HEADER TRANSPORT PROTEIN 09-JAN-07 2OGW TITLE STRUCTURE OF ABC TYPE ZINC TRANSPORTER FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA PRECURSOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ABC TYPE ZINC TRANSPORTER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: B834 KEYWDS ABC, ZINC, TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SHARMA,M.YOGAVEL REVDAT 4 27-DEC-23 2OGW 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2OGW 1 VERSN REVDAT 2 03-APR-07 2OGW 1 JRNL REVDAT 1 06-MAR-07 2OGW 0 JRNL AUTH B.R.CHANDRA,M.YOGAVEL,A.SHARMA JRNL TITL STRUCTURAL ANALYSIS OF ABC-FAMILY PERIPLASMIC ZINC BINDING JRNL TITL 2 PROTEIN PROVIDES NEW INSIGHTS INTO MECHANISM OF LIGAND JRNL TITL 3 UPTAKE AND RELEASE JRNL REF J.MOL.BIOL. V. 367 970 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17306297 JRNL DOI 10.1016/J.JMB.2007.01.041 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2516 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.4910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4010 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 527 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4290 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5861 ; 1.489 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 5.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;34.547 ;24.892 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 760 ;15.654 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 666 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3260 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2317 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2932 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 477 ; 0.210 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.106 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2756 ; 1.104 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4361 ; 1.499 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1708 ; 2.549 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1471 ; 3.894 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.974 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47173 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 61.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 16.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25000 REMARK 200 FOR SHELL : 3.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200MM AMMONIUM SULFATE, REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.99500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.18900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.99500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.18900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 HIS A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 PHE A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 TRP A 17 REMARK 465 GLY A 18 REMARK 465 GLY A 19 REMARK 465 ALA A 20 REMARK 465 THR A 21 REMARK 465 GLN A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 ASP A 25 REMARK 465 ALA A 26 REMARK 465 SER A 117 REMARK 465 ILE A 118 REMARK 465 HIS A 119 REMARK 465 GLY A 120 REMARK 465 ASP A 121 REMARK 465 ASP A 122 REMARK 465 ASP A 123 REMARK 465 ASP A 124 REMARK 465 HIS A 125 REMARK 465 ASP A 126 REMARK 465 HIS A 127 REMARK 465 ALA A 128 REMARK 465 GLU A 129 REMARK 465 LYS A 130 REMARK 465 SER A 131 REMARK 465 ASP A 132 REMARK 465 GLU A 133 REMARK 465 ASP A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 GLY A 138 REMARK 465 GLY A 309 REMARK 465 ASP A 310 REMARK 465 MSE B 1 REMARK 465 LEU B 2 REMARK 465 HIS B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 THR B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 PHE B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 SER B 13 REMARK 465 ALA B 14 REMARK 465 ALA B 15 REMARK 465 LEU B 16 REMARK 465 TRP B 17 REMARK 465 GLY B 18 REMARK 465 GLY B 19 REMARK 465 ALA B 20 REMARK 465 THR B 21 REMARK 465 GLN B 22 REMARK 465 ALA B 23 REMARK 465 ALA B 24 REMARK 465 ASP B 25 REMARK 465 ALA B 26 REMARK 465 SER B 117 REMARK 465 ILE B 118 REMARK 465 HIS B 119 REMARK 465 GLY B 120 REMARK 465 ASP B 121 REMARK 465 ASP B 122 REMARK 465 ASP B 123 REMARK 465 ASP B 124 REMARK 465 HIS B 125 REMARK 465 ASP B 126 REMARK 465 HIS B 127 REMARK 465 ALA B 128 REMARK 465 GLU B 129 REMARK 465 LYS B 130 REMARK 465 SER B 131 REMARK 465 ASP B 132 REMARK 465 GLU B 133 REMARK 465 ASP B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 465 GLY B 138 REMARK 465 GLY B 309 REMARK 465 ASP B 310 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 516 O HOH A 1013 1.46 REMARK 500 NH2 ARG B 71 O HOH B 992 1.86 REMARK 500 O HOH B 804 O HOH B 1010 1.88 REMARK 500 OD1 ASN A 284 O HOH A 763 1.98 REMARK 500 O HOH A 787 O HOH A 1028 2.01 REMARK 500 OE2 GLU A 59 O HOH A 524 2.07 REMARK 500 NZ LYS A 111 O HOH A 732 2.08 REMARK 500 ND2 ASN B 301 O HOH B 898 2.09 REMARK 500 OG1 THR B 103 O HOH B 904 2.11 REMARK 500 O HOH B 559 O HOH B 1020 2.12 REMARK 500 OE1 GLU B 59 O HOH B 825 2.14 REMARK 500 O HOH A 526 O HOH A 966 2.16 REMARK 500 NZ LYS A 95 O HOH A 889 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 951 O HOH B 950 2575 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 61 70.76 -157.58 REMARK 500 MSE A 85 -85.57 -111.88 REMARK 500 THR A 220 74.30 -118.92 REMARK 500 MSE B 85 -80.67 -113.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 60 NE2 REMARK 620 2 HIS A 143 NE2 114.9 REMARK 620 3 HIS A 207 NE2 105.0 109.9 REMARK 620 4 HOH A 524 O 117.8 108.2 99.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 60 NE2 REMARK 620 2 HIS B 143 NE2 109.9 REMARK 620 3 HIS B 207 NE2 107.4 114.6 REMARK 620 4 HOH B 506 O 118.5 107.9 98.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 DBREF 2OGW A 1 310 UNP P39172 ZNUA_ECOLI 1 310 DBREF 2OGW B 1 310 UNP P39172 ZNUA_ECOLI 1 310 SEQADV 2OGW MSE A 1 UNP P39172 MET 1 MODIFIED RESIDUE SEQADV 2OGW MSE A 85 UNP P39172 MET 85 MODIFIED RESIDUE SEQADV 2OGW MSE A 89 UNP P39172 MET 89 MODIFIED RESIDUE SEQADV 2OGW MSE A 115 UNP P39172 MET 115 MODIFIED RESIDUE SEQADV 2OGW MSE A 142 UNP P39172 MET 142 MODIFIED RESIDUE SEQADV 2OGW MSE A 166 UNP P39172 MET 166 MODIFIED RESIDUE SEQADV 2OGW MSE A 275 UNP P39172 MET 275 MODIFIED RESIDUE SEQADV 2OGW MSE B 1 UNP P39172 MET 1 MODIFIED RESIDUE SEQADV 2OGW MSE B 85 UNP P39172 MET 85 MODIFIED RESIDUE SEQADV 2OGW MSE B 89 UNP P39172 MET 89 MODIFIED RESIDUE SEQADV 2OGW MSE B 115 UNP P39172 MET 115 MODIFIED RESIDUE SEQADV 2OGW MSE B 142 UNP P39172 MET 142 MODIFIED RESIDUE SEQADV 2OGW MSE B 166 UNP P39172 MET 166 MODIFIED RESIDUE SEQADV 2OGW MSE B 275 UNP P39172 MET 275 MODIFIED RESIDUE SEQRES 1 A 310 MSE LEU HIS LYS LYS THR LEU LEU PHE ALA ALA LEU SER SEQRES 2 A 310 ALA ALA LEU TRP GLY GLY ALA THR GLN ALA ALA ASP ALA SEQRES 3 A 310 ALA VAL VAL ALA SER LEU LYS PRO VAL GLY PHE ILE ALA SEQRES 4 A 310 SER ALA ILE ALA ASP GLY VAL THR GLU THR GLU VAL LEU SEQRES 5 A 310 LEU PRO ASP GLY ALA SER GLU HIS ASP TYR SER LEU ARG SEQRES 6 A 310 PRO SER ASP VAL LYS ARG LEU GLN ASN ALA ASP LEU VAL SEQRES 7 A 310 VAL TRP VAL GLY PRO GLU MSE GLU ALA PHE MSE GLN LYS SEQRES 8 A 310 PRO VAL SER LYS LEU PRO GLY ALA LYS GLN VAL THR ILE SEQRES 9 A 310 ALA GLN LEU GLU ASP VAL LYS PRO LEU LEU MSE LYS SER SEQRES 10 A 310 ILE HIS GLY ASP ASP ASP ASP HIS ASP HIS ALA GLU LYS SEQRES 11 A 310 SER ASP GLU ASP HIS HIS HIS GLY ASP PHE ASN MSE HIS SEQRES 12 A 310 LEU TRP LEU SER PRO GLU ILE ALA ARG ALA THR ALA VAL SEQRES 13 A 310 ALA ILE HIS GLY LYS LEU VAL GLU LEU MSE PRO GLN SER SEQRES 14 A 310 ARG ALA LYS LEU ASP ALA ASN LEU LYS ASP PHE GLU ALA SEQRES 15 A 310 GLN LEU ALA SER THR GLU THR GLN VAL GLY ASN GLU LEU SEQRES 16 A 310 ALA PRO LEU LYS GLY LYS GLY TYR PHE VAL PHE HIS ASP SEQRES 17 A 310 ALA TYR GLY TYR PHE GLU LYS GLN PHE GLY LEU THR PRO SEQRES 18 A 310 LEU GLY HIS PHE THR VAL ASN PRO GLU ILE GLN PRO GLY SEQRES 19 A 310 ALA GLN ARG LEU HIS GLU ILE ARG THR GLN LEU VAL GLU SEQRES 20 A 310 GLN LYS ALA THR CYS VAL PHE ALA GLU PRO GLN PHE ARG SEQRES 21 A 310 PRO ALA VAL VAL GLU SER VAL ALA ARG GLY THR SER VAL SEQRES 22 A 310 ARG MSE GLY THR LEU ASP PRO LEU GLY THR ASN ILE LYS SEQRES 23 A 310 LEU GLY LYS THR SER TYR SER GLU PHE LEU SER GLN LEU SEQRES 24 A 310 ALA ASN GLN TYR ALA SER CYS LEU LYS GLY ASP SEQRES 1 B 310 MSE LEU HIS LYS LYS THR LEU LEU PHE ALA ALA LEU SER SEQRES 2 B 310 ALA ALA LEU TRP GLY GLY ALA THR GLN ALA ALA ASP ALA SEQRES 3 B 310 ALA VAL VAL ALA SER LEU LYS PRO VAL GLY PHE ILE ALA SEQRES 4 B 310 SER ALA ILE ALA ASP GLY VAL THR GLU THR GLU VAL LEU SEQRES 5 B 310 LEU PRO ASP GLY ALA SER GLU HIS ASP TYR SER LEU ARG SEQRES 6 B 310 PRO SER ASP VAL LYS ARG LEU GLN ASN ALA ASP LEU VAL SEQRES 7 B 310 VAL TRP VAL GLY PRO GLU MSE GLU ALA PHE MSE GLN LYS SEQRES 8 B 310 PRO VAL SER LYS LEU PRO GLY ALA LYS GLN VAL THR ILE SEQRES 9 B 310 ALA GLN LEU GLU ASP VAL LYS PRO LEU LEU MSE LYS SER SEQRES 10 B 310 ILE HIS GLY ASP ASP ASP ASP HIS ASP HIS ALA GLU LYS SEQRES 11 B 310 SER ASP GLU ASP HIS HIS HIS GLY ASP PHE ASN MSE HIS SEQRES 12 B 310 LEU TRP LEU SER PRO GLU ILE ALA ARG ALA THR ALA VAL SEQRES 13 B 310 ALA ILE HIS GLY LYS LEU VAL GLU LEU MSE PRO GLN SER SEQRES 14 B 310 ARG ALA LYS LEU ASP ALA ASN LEU LYS ASP PHE GLU ALA SEQRES 15 B 310 GLN LEU ALA SER THR GLU THR GLN VAL GLY ASN GLU LEU SEQRES 16 B 310 ALA PRO LEU LYS GLY LYS GLY TYR PHE VAL PHE HIS ASP SEQRES 17 B 310 ALA TYR GLY TYR PHE GLU LYS GLN PHE GLY LEU THR PRO SEQRES 18 B 310 LEU GLY HIS PHE THR VAL ASN PRO GLU ILE GLN PRO GLY SEQRES 19 B 310 ALA GLN ARG LEU HIS GLU ILE ARG THR GLN LEU VAL GLU SEQRES 20 B 310 GLN LYS ALA THR CYS VAL PHE ALA GLU PRO GLN PHE ARG SEQRES 21 B 310 PRO ALA VAL VAL GLU SER VAL ALA ARG GLY THR SER VAL SEQRES 22 B 310 ARG MSE GLY THR LEU ASP PRO LEU GLY THR ASN ILE LYS SEQRES 23 B 310 LEU GLY LYS THR SER TYR SER GLU PHE LEU SER GLN LEU SEQRES 24 B 310 ALA ASN GLN TYR ALA SER CYS LEU LYS GLY ASP MODRES 2OGW MSE A 85 MET SELENOMETHIONINE MODRES 2OGW MSE A 89 MET SELENOMETHIONINE MODRES 2OGW MSE A 115 MET SELENOMETHIONINE MODRES 2OGW MSE A 142 MET SELENOMETHIONINE MODRES 2OGW MSE A 166 MET SELENOMETHIONINE MODRES 2OGW MSE A 275 MET SELENOMETHIONINE MODRES 2OGW MSE B 85 MET SELENOMETHIONINE MODRES 2OGW MSE B 89 MET SELENOMETHIONINE MODRES 2OGW MSE B 115 MET SELENOMETHIONINE MODRES 2OGW MSE B 142 MET SELENOMETHIONINE MODRES 2OGW MSE B 166 MET SELENOMETHIONINE MODRES 2OGW MSE B 275 MET SELENOMETHIONINE HET MSE A 85 8 HET MSE A 89 8 HET MSE A 115 8 HET MSE A 142 8 HET MSE A 166 8 HET MSE A 275 8 HET MSE B 85 8 HET MSE B 89 8 HET MSE B 115 8 HET MSE B 142 8 HET MSE B 166 8 HET MSE B 275 8 HET ZN A 500 1 HET ZN B 501 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *527(H2 O) HELIX 1 1 LEU A 32 ASP A 44 1 13 HELIX 2 2 ARG A 65 ALA A 75 1 11 HELIX 3 3 GLU A 86 PHE A 88 5 3 HELIX 4 4 MSE A 89 LEU A 96 1 8 HELIX 5 5 PRO A 97 ALA A 99 5 3 HELIX 6 6 ALA A 105 LEU A 107 5 3 HELIX 7 7 VAL A 110 LEU A 114 5 5 HELIX 8 8 HIS A 143 LEU A 146 5 4 HELIX 9 9 SER A 147 MSE A 166 1 20 HELIX 10 10 SER A 169 ALA A 196 1 28 HELIX 11 11 PRO A 197 LYS A 199 5 3 HELIX 12 12 TYR A 210 GLY A 218 1 9 HELIX 13 13 GLY A 234 GLN A 248 1 15 HELIX 14 14 PRO A 261 ARG A 269 1 9 HELIX 15 15 THR A 290 LYS A 308 1 19 HELIX 16 16 LEU B 32 ALA B 43 1 12 HELIX 17 17 SER B 67 ALA B 75 1 9 HELIX 18 18 GLU B 86 PHE B 88 5 3 HELIX 19 19 MSE B 89 LYS B 95 1 7 HELIX 20 20 LEU B 96 ALA B 99 5 4 HELIX 21 21 ALA B 105 LEU B 107 5 3 HELIX 22 22 VAL B 110 LEU B 114 5 5 HELIX 23 23 HIS B 143 LEU B 146 5 4 HELIX 24 24 SER B 147 MSE B 166 1 20 HELIX 25 25 SER B 169 ALA B 196 1 28 HELIX 26 26 PRO B 197 LYS B 199 5 3 HELIX 27 27 TYR B 210 GLY B 218 1 9 HELIX 28 28 GLY B 234 LYS B 249 1 16 HELIX 29 29 PRO B 261 ARG B 269 1 9 HELIX 30 30 THR B 290 LYS B 308 1 19 SHEET 1 A 4 THR A 49 VAL A 51 0 SHEET 2 A 4 VAL A 28 ALA A 30 1 N ALA A 30 O GLU A 50 SHEET 3 A 4 LEU A 77 TRP A 80 1 O LEU A 77 N VAL A 29 SHEET 4 A 4 GLN A 101 THR A 103 1 O VAL A 102 N VAL A 78 SHEET 1 B 4 GLY A 223 THR A 226 0 SHEET 2 B 4 TYR A 203 HIS A 207 1 N VAL A 205 O PHE A 225 SHEET 3 B 4 CYS A 252 ALA A 255 1 O PHE A 254 N PHE A 204 SHEET 4 B 4 ARG A 274 THR A 277 1 O GLY A 276 N VAL A 253 SHEET 1 C 4 THR B 49 VAL B 51 0 SHEET 2 C 4 VAL B 28 ALA B 30 1 N VAL B 28 O GLU B 50 SHEET 3 C 4 LEU B 77 TRP B 80 1 O LEU B 77 N VAL B 29 SHEET 4 C 4 GLN B 101 THR B 103 1 O VAL B 102 N VAL B 78 SHEET 1 D 4 GLY B 223 THR B 226 0 SHEET 2 D 4 TYR B 203 HIS B 207 1 N VAL B 205 O GLY B 223 SHEET 3 D 4 CYS B 252 ALA B 255 1 O PHE B 254 N PHE B 204 SHEET 4 D 4 ARG B 274 THR B 277 1 O GLY B 276 N VAL B 253 SSBOND 1 CYS A 252 CYS A 306 1555 1555 2.09 SSBOND 2 CYS B 252 CYS B 306 1555 1555 2.07 LINK C GLU A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N GLU A 86 1555 1555 1.34 LINK C PHE A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N GLN A 90 1555 1555 1.33 LINK C LEU A 114 N MSE A 115 1555 1555 1.32 LINK C MSE A 115 N LYS A 116 1555 1555 1.33 LINK C ASN A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N HIS A 143 1555 1555 1.34 LINK C LEU A 165 N MSE A 166 1555 1555 1.32 LINK C MSE A 166 N PRO A 167 1555 1555 1.36 LINK C ARG A 274 N MSE A 275 1555 1555 1.34 LINK C MSE A 275 N GLY A 276 1555 1555 1.33 LINK C GLU B 84 N MSE B 85 1555 1555 1.32 LINK C MSE B 85 N GLU B 86 1555 1555 1.33 LINK C PHE B 88 N MSE B 89 1555 1555 1.35 LINK C MSE B 89 N GLN B 90 1555 1555 1.34 LINK C LEU B 114 N MSE B 115 1555 1555 1.33 LINK C MSE B 115 N LYS B 116 1555 1555 1.34 LINK C ASN B 141 N MSE B 142 1555 1555 1.34 LINK C MSE B 142 N HIS B 143 1555 1555 1.34 LINK C LEU B 165 N MSE B 166 1555 1555 1.32 LINK C MSE B 166 N PRO B 167 1555 1555 1.34 LINK C ARG B 274 N MSE B 275 1555 1555 1.34 LINK C MSE B 275 N GLY B 276 1555 1555 1.33 LINK NE2 HIS A 60 ZN ZN A 500 1555 1555 1.90 LINK NE2 HIS A 143 ZN ZN A 500 1555 1555 2.07 LINK NE2 HIS A 207 ZN ZN A 500 1555 1555 2.00 LINK ZN ZN A 500 O HOH A 524 1555 1555 2.27 LINK NE2 HIS B 60 ZN ZN B 501 1555 1555 2.00 LINK NE2 HIS B 143 ZN ZN B 501 1555 1555 2.07 LINK NE2 HIS B 207 ZN ZN B 501 1555 1555 2.06 LINK ZN ZN B 501 O HOH B 506 1555 1555 2.29 SITE 1 AC1 5 GLU A 59 HIS A 60 HIS A 143 HIS A 207 SITE 2 AC1 5 HOH A 524 SITE 1 AC2 5 GLU B 59 HIS B 60 HIS B 143 HIS B 207 SITE 2 AC2 5 HOH B 506 CRYST1 72.900 86.378 87.990 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013717 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011365 0.00000