 HOH 17 53 86 HOH HOH D . F 4 HOH 18 54 91 HOH HOH D . F 4 HOH 19 55 97 HOH HOH D . F 4 HOH 20 56 99 HOH HOH D . F 4 HOH 21 57 103 HOH HOH D . F 4 HOH 22 58 106 HOH HOH D . F 4 HOH 23 59 108 HOH HOH D . F 4 HOH 24 60 110 HOH HOH D . F 4 HOH 25 61 124 HOH HOH D . F 4 HOH 26 62 127 HOH HOH D . F 4 HOH 27 63 128 HOH HOH D . F 4 HOH 28 64 129 HOH HOH D . F 4 HOH 29 65 134 HOH HOH D . F 4 HOH 30 66 135 HOH HOH D . F 4 HOH 31 67 136 HOH HOH D . F 4 HOH 32 68 137 HOH HOH D . F 4 HOH 33 69 138 HOH HOH D . F 4 HOH 34 70 139 HOH HOH D . F 4 HOH 35 71 143 HOH HOH D . F 4 HOH 36 72 146 HOH HOH D . F 4 HOH 37 73 148 HOH HOH D . F 4 HOH 38 74 150 HOH HOH D . F 4 HOH 39 75 151 HOH HOH D . F 4 HOH 40 76 152 HOH HOH D . F 4 HOH 41 77 155 HOH HOH D . F 4 HOH 42 78 157 HOH HOH D . F 4 HOH 43 79 160 HOH HOH D . F 4 HOH 44 80 164 HOH HOH D . F 4 HOH 45 81 165 HOH HOH D . F 4 HOH 46 82 166 HOH HOH D . F 4 HOH 47 83 168 HOH HOH D . F 4 HOH 48 84 169 HOH HOH D . G 4 HOH 1 53 22 HOH HOH A . G 4 HOH 2 54 52 HOH HOH A . G 4 HOH 3 55 58 HOH HOH A . G 4 HOH 4 56 62 HOH HOH A . G 4 HOH 5 57 74 HOH HOH A . G 4 HOH 6 58 75 HOH HOH A . G 4 HOH 7 59 85 HOH HOH A . G 4 HOH 8 60 89 HOH HOH A . G 4 HOH 9 61 95 HOH HOH A . G 4 HOH 10 62 96 HOH HOH A . G 4 HOH 11 63 109 HOH HOH A . G 4 HOH 12 64 111 HOH HOH A . G 4 HOH 13 65 112 HOH HOH A . G 4 HOH 14 66 131 HOH HOH A . G 4 HOH 15 67 141 HOH HOH A . G 4 HOH 16 68 145 HOH HOH A . G 4 HOH 17 69 159 HOH HOH A . G 4 HOH 18 70 161 HOH HOH A . G 4 HOH 19 71 162 HOH HOH A . G 4 HOH 20 72 163 HOH HOH A . H 4 HOH 1 53 3 HOH HOH B . H 4 HOH 2 54 4 HOH HOH B . H 4 HOH 3 55 8 HOH HOH B . H 4 HOH 4 56 9 HOH HOH B . H 4 HOH 5 57 10 HOH HOH B . H 4 HOH 6 58 15 HOH HOH B . H 4 HOH 7 59 16 HOH HOH B . H 4 HOH 8 60 20 HOH HOH B . H 4 HOH 9 61 26 HOH HOH B . H 4 HOH 10 62 30 HOH HOH B . H 4 HOH 11 63 32 HOH HOH B . H 4 HOH 12 64 33 HOH HOH B . H 4 HOH 13 65 36 HOH HOH B . H 4 HOH 14 66 37 HOH HOH B . H 4 HOH 15 67 39 HOH HOH B . H 4 HOH 16 68 40 HOH HOH B . H 4 HOH 17 69 41 HOH HOH B . H 4 HOH 18 70 42 HOH HOH B . H 4 HOH 19 71 43 HOH HOH B . H 4 HOH 20 72 45 HOH HOH B . H 4 HOH 21 73 50 HOH HOH B . H 4 HOH 22 74 56 HOH HOH B . H 4 HOH 23 75 70 HOH HOH B . H 4 HOH 24 76 76 HOH HOH B . H 4 HOH 25 77 78 HOH HOH B . H 4 HOH 26 78 81 HOH HOH B . H 4 HOH 27 79 93 HOH HOH B . H 4 HOH 28 80 98 HOH HOH B . H 4 HOH 29 81 100 HOH HOH B . H 4 HOH 30 82 105 HOH HOH B . H 4 HOH 31 83 107 HOH HOH B . H 4 HOH 32 84 113 HOH HOH B . H 4 HOH 33 85 116 HOH HOH B . H 4 HOH 34 86 117 HOH HOH B . H 4 HOH 35 87 118 HOH HOH B . H 4 HOH 36 88 120 HOH HOH B . H 4 HOH 37 89 122 HOH HOH B . H 4 HOH 38 90 123 HOH HOH B . H 4 HOH 39 91 126 HOH HOH B . H 4 HOH 40 92 140 HOH HOH B . H 4 HOH 41 93 147 HOH HOH B . H 4 HOH 42 94 149 HOH HOH B . H 4 HOH 43 95 153 HOH HOH B . H 4 HOH 44 96 154 HOH HOH B . H 4 HOH 45 97 156 HOH HOH B . H 4 HOH 46 98 170 HOH HOH B . H 4 HOH 47 99 171 HOH HOH B . H 4 HOH 48 100 173 HOH HOH B . H 4 HOH 49 101 174 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-13 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2018-04-04 6 'Structure model' 1 5 2021-10-20 7 'Structure model' 1 6 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 7 'Structure model' 'Data collection' 8 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' diffrn_source 3 6 'Structure model' database_2 4 6 'Structure model' struct_ref_seq_dif 5 7 'Structure model' chem_comp_atom 6 7 'Structure model' chem_comp_bond 7 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_source.type' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' 4 6 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 29.5830 31.6280 42.4770 -0.1284 -0.1392 -0.2021 -0.0460 0.0140 -0.0114 7.7978 7.1743 6.5108 -3.0741 -2.8703 2.8803 -0.1314 0.2829 -0.1516 0.1820 0.1884 -0.2895 -0.6518 -0.4242 0.2165 'X-RAY DIFFRACTION' 2 ? refined 29.7970 36.1210 12.2460 -0.0703 -0.1306 -0.0661 -0.0012 -0.0311 -0.0042 3.7392 2.6174 2.1326 -0.2019 0.7554 0.1753 -0.0902 0.0319 0.0583 -0.0642 0.1539 -0.0709 0.0586 0.0481 0.1538 'X-RAY DIFFRACTION' 3 ? refined 16.4110 29.0090 11.7540 0.0451 0.0052 -0.0283 0.0039 0.0101 -0.0354 0.9142 1.3366 2.2845 0.3745 -0.0924 -1.6786 0.0386 0.0823 -0.1209 -0.0542 0.0335 0.0064 0.0366 -0.1663 -0.2335 'X-RAY DIFFRACTION' 4 ? refined 17.3760 27.8640 12.2360 -0.0211 -0.0563 -0.0591 -0.0135 0.0120 -0.0387 1.2280 1.1807 2.4562 0.1118 -1.3212 -1.2208 -0.0883 0.1361 -0.0478 0.0125 0.0458 0.1261 0.0544 0.1202 -0.0625 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 C 1 C 51 ALL A 1 A 51 'X-RAY DIFFRACTION' ? 2 2 D 1 D 52 ALL B 1 B 52 'X-RAY DIFFRACTION' ? 3 3 A 1 A 18 ALL C 1 C 18 'X-RAY DIFFRACTION' ? 4 4 B 1 B 18 ALL D 19 D 36 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CrystalClear '(MSC/RIGAKU)' ? ? ? ? 'data collection' ? ? ? 5 EPMR . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N7 C DG 8 ? ? C8 C DG 8 ? ? 1.268 1.305 -0.037 0.006 N 2 1 "O3'" C DG 11 ? ? "C3'" C DG 11 ? ? 1.382 1.419 -0.037 0.006 N 3 1 P C DT 14 ? ? "O5'" C DT 14 ? ? 1.659 1.593 0.066 0.010 N 4 1 "O3'" D DC 29 ? ? "C3'" D DC 29 ? ? 1.380 1.419 -0.039 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 113.60 108.30 5.30 0.30 N 2 1 C4 C DT 2 ? ? C5 C DT 2 ? ? C7 C DT 2 ? ? 123.77 119.00 4.77 0.60 N 3 1 "O4'" C DA 3 ? ? "C1'" C DA 3 ? ? N9 C DA 3 ? ? 102.38 108.00 -5.62 0.70 N 4 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 101.97 108.00 -6.03 0.70 N 5 1 C4 C DT 5 ? ? C5 C DT 5 ? ? C7 C DT 5 ? ? 122.83 119.00 3.83 0.60 N 6 1 C6 C DT 5 ? ? C5 C DT 5 ? ? C7 C DT 5 ? ? 118.73 122.90 -4.17 0.60 N 7 1 "O4'" C DT 7 ? ? "C1'" C DT 7 ? ? N1 C DT 7 ? ? 111.19 108.30 2.89 0.30 N 8 1 "O5'" C DG 8 ? ? P C DG 8 ? ? OP2 C DG 8 ? ? 99.90 105.70 -5.80 0.90 N 9 1 "C3'" C DG 8 ? ? "O3'" C DG 8 ? ? P C DT 9 ? ? 128.72 119.70 9.02 1.20 Y 10 1 "O4'" C DA 10 ? ? "C4'" C DA 10 ? ? "C3'" C DA 10 ? ? 109.63 106.00 3.63 0.60 N 11 1 "C1'" C DA 10 ? ? "O4'" C DA 10 ? ? "C4'" C DA 10 ? ? 103.65 110.10 -6.45 1.00 N 12 1 "O4'" C DA 10 ? ? "C1'" C DA 10 ? ? "C2'" C DA 10 ? ? 110.32 106.80 3.52 0.50 N 13 1 C6 C DA 10 ? ? N1 C DA 10 ? ? C2 C DA 10 ? ? 123.54 118.60 4.94 0.60 N 14 1 C5 C DA 10 ? ? C6 C DA 10 ? ? N1 C DA 10 ? ? 114.23 117.70 -3.47 0.50 N 15 1 "O5'" C DG 11 ? ? P C DG 11 ? ? OP1 C DG 11 ? ? 118.05 110.70 7.35 1.20 N 16 1 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 110.70 108.30 2.40 0.30 N 17 1 "O4'" C DT 12 ? ? "C1'" C DT 12 ? ? N1 C DT 12 ? ? 110.68 108.30 2.38 0.30 N 18 1 N3 C DT 12 ? ? C2 C DT 12 ? ? O2 C DT 12 ? ? 126.15 122.30 3.85 0.60 N 19 1 N3 C DT 12 ? ? C4 C DT 12 ? ? O4 C DT 12 ? ? 124.47 119.90 4.57 0.60 N 20 1 C5 C DT 12 ? ? C4 C DT 12 ? ? O4 C DT 12 ? ? 119.21 124.90 -5.69 0.70 N 21 1 OP1 C DC 13 ? ? P C DC 13 ? ? OP2 C DC 13 ? ? 128.75 119.60 9.15 1.50 N 22 1 "O5'" C DC 13 ? ? P C DC 13 ? ? OP2 C DC 13 ? ? 100.07 105.70 -5.63 0.90 N 23 1 "O4'" C DC 13 ? ? "C4'" C DC 13 ? ? "C3'" C DC 13 ? ? 102.07 104.50 -2.43 0.40 N 24 1 N3 C DC 13 ? ? C2 C DC 13 ? ? O2 C DC 13 ? ? 126.54 121.90 4.63 0.70 N 25 1 P C DT 14 ? ? "O5'" C DT 14 ? ? "C5'" C DT 14 ? ? 130.77 120.90 9.87 1.60 N 26 1 "O4'" C DG 15 ? ? "C1'" C DG 15 ? ? N9 C DG 15 ? ? 114.95 108.30 6.65 0.30 N 27 1 C2 C DG 15 ? ? N3 C DG 15 ? ? C4 C DG 15 ? ? 108.77 111.90 -3.13 0.50 N 28 1 "O4'" C DT 16 ? ? "C1'" C DT 16 ? ? N1 C DT 16 ? ? 101.98 108.00 -6.02 0.70 N 29 1 C4 C DT 17 ? ? C5 C DT 17 ? ? C7 C DT 17 ? ? 123.93 119.00 4.93 0.60 N 30 1 C6 C DT 17 ? ? C5 C DT 17 ? ? C7 C DT 17 ? ? 119.26 122.90 -3.64 0.60 N 31 1 P C DT 18 ? ? "O5'" C DT 18 ? ? "C5'" C DT 18 ? ? 111.16 120.90 -9.74 1.60 N 32 1 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 100.80 108.00 -7.20 0.70 N 33 1 "O4'" D DA 19 ? ? "C1'" D DA 19 ? ? N9 D DA 19 ? ? 110.71 108.30 2.41 0.30 N 34 1 "O4'" D DA 20 ? ? "C1'" D DA 20 ? ? N9 D DA 20 ? ? 111.56 108.30 3.26 0.30 N 35 1 "O4'" D DC 22 ? ? "C1'" D DC 22 ? ? N1 D DC 22 ? ? 102.41 108.00 -5.59 0.70 N 36 1 C2 D DC 22 ? ? N3 D DC 22 ? ? C4 D DC 22 ? ? 124.21 119.90 4.31 0.50 N 37 1 "O5'" D DA 23 ? ? P D DA 23 ? ? OP2 D DA 23 ? ? 98.56 105.70 -7.14 0.90 N 38 1 "O4'" D DG 24 ? ? "C1'" D DG 24 ? ? N9 D DG 24 ? ? 112.15 108.30 3.85 0.30 N 39 1 C4 D DT 27 ? ? C5 D DT 27 ? ? C7 D DT 27 ? ? 124.82 119.00 5.82 0.60 N 40 1 C6 D DT 27 ? ? C5 D DT 27 ? ? C7 D DT 27 ? ? 118.24 122.90 -4.66 0.60 N 41 1 N1 D DA 28 ? ? C6 D DA 28 ? ? N6 D DA 28 ? ? 122.36 118.60 3.76 0.60 N 42 1 "C1'" D DC 29 ? ? "O4'" D DC 29 ? ? "C4'" D DC 29 ? ? 103.54 110.10 -6.56 1.00 N 43 1 "O4'" D DT 31 ? ? "C1'" D DT 31 ? ? N1 D DT 31 ? ? 110.92 108.30 2.62 0.30 N 44 1 "O4'" D DA 32 ? ? "C1'" D DA 32 ? ? N9 D DA 32 ? ? 110.92 108.30 2.62 0.30 N 45 1 "O4'" D DA 33 ? ? "C1'" D DA 33 ? ? N9 D DA 33 ? ? 110.10 108.30 1.80 0.30 N # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id LEU _pdbx_unobs_or_zero_occ_residues.auth_seq_id 52 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id C _pdbx_unobs_or_zero_occ_residues.label_comp_id LEU _pdbx_unobs_or_zero_occ_residues.label_seq_id 52 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2OG0 'double helix' 2OG0 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 18 1_555 0.013 -0.302 0.244 -3.076 -16.579 -2.057 1 C_DG1:DC36_D C 1 ? D 36 ? 19 1 1 A DT 2 1_555 B DA 17 1_555 0.145 -0.393 0.058 -1.567 -6.299 1.129 2 C_DT2:DA35_D C 2 ? D 35 ? 20 1 1 A DA 3 1_555 B DT 16 1_555 -0.167 -0.077 0.056 -2.544 -7.074 3.197 3 C_DA3:DT34_D C 3 ? D 34 ? 20 1 1 A DT 4 1_555 B DA 15 1_555 -0.204 -0.213 0.078 -2.506 -13.801 1.107 4 C_DT4:DA33_D C 4 ? D 33 ? 20 1 1 A DT 5 1_555 B DA 14 1_555 -0.227 -0.263 0.067 -2.301 -9.195 3.007 5 C_DT5:DA32_D C 5 ? D 32 ? 20 1 1 A DA 6 1_555 B DT 13 1_555 -0.132 -0.223 -0.121 -5.176 -6.105 0.541 6 C_DA6:DT31_D C 6 ? D 31 ? 20 1 1 A DT 7 1_555 B DA 12 1_555 -0.002 -0.179 0.256 6.705 -10.301 0.907 7 C_DT7:DA30_D C 7 ? D 30 ? 20 1 1 A DG 8 1_555 B DC 11 1_555 -0.388 -0.218 0.031 -1.344 -10.932 2.080 8 C_DG8:DC29_D C 8 ? D 29 ? 19 1 1 A DT 9 1_555 B DA 10 1_555 -0.084 -0.118 -0.302 4.604 -6.161 -5.180 9 C_DT9:DA28_D C 9 ? D 28 ? 20 1 1 A DA 10 1_555 B DT 9 1_555 -0.039 -0.180 0.057 -1.572 -7.761 1.968 10 C_DA10:DT27_D C 10 ? D 27 ? 20 1 1 A DG 11 1_555 B DC 8 1_555 -0.290 -0.128 0.076 7.018 -8.439 -1.391 11 C_DG11:DC26_D C 11 ? D 26 ? 19 1 1 A DT 12 1_555 B DA 7 1_555 0.001 -0.275 -0.262 9.896 -10.140 5.751 12 C_DT12:DA25_D C 12 ? D 25 ? 20 1 1 A DC 13 1_555 B DG 6 1_555 0.359 -0.308 0.023 -1.493 -14.459 -0.824 13 C_DC13:DG24_D C 13 ? D 24 ? 19 1 1 A DT 14 1_555 B DA 5 1_555 -0.043 -0.130 -0.209 -1.469 -3.672 -3.166 14 C_DT14:DA23_D C 14 ? D 23 ? 20 1 1 A DG 15 1_555 B DC 4 1_555 -0.378 -0.199 -0.074 -6.472 -15.653 1.123 15 C_DG15:DC22_D C 15 ? D 22 ? 19 1 1 A DT 16 1_555 B DA 3 1_555 -0.227 -0.144 0.083 -9.073 -12.907 4.547 16 C_DT16:DA21_D C 16 ? D 21 ? 20 1 1 A DT 17 1_555 B DA 2 1_555 0.044 -0.201 -0.039 -7.921 -13.394 2.950 17 C_DT17:DA20_D C 17 ? D 20 ? 20 1 1 A DT 18 1_555 B DA 1 1_555 -0.206 -0.240 -0.253 -0.191 -15.153 -0.066 18 C_DT18:DA19_D C 18 ? D 19 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 18 1_555 A DT 2 1_555 B DA 17 1_555 -0.091 -1.060 3.245 4.329 3.827 37.438 -2.113 0.682 3.096 5.919 -6.695 37.865 1 CC_DG1DT2:DA35DC36_DD C 1 ? D 36 ? C 2 ? D 35 ? 1 A DT 2 1_555 B DA 17 1_555 A DA 3 1_555 B DT 16 1_555 -0.156 -0.782 3.122 0.679 1.961 34.981 -1.577 0.357 3.072 3.259 -1.128 35.041 2 CC_DT2DA3:DT34DA35_DD C 2 ? D 35 ? C 3 ? D 34 ? 1 A DA 3 1_555 B DT 16 1_555 A DT 4 1_555 B DA 15 1_555 -0.417 -0.555 3.228 0.338 -4.823 34.077 -0.188 0.757 3.269 -8.178 -0.573 34.408 3 CC_DA3DT4:DA33DT34_DD C 3 ? D 34 ? C 4 ? D 33 ? 1 A DT 4 1_555 B DA 15 1_555 A DT 5 1_555 B DA 14 1_555 0.120 -0.129 3.192 -0.175 -3.541 36.596 0.267 -0.213 3.190 -5.623 0.278 36.762 4 CC_DT4DT5:DA32DA33_DD C 4 ? D 33 ? C 5 ? D 32 ? 1 A DT 5 1_555 B DA 14 1_555 A DA 6 1_555 B DT 13 1_555 0.058 -0.364 3.305 0.099 1.305 38.469 -0.715 -0.076 3.292 1.979 -0.150 38.490 5 CC_DT5DA6:DT31DA32_DD C 5 ? D 32 ? C 6 ? D 31 ? 1 A DA 6 1_555 B DT 13 1_555 A DT 7 1_555 B DA 12 1_555 0.512 -0.773 3.023 -6.041 1.790 31.528 -1.686 -1.903 2.831 3.253 10.980 32.136 6 CC_DA6DT7:DA30DT31_DD C 6 ? D 31 ? C 7 ? D 30 ? 1 A DT 7 1_555 B DA 12 1_555 A DG 8 1_555 B DC 11 1_555 -0.477 -1.143 3.278 -0.670 10.108 30.900 -3.729 0.741 2.785 18.363 1.218 32.480 7 CC_DT7DG8:DC29DA30_DD C 7 ? D 30 ? C 8 ? D 29 ? 1 A DG 8 1_555 B DC 11 1_555 A DT 9 1_555 B DA 10 1_555 -0.982 -0.709 3.129 2.451 4.184 30.533 -2.085 2.286 2.922 7.882 -4.618 30.907 8 CC_DG8DT9:DA28DC29_DD C 8 ? D 29 ? C 9 ? D 28 ? 1 A DT 9 1_555 B DA 10 1_555 A DA 10 1_555 B DT 9 1_555 0.528 -0.391 3.375 -1.963 6.211 35.324 -1.539 -1.142 3.229 10.128 3.201 35.900 9 CC_DT9DA10:DT27DA28_DD C 9 ? D 28 ? C 10 ? D 27 ? 1 A DA 10 1_555 B DT 9 1_555 A DG 11 1_555 B DC 8 1_555 -0.382 -0.365 3.162 -0.215 5.323 31.688 -1.574 0.653 3.064 9.663 0.391 32.121 10 CC_DA10DG11:DC26DT27_DD C 10 ? D 27 ? C 11 ? D 26 ? 1 A DG 11 1_555 B DC 8 1_555 A DT 12 1_555 B DA 7 1_555 0.087 -0.263 3.151 3.530 4.258 30.028 -1.312 0.508 3.076 8.131 -6.741 30.521 11 CC_DG11DT12:DA25DC26_DD C 11 ? D 26 ? C 12 ? D 25 ? 1 A DT 12 1_555 B DA 7 1_555 A DC 13 1_555 B DG 6 1_555 0.256 -0.316 3.451 -2.295 2.753 45.113 -0.668 -0.547 3.411 3.581 2.986 45.247 12 CC_DT12DC13:DG24DA25_DD C 12 ? D 25 ? C 13 ? D 24 ? 1 A DC 13 1_555 B DG 6 1_555 A DT 14 1_555 B DA 5 1_555 -0.639 -0.750 3.290 3.444 7.155 27.673 -3.059 2.032 2.910 14.582 -7.019 28.768 13 CC_DC13DT14:DA23DG24_DD C 13 ? D 24 ? C 14 ? D 23 ? 1 A DT 14 1_555 B DA 5 1_555 A DG 15 1_555 B DC 4 1_555 0.807 -0.712 3.326 0.038 12.165 25.735 -4.166 -1.636 2.718 25.571 -0.079 28.422 14 CC_DT14DG15:DC22DA23_DD C 14 ? D 23 ? C 15 ? D 22 ? 1 A DG 15 1_555 B DC 4 1_555 A DT 16 1_555 B DA 3 1_555 -0.578 -0.926 3.309 -0.374 2.348 38.134 -1.712 0.836 3.254 3.590 0.572 38.205 15 CC_DG15DT16:DA21DC22_DD C 15 ? D 22 ? C 16 ? D 21 ? 1 A DT 16 1_555 B DA 3 1_555 A DT 17 1_555 B DA 2 1_555 -0.076 0.084 3.187 -0.440 -1.336 37.747 0.297 0.062 3.183 -2.064 0.680 37.772 16 CC_DT16DT17:DA20DA21_DD C 16 ? D 21 ? C 17 ? D 20 ? 1 A DT 17 1_555 B DA 2 1_555 A DT 18 1_555 B DA 1 1_555 -0.129 -0.187 3.069 -0.192 4.885 35.646 -0.953 0.184 3.018 7.933 0.312 35.969 17 CC_DT17DT18:DA19DA20_DD C 17 ? D 20 ? C 18 ? D 19 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1RH6 _pdbx_initial_refinement_model.details 'PDB ENTRY 1RH6' #