data_2OIY # _entry.id 2OIY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OIY pdb_00002oiy 10.2210/pdb2oiy/pdb NDB AR0075 ? ? RCSB RCSB041193 ? ? WWPDB D_1000041193 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-04-18 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OIY _pdbx_database_status.recvd_initial_deposition_date 2007-01-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2OIJ 'HIV-1 subtype B DIS RNA duplex soaked in AuCl3' unspecified PDB 462D 'HIV-1 subtype A DIS RNA duplex (trigonal form)' unspecified PDB 1Y99 'HIV-1 subtype A DIS RNA duplex (monoclinic form)' unspecified PDB 2OJ0 'CRYSTAL STRUCTURE OF THE DUPLEX FORM OF THE HIV-1(LAI) RNA DIMERIZATION INITIATION SITE MN SOAKED' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Walter, P.' 2 'Dumas, P.' 3 # _citation.id primary _citation.title 'Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 38 _citation.page_first 5807 _citation.page_last 5816 _citation.year 2010 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20460458 _citation.pdbx_database_id_DOI 10.1093/nar/gkq344 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ennifar, E.' 1 ? primary 'Walter, P.' 2 ? primary 'Dumas, P.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'" 7417.488 2 ? ? ? 'HIV-1subtype B DIS RNA, DIMERIZATION INITIATION SITE' 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 183 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUUGCUGAAGCGCGCACGGCAAG _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAAGCGCGCACGGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 C n 1 12 G n 1 13 C n 1 14 G n 1 15 C n 1 16 A n 1 17 C n 1 18 G n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'HIV-1 GENOMIC RNA LAI ISOLATE (HIV-1 SUBTYPE B)' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 U 2 2 2 U U B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 A 9 9 9 A A B . n B 1 10 G 10 10 10 G G B . n B 1 11 C 11 11 11 C C B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 G 18 18 18 G G B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 24 2 K K A . D 2 K 1 25 3 K K A . E 3 MG 1 74 74 MG MG A . F 3 MG 1 98 98 MG MG A . G 2 K 1 24 1 K K B . H 4 HOH 1 99 6 HOH HOH A . H 4 HOH 2 100 7 HOH HOH A . H 4 HOH 3 101 8 HOH HOH A . H 4 HOH 4 102 9 HOH HOH A . H 4 HOH 5 103 13 HOH HOH A . H 4 HOH 6 104 14 HOH HOH A . H 4 HOH 7 105 15 HOH HOH A . H 4 HOH 8 106 18 HOH HOH A . H 4 HOH 9 107 19 HOH HOH A . H 4 HOH 10 108 21 HOH HOH A . H 4 HOH 11 109 22 HOH HOH A . H 4 HOH 12 110 24 HOH HOH A . H 4 HOH 13 111 25 HOH HOH A . H 4 HOH 14 112 26 HOH HOH A . H 4 HOH 15 113 28 HOH HOH A . H 4 HOH 16 114 29 HOH HOH A . H 4 HOH 17 115 30 HOH HOH A . H 4 HOH 18 116 31 HOH HOH A . H 4 HOH 19 117 32 HOH HOH A . H 4 HOH 20 118 35 HOH HOH A . H 4 HOH 21 119 36 HOH HOH A . H 4 HOH 22 120 37 HOH HOH A . H 4 HOH 23 121 41 HOH HOH A . H 4 HOH 24 122 43 HOH HOH A . H 4 HOH 25 123 44 HOH HOH A . H 4 HOH 26 124 49 HOH HOH A . H 4 HOH 27 125 50 HOH HOH A . H 4 HOH 28 126 53 HOH HOH A . H 4 HOH 29 127 55 HOH HOH A . H 4 HOH 30 128 56 HOH HOH A . H 4 HOH 31 129 57 HOH HOH A . H 4 HOH 32 130 58 HOH HOH A . H 4 HOH 33 131 60 HOH HOH A . H 4 HOH 34 132 62 HOH HOH A . H 4 HOH 35 133 64 HOH HOH A . H 4 HOH 36 134 66 HOH HOH A . H 4 HOH 37 135 67 HOH HOH A . H 4 HOH 38 136 71 HOH HOH A . H 4 HOH 39 137 75 HOH HOH A . H 4 HOH 40 138 77 HOH HOH A . H 4 HOH 41 139 78 HOH HOH A . H 4 HOH 42 140 80 HOH HOH A . H 4 HOH 43 141 82 HOH HOH A . H 4 HOH 44 142 83 HOH HOH A . H 4 HOH 45 143 84 HOH HOH A . H 4 HOH 46 144 85 HOH HOH A . H 4 HOH 47 145 87 HOH HOH A . H 4 HOH 48 146 88 HOH HOH A . H 4 HOH 49 147 90 HOH HOH A . H 4 HOH 50 148 92 HOH HOH A . H 4 HOH 51 149 94 HOH HOH A . H 4 HOH 52 150 96 HOH HOH A . H 4 HOH 53 151 97 HOH HOH A . H 4 HOH 54 152 99 HOH HOH A . H 4 HOH 55 153 100 HOH HOH A . H 4 HOH 56 154 101 HOH HOH A . H 4 HOH 57 155 102 HOH HOH A . H 4 HOH 58 156 103 HOH HOH A . H 4 HOH 59 157 105 HOH HOH A . H 4 HOH 60 158 106 HOH HOH A . H 4 HOH 61 159 107 HOH HOH A . H 4 HOH 62 160 108 HOH HOH A . H 4 HOH 63 161 112 HOH HOH A . H 4 HOH 64 162 114 HOH HOH A . H 4 HOH 65 163 115 HOH HOH A . H 4 HOH 66 164 117 HOH HOH A . H 4 HOH 67 165 118 HOH HOH A . H 4 HOH 68 166 120 HOH HOH A . H 4 HOH 69 167 122 HOH HOH A . H 4 HOH 70 168 128 HOH HOH A . H 4 HOH 71 169 129 HOH HOH A . H 4 HOH 72 170 137 HOH HOH A . H 4 HOH 73 171 141 HOH HOH A . H 4 HOH 74 172 142 HOH HOH A . H 4 HOH 75 173 147 HOH HOH A . H 4 HOH 76 174 148 HOH HOH A . H 4 HOH 77 175 149 HOH HOH A . H 4 HOH 78 176 152 HOH HOH A . H 4 HOH 79 177 155 HOH HOH A . H 4 HOH 80 178 158 HOH HOH A . H 4 HOH 81 179 159 HOH HOH A . H 4 HOH 82 180 161 HOH HOH A . H 4 HOH 83 181 163 HOH HOH A . H 4 HOH 84 182 166 HOH HOH A . H 4 HOH 85 183 169 HOH HOH A . H 4 HOH 86 184 170 HOH HOH A . H 4 HOH 87 185 171 HOH HOH A . H 4 HOH 88 186 172 HOH HOH A . H 4 HOH 89 187 174 HOH HOH A . H 4 HOH 90 188 175 HOH HOH A . H 4 HOH 91 189 176 HOH HOH A . H 4 HOH 92 190 177 HOH HOH A . H 4 HOH 93 191 180 HOH HOH A . H 4 HOH 94 192 183 HOH HOH A . H 4 HOH 95 193 184 HOH HOH A . H 4 HOH 96 194 187 HOH HOH A . I 4 HOH 1 25 4 HOH HOH B . I 4 HOH 2 26 5 HOH HOH B . I 4 HOH 3 27 10 HOH HOH B . I 4 HOH 4 28 11 HOH HOH B . I 4 HOH 5 29 12 HOH HOH B . I 4 HOH 6 30 16 HOH HOH B . I 4 HOH 7 31 17 HOH HOH B . I 4 HOH 8 32 20 HOH HOH B . I 4 HOH 9 33 23 HOH HOH B . I 4 HOH 10 34 27 HOH HOH B . I 4 HOH 11 35 33 HOH HOH B . I 4 HOH 12 36 34 HOH HOH B . I 4 HOH 13 37 38 HOH HOH B . I 4 HOH 14 38 39 HOH HOH B . I 4 HOH 15 39 40 HOH HOH B . I 4 HOH 16 40 42 HOH HOH B . I 4 HOH 17 41 45 HOH HOH B . I 4 HOH 18 42 46 HOH HOH B . I 4 HOH 19 43 47 HOH HOH B . I 4 HOH 20 44 48 HOH HOH B . I 4 HOH 21 45 51 HOH HOH B . I 4 HOH 22 46 52 HOH HOH B . I 4 HOH 23 47 54 HOH HOH B . I 4 HOH 24 48 59 HOH HOH B . I 4 HOH 25 49 61 HOH HOH B . I 4 HOH 26 50 63 HOH HOH B . I 4 HOH 27 51 65 HOH HOH B . I 4 HOH 28 52 68 HOH HOH B . I 4 HOH 29 53 69 HOH HOH B . I 4 HOH 30 54 70 HOH HOH B . I 4 HOH 31 55 72 HOH HOH B . I 4 HOH 32 56 73 HOH HOH B . I 4 HOH 33 57 76 HOH HOH B . I 4 HOH 34 58 79 HOH HOH B . I 4 HOH 35 59 81 HOH HOH B . I 4 HOH 36 60 86 HOH HOH B . I 4 HOH 37 61 89 HOH HOH B . I 4 HOH 38 62 91 HOH HOH B . I 4 HOH 39 63 93 HOH HOH B . I 4 HOH 40 64 95 HOH HOH B . I 4 HOH 41 65 104 HOH HOH B . I 4 HOH 42 66 109 HOH HOH B . I 4 HOH 43 67 110 HOH HOH B . I 4 HOH 44 68 111 HOH HOH B . I 4 HOH 45 69 113 HOH HOH B . I 4 HOH 46 70 116 HOH HOH B . I 4 HOH 47 71 119 HOH HOH B . I 4 HOH 48 72 121 HOH HOH B . I 4 HOH 49 73 123 HOH HOH B . I 4 HOH 50 74 124 HOH HOH B . I 4 HOH 51 75 125 HOH HOH B . I 4 HOH 52 76 126 HOH HOH B . I 4 HOH 53 77 127 HOH HOH B . I 4 HOH 54 78 130 HOH HOH B . I 4 HOH 55 79 131 HOH HOH B . I 4 HOH 56 80 132 HOH HOH B . I 4 HOH 57 81 133 HOH HOH B . I 4 HOH 58 82 134 HOH HOH B . I 4 HOH 59 83 135 HOH HOH B . I 4 HOH 60 84 136 HOH HOH B . I 4 HOH 61 85 138 HOH HOH B . I 4 HOH 62 86 139 HOH HOH B . I 4 HOH 63 87 140 HOH HOH B . I 4 HOH 64 88 143 HOH HOH B . I 4 HOH 65 89 144 HOH HOH B . I 4 HOH 66 90 145 HOH HOH B . I 4 HOH 67 91 146 HOH HOH B . I 4 HOH 68 92 150 HOH HOH B . I 4 HOH 69 93 151 HOH HOH B . I 4 HOH 70 94 153 HOH HOH B . I 4 HOH 71 95 154 HOH HOH B . I 4 HOH 72 96 156 HOH HOH B . I 4 HOH 73 97 157 HOH HOH B . I 4 HOH 74 98 160 HOH HOH B . I 4 HOH 75 99 162 HOH HOH B . I 4 HOH 76 100 164 HOH HOH B . I 4 HOH 77 101 165 HOH HOH B . I 4 HOH 78 102 167 HOH HOH B . I 4 HOH 79 103 168 HOH HOH B . I 4 HOH 80 104 173 HOH HOH B . I 4 HOH 81 105 178 HOH HOH B . I 4 HOH 82 106 179 HOH HOH B . I 4 HOH 83 107 181 HOH HOH B . I 4 HOH 84 108 182 HOH HOH B . I 4 HOH 85 109 185 HOH HOH B . I 4 HOH 86 110 186 HOH HOH B . I 4 HOH 87 111 188 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHARP phasing . ? 1 CNS refinement 1.0 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 2OIY _cell.length_a 43.963 _cell.length_b 47.550 _cell.length_c 57.633 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OIY _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2OIY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'MAGNESIUM CHLORIDE, CACODYLATE, POTASSIUM CHLORIDE, SPERMINE, MPD, pH 7.00, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'MAGNESIUM CHLORIDE' ? ? ? 1 2 1 CACODYLATE ? ? ? 1 3 1 'POTASSIUM CHLORIDE' ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 MPD ? ? ? 1 6 1 H2O ? ? ? 1 7 2 'MAGNESIUM CHLORIDE' ? ? ? 1 8 2 CACODYLATE ? ? ? 1 9 2 'POTASSIUM CHLORIDE' ? ? ? 1 10 2 MPD ? ? ? 1 11 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-02-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator CRYSTAL _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2OIY _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.600 _reflns.number_obs 16259 _reflns.number_all 16450 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.063 _reflns.pdbx_netI_over_sigmaI 23.8 _reflns.B_iso_Wilson_estimate 20.60 _reflns.pdbx_redundancy 9.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.212 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1090 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2OIY _refine.ls_number_reflns_obs 15606 _refine.ls_number_reflns_all 16366 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 95.2 _refine.ls_R_factor_obs 0.242 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.242 _refine.ls_R_factor_R_free 0.25 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.800 _refine.ls_number_reflns_R_free 1059 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 31.70 _refine.aniso_B[1][1] 2.57000 _refine.aniso_B[2][2] 0.28000 _refine.aniso_B[3][3] -2.85000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.41 _refine.solvent_model_param_bsol 45.84 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2OIY _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.22 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 982 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 183 _refine_hist.number_atoms_total 1170 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.30 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 8.70 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.50 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.70 _refine_ls_shell.number_reflns_R_work 2166 _refine_ls_shell.R_factor_R_work 0.32 _refine_ls_shell.percent_reflns_obs 85.90 _refine_ls_shell.R_factor_R_free 0.311 _refine_ls_shell.R_factor_R_free_error 0.025 _refine_ls_shell.percent_reflns_R_free 6.50 _refine_ls_shell.number_reflns_R_free 150 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 LUC.PARAM ION.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2OIY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2OIY _struct.title 'Crystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OIY _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HIV-1, DIS, RNA, DIMERIZATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2OIY _struct_ref.pdbx_db_accession 2OIY _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OIY A 1 ? 23 ? 2OIY 1 ? 23 ? 1 23 2 1 2OIY B 1 ? 23 ? 2OIY 1 ? 23 ? 1 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 6 O4 ? ? ? 1_555 D K . K ? ? A U 6 A K 25 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc2 metalc ? ? A G 7 O6 ? ? ? 1_555 D K . K ? ? A G 7 A K 25 1_555 ? ? ? ? ? ? ? 2.909 ? ? metalc3 metalc ? ? A C 20 O2 ? ? ? 1_555 C K . K ? ? A C 20 A K 24 1_555 ? ? ? ? ? ? ? 2.768 ? ? metalc4 metalc ? ? C K . K ? ? ? 1_555 H HOH . O ? ? A K 24 A HOH 138 1_555 ? ? ? ? ? ? ? 2.875 ? ? metalc5 metalc ? ? C K . K ? ? ? 1_555 B C 5 O2 ? ? A K 24 B C 5 1_555 ? ? ? ? ? ? ? 2.860 ? ? metalc6 metalc ? ? C K . K ? ? ? 1_555 I HOH . O ? ? A K 24 B HOH 33 1_555 ? ? ? ? ? ? ? 3.208 ? ? metalc7 metalc ? ? C K . K ? ? ? 1_555 I HOH . O ? ? A K 24 B HOH 51 1_555 ? ? ? ? ? ? ? 3.021 ? ? metalc8 metalc ? ? D K . K ? ? ? 1_555 H HOH . O ? ? A K 25 A HOH 135 1_555 ? ? ? ? ? ? ? 3.077 ? ? metalc9 metalc ? ? D K . K ? ? ? 1_555 H HOH . O ? ? A K 25 A HOH 165 1_555 ? ? ? ? ? ? ? 3.206 ? ? metalc10 metalc ? ? D K . K ? ? ? 1_555 B G 18 O6 ? ? A K 25 B G 18 1_555 ? ? ? ? ? ? ? 3.046 ? ? metalc11 metalc ? ? D K . K ? ? ? 1_555 I HOH . O ? ? A K 25 B HOH 60 1_555 ? ? ? ? ? ? ? 2.915 ? ? metalc12 metalc ? ? D K . K ? ? ? 1_555 I HOH . O ? ? A K 25 B HOH 63 1_555 ? ? ? ? ? ? ? 3.052 ? ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 74 A HOH 158 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 74 B HOH 34 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 74 B HOH 61 1_555 ? ? ? ? ? ? ? 1.937 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 74 B HOH 80 1_555 ? ? ? ? ? ? ? 1.876 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 98 A HOH 125 1_555 ? ? ? ? ? ? ? 2.614 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 98 A HOH 129 1_555 ? ? ? ? ? ? ? 1.925 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 98 A HOH 136 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 98 A HOH 146 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 98 A HOH 163 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc22 metalc ? ? H HOH . O ? ? ? 1_555 G K . K ? ? A HOH 101 B K 24 1_555 ? ? ? ? ? ? ? 2.958 ? ? metalc23 metalc ? ? B C 20 "O2'" ? ? ? 1_555 G K . K ? ? B C 20 B K 24 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc24 metalc ? ? B C 20 O2 ? ? ? 1_555 G K . K ? ? B C 20 B K 24 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc25 metalc ? ? B A 21 "O4'" ? ? ? 1_555 G K . K ? ? B A 21 B K 24 1_555 ? ? ? ? ? ? ? 2.961 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 22 N1 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 22 N6 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 21 N1 ? ? A U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 21 N6 ? ? A U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 B G 18 O6 ? ? A U 6 B G 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A U 6 O2 ? ? ? 1_555 B G 18 N1 ? ? A U 6 B G 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 11 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 11 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 11 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 14 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 14 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 14 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 18 N1 ? ? ? 1_555 B U 6 O2 ? ? A G 18 B U 6 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog41 hydrog ? ? A G 18 O6 ? ? ? 1_555 B U 6 N3 ? ? A G 18 B U 6 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog42 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 21 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 21 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 21 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 21 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 22 N1 ? ? ? 1_555 B U 2 N3 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 22 N6 ? ? ? 1_555 B U 2 O4 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 23 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 23 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 23 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A U 6 ? A U 6 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A G 7 ? A G 7 ? 1_555 74.4 ? 2 O4 ? A U 6 ? A U 6 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? H HOH . ? A HOH 135 ? 1_555 128.2 ? 3 O6 ? A G 7 ? A G 7 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? H HOH . ? A HOH 135 ? 1_555 129.5 ? 4 O4 ? A U 6 ? A U 6 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? H HOH . ? A HOH 165 ? 1_555 71.4 ? 5 O6 ? A G 7 ? A G 7 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? H HOH . ? A HOH 165 ? 1_555 137.7 ? 6 O ? H HOH . ? A HOH 135 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? H HOH . ? A HOH 165 ? 1_555 62.0 ? 7 O4 ? A U 6 ? A U 6 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? B G 18 ? B G 18 ? 1_555 77.4 ? 8 O6 ? A G 7 ? A G 7 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? B G 18 ? B G 18 ? 1_555 65.8 ? 9 O ? H HOH . ? A HOH 135 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? B G 18 ? B G 18 ? 1_555 150.5 ? 10 O ? H HOH . ? A HOH 165 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? B G 18 ? B G 18 ? 1_555 127.5 ? 11 O4 ? A U 6 ? A U 6 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 60 ? 1_555 159.3 ? 12 O6 ? A G 7 ? A G 7 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 60 ? 1_555 95.8 ? 13 O ? H HOH . ? A HOH 135 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 60 ? 1_555 72.1 ? 14 O ? H HOH . ? A HOH 165 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 60 ? 1_555 124.1 ? 15 O6 ? B G 18 ? B G 18 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 60 ? 1_555 82.0 ? 16 O4 ? A U 6 ? A U 6 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 63 ? 1_555 88.5 ? 17 O6 ? A G 7 ? A G 7 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 63 ? 1_555 78.7 ? 18 O ? H HOH . ? A HOH 135 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 63 ? 1_555 60.6 ? 19 O ? H HOH . ? A HOH 165 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 63 ? 1_555 76.3 ? 20 O6 ? B G 18 ? B G 18 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 63 ? 1_555 144.0 ? 21 O ? I HOH . ? B HOH 60 ? 1_555 K ? D K . ? A K 25 ? 1_555 O ? I HOH . ? B HOH 63 ? 1_555 107.9 ? 22 O2 ? A C 20 ? A C 20 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? H HOH . ? A HOH 138 ? 1_555 70.8 ? 23 O2 ? A C 20 ? A C 20 ? 1_555 K ? C K . ? A K 24 ? 1_555 O2 ? B C 5 ? B C 5 ? 1_555 87.1 ? 24 O ? H HOH . ? A HOH 138 ? 1_555 K ? C K . ? A K 24 ? 1_555 O2 ? B C 5 ? B C 5 ? 1_555 151.5 ? 25 O2 ? A C 20 ? A C 20 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 156.6 ? 26 O ? H HOH . ? A HOH 138 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 128.7 ? 27 O2 ? B C 5 ? B C 5 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? I HOH . ? B HOH 33 ? 1_555 77.6 ? 28 O2 ? A C 20 ? A C 20 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 107.5 ? 29 O ? H HOH . ? A HOH 138 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 78.8 ? 30 O2 ? B C 5 ? B C 5 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 91.6 ? 31 O ? I HOH . ? B HOH 33 ? 1_555 K ? C K . ? A K 24 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 90.7 ? 32 O ? H HOH . ? A HOH 158 ? 1_555 MG ? E MG . ? A MG 74 ? 1_555 O ? I HOH . ? B HOH 34 ? 1_555 105.2 ? 33 O ? H HOH . ? A HOH 158 ? 1_555 MG ? E MG . ? A MG 74 ? 1_555 O ? I HOH . ? B HOH 61 ? 1_555 171.8 ? 34 O ? I HOH . ? B HOH 34 ? 1_555 MG ? E MG . ? A MG 74 ? 1_555 O ? I HOH . ? B HOH 61 ? 1_555 75.6 ? 35 O ? H HOH . ? A HOH 158 ? 1_555 MG ? E MG . ? A MG 74 ? 1_555 O ? I HOH . ? B HOH 80 ? 1_555 89.1 ? 36 O ? I HOH . ? B HOH 34 ? 1_555 MG ? E MG . ? A MG 74 ? 1_555 O ? I HOH . ? B HOH 80 ? 1_555 87.1 ? 37 O ? I HOH . ? B HOH 61 ? 1_555 MG ? E MG . ? A MG 74 ? 1_555 O ? I HOH . ? B HOH 80 ? 1_555 82.8 ? 38 O ? H HOH . ? A HOH 125 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 129 ? 1_555 162.7 ? 39 O ? H HOH . ? A HOH 125 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 136 ? 1_555 79.2 ? 40 O ? H HOH . ? A HOH 129 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 136 ? 1_555 84.8 ? 41 O ? H HOH . ? A HOH 125 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 146 ? 1_555 81.2 ? 42 O ? H HOH . ? A HOH 129 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 146 ? 1_555 113.4 ? 43 O ? H HOH . ? A HOH 136 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 146 ? 1_555 158.4 ? 44 O ? H HOH . ? A HOH 125 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 163 ? 1_555 101.0 ? 45 O ? H HOH . ? A HOH 129 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 163 ? 1_555 74.6 ? 46 O ? H HOH . ? A HOH 136 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 163 ? 1_555 97.4 ? 47 O ? H HOH . ? A HOH 146 ? 1_555 MG ? F MG . ? A MG 98 ? 1_555 O ? H HOH . ? A HOH 163 ? 1_555 77.5 ? 48 O ? H HOH . ? A HOH 101 ? 1_555 K ? G K . ? B K 24 ? 1_555 "O2'" ? B C 20 ? B C 20 ? 1_555 155.1 ? 49 O ? H HOH . ? A HOH 101 ? 1_555 K ? G K . ? B K 24 ? 1_555 O2 ? B C 20 ? B C 20 ? 1_555 102.4 ? 50 "O2'" ? B C 20 ? B C 20 ? 1_555 K ? G K . ? B K 24 ? 1_555 O2 ? B C 20 ? B C 20 ? 1_555 80.5 ? 51 O ? H HOH . ? A HOH 101 ? 1_555 K ? G K . ? B K 24 ? 1_555 "O4'" ? B A 21 ? B A 21 ? 1_555 81.4 ? 52 "O2'" ? B C 20 ? B C 20 ? 1_555 K ? G K . ? B K 24 ? 1_555 "O4'" ? B A 21 ? B A 21 ? 1_555 73.8 ? 53 O2 ? B C 20 ? B C 20 ? 1_555 K ? G K . ? B K 24 ? 1_555 "O4'" ? B A 21 ? B A 21 ? 1_555 90.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B K 24 ? 6 'BINDING SITE FOR RESIDUE K B 24' AC2 Software A K 24 ? 7 'BINDING SITE FOR RESIDUE K A 24' AC3 Software A K 25 ? 8 'BINDING SITE FOR RESIDUE K A 25' AC4 Software A MG 74 ? 6 'BINDING SITE FOR RESIDUE MG A 74' AC5 Software A MG 98 ? 5 'BINDING SITE FOR RESIDUE MG A 98' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH H . ? HOH A 101 . ? 1_555 ? 2 AC1 6 G B 4 ? G B 4 . ? 4_573 ? 3 AC1 6 C B 20 ? C B 20 . ? 1_555 ? 4 AC1 6 A B 21 ? A B 21 . ? 1_555 ? 5 AC1 6 HOH I . ? HOH B 26 . ? 4_573 ? 6 AC1 6 HOH I . ? HOH B 59 . ? 4_573 ? 7 AC2 7 G A 19 ? G A 19 . ? 1_555 ? 8 AC2 7 C A 20 ? C A 20 . ? 1_555 ? 9 AC2 7 HOH H . ? HOH A 117 . ? 3_453 ? 10 AC2 7 HOH H . ? HOH A 138 . ? 1_555 ? 11 AC2 7 G B 4 ? G B 4 . ? 1_555 ? 12 AC2 7 C B 5 ? C B 5 . ? 1_555 ? 13 AC2 7 HOH I . ? HOH B 51 . ? 1_555 ? 14 AC3 8 C A 5 ? C A 5 . ? 1_555 ? 15 AC3 8 U A 6 ? U A 6 . ? 1_555 ? 16 AC3 8 G A 7 ? G A 7 . ? 1_555 ? 17 AC3 8 HOH H . ? HOH A 135 . ? 1_555 ? 18 AC3 8 C B 17 ? C B 17 . ? 1_555 ? 19 AC3 8 G B 18 ? G B 18 . ? 1_555 ? 20 AC3 8 HOH I . ? HOH B 60 . ? 1_555 ? 21 AC3 8 HOH I . ? HOH B 63 . ? 1_555 ? 22 AC4 6 G A 19 ? G A 19 . ? 1_555 ? 23 AC4 6 HOH H . ? HOH A 141 . ? 1_555 ? 24 AC4 6 HOH H . ? HOH A 158 . ? 1_555 ? 25 AC4 6 HOH I . ? HOH B 34 . ? 1_555 ? 26 AC4 6 HOH I . ? HOH B 61 . ? 1_555 ? 27 AC4 6 HOH I . ? HOH B 80 . ? 1_555 ? 28 AC5 5 HOH H . ? HOH A 125 . ? 1_555 ? 29 AC5 5 HOH H . ? HOH A 129 . ? 1_555 ? 30 AC5 5 HOH H . ? HOH A 136 . ? 1_555 ? 31 AC5 5 HOH H . ? HOH A 146 . ? 1_555 ? 32 AC5 5 HOH H . ? HOH A 163 . ? 1_555 ? # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 7 ? ? 0.076 'SIDE CHAIN' 2 1 A A 8 ? ? 0.058 'SIDE CHAIN' 3 1 G B 7 ? ? 0.062 'SIDE CHAIN' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 90 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 MG MG MG N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2OIY 'double helix' 2OIY 'a-form double helix' 2OIY 'mismatched base pair' 2OIY 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 23 1_555 0.033 -0.138 0.242 3.867 -18.948 2.301 1 A_C1:G23_B A 1 ? B 23 ? 19 1 1 A U 2 1_555 B A 22 1_555 0.095 -0.157 0.044 -1.845 -17.181 2.601 2 A_U2:A22_B A 2 ? B 22 ? 20 1 1 A U 3 1_555 B A 21 1_555 -0.291 -0.090 0.061 0.144 -11.235 1.904 3 A_U3:A21_B A 3 ? B 21 ? 20 1 1 A G 4 1_555 B C 20 1_555 -0.028 -0.161 0.262 0.719 -11.116 -1.306 4 A_G4:C20_B A 4 ? B 20 ? 19 1 1 A C 5 1_555 B G 19 1_555 0.260 -0.116 0.074 3.623 -16.864 -1.851 5 A_C5:G19_B A 5 ? B 19 ? 19 1 1 A U 6 1_555 B G 18 1_555 2.285 -0.578 0.081 2.703 -14.523 -3.755 6 A_U6:G18_B A 6 ? B 18 ? 28 ? 1 A G 7 1_555 B C 17 1_555 -0.236 -0.233 -0.150 11.371 0.336 1.132 7 A_G7:C17_B A 7 ? B 17 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.219 -0.180 -0.136 -5.873 -17.236 -1.073 8 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A C 11 1_555 B G 14 1_555 0.264 -0.071 0.053 0.447 -13.168 2.580 9 A_C11:G14_B A 11 ? B 14 ? 19 1 1 A G 12 1_555 B C 13 1_555 -0.162 -0.161 0.089 2.780 -5.169 -0.565 10 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 0.159 -0.086 0.009 3.566 -12.545 0.537 11 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A G 14 1_555 B C 11 1_555 -0.093 -0.143 -0.121 2.007 -10.250 0.621 12 A_G14:C11_B A 14 ? B 11 ? 19 1 1 A C 15 1_555 B G 10 1_555 0.473 -0.271 -0.008 2.921 -11.574 3.321 13 A_C15:G10_B A 15 ? B 10 ? 19 1 1 A C 17 1_555 B G 7 1_555 -0.141 -0.169 0.062 -7.759 -8.376 -0.201 14 A_C17:G7_B A 17 ? B 7 ? 19 1 1 A G 18 1_555 B U 6 1_555 -2.356 -0.557 0.195 3.448 -11.662 3.124 15 A_G18:U6_B A 18 ? B 6 ? 28 1 1 A G 19 1_555 B C 5 1_555 -0.223 -0.183 -0.006 -0.228 -17.348 2.645 16 A_G19:C5_B A 19 ? B 5 ? 19 1 1 A C 20 1_555 B G 4 1_555 0.249 -0.069 -0.058 2.243 -14.393 3.536 17 A_C20:G4_B A 20 ? B 4 ? 19 1 1 A A 21 1_555 B U 3 1_555 0.149 -0.242 0.197 -5.204 -16.316 4.532 18 A_A21:U3_B A 21 ? B 3 ? 20 1 1 A A 22 1_555 B U 2 1_555 0.280 -0.340 0.057 -1.294 -14.271 0.245 19 A_A22:U2_B A 22 ? B 2 ? 20 1 1 A G 23 1_555 B C 1 1_555 0.519 -0.030 -0.175 -8.675 -21.322 0.387 20 A_G23:C1_B A 23 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 23 1_555 A U 2 1_555 B A 22 1_555 -0.399 -1.179 3.339 -1.478 9.822 34.791 -3.255 0.439 2.924 16.026 2.411 36.139 1 AA_C1U2:A22G23_BB A 1 ? B 23 ? A 2 ? B 22 ? 1 A U 2 1_555 B A 22 1_555 A U 3 1_555 B A 21 1_555 0.143 -0.960 3.138 0.370 9.000 31.679 -3.111 -0.194 2.770 16.084 -0.662 32.903 2 AA_U2U3:A21A22_BB A 2 ? B 22 ? A 3 ? B 21 ? 1 A U 3 1_555 B A 21 1_555 A G 4 1_555 B C 20 1_555 0.268 -1.546 3.023 -1.745 15.015 31.523 -4.452 -0.664 2.078 25.860 3.006 34.877 3 AA_U3G4:C20A21_BB A 3 ? B 21 ? A 4 ? B 20 ? 1 A G 4 1_555 B C 20 1_555 A C 5 1_555 B G 19 1_555 -0.562 -1.485 3.194 -0.029 6.597 33.344 -3.527 0.958 2.857 11.358 0.050 33.972 4 AA_G4C5:G19C20_BB A 4 ? B 20 ? A 5 ? B 19 ? 1 A C 5 1_555 B G 19 1_555 A U 6 1_555 B G 18 1_555 0.455 -1.443 3.289 2.642 9.345 41.335 -2.911 -0.369 2.932 13.023 -3.682 42.412 5 AA_C5U6:G18G19_BB A 5 ? B 19 ? A 6 ? B 18 ? 1 A U 6 1_555 B G 18 1_555 A G 7 1_555 B C 17 1_555 0.372 -2.017 2.837 3.827 16.375 14.883 -8.915 -0.085 0.488 47.496 -11.101 22.421 6 AA_U6G7:C17G18_BB A 6 ? B 18 ? A 7 ? B 17 ? 1 A G 7 1_555 B C 17 1_555 A G 10 1_555 B C 15 1_555 -1.813 -2.321 6.705 -11.599 14.212 72.993 -2.797 0.764 6.417 11.767 9.603 74.951 7 AA_G7G10:C15C17_BB A 7 ? B 17 ? A 10 ? B 15 ? 1 A G 10 1_555 B C 15 1_555 A C 11 1_555 B G 14 1_555 0.548 -1.181 3.020 -0.191 4.382 33.447 -2.677 -0.972 2.844 7.574 0.330 33.725 8 AA_G10C11:G14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A C 11 1_555 B G 14 1_555 A G 12 1_555 B C 13 1_555 -0.858 -2.245 3.152 -1.246 9.624 26.530 -6.517 1.511 2.252 20.135 2.608 28.220 9 AA_C11G12:C13G14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 0.717 -2.074 3.260 2.151 2.909 31.034 -4.389 -0.934 3.099 5.414 -4.004 31.239 10 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A G 14 1_555 B C 11 1_555 -0.654 -1.823 3.252 -0.475 11.254 27.713 -5.620 1.180 2.359 22.360 0.943 29.873 11 AA_C13G14:C11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A G 14 1_555 B C 11 1_555 A C 15 1_555 B G 10 1_555 0.432 -1.275 3.222 -0.561 5.113 35.368 -2.784 -0.782 3.008 8.361 0.917 35.728 12 AA_G14C15:G10C11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 A C 15 1_555 B G 10 1_555 A C 17 1_555 B G 7 1_555 1.509 -2.568 6.304 9.530 17.672 73.536 -3.085 -0.690 5.788 14.502 -7.820 75.853 13 AA_C15C17:G7G10_BB A 15 ? B 10 ? A 17 ? B 7 ? 1 A C 17 1_555 B G 7 1_555 A G 18 1_555 B U 6 1_555 0.550 -2.147 2.737 -3.188 13.607 16.874 -8.822 -2.190 0.711 38.823 9.096 21.877 14 AA_C17G18:U6G7_BB A 17 ? B 7 ? A 18 ? B 6 ? 1 A G 18 1_555 B U 6 1_555 A G 19 1_555 B C 5 1_555 -0.713 -1.393 3.359 -1.700 7.276 40.609 -2.756 0.829 3.101 10.377 2.425 41.263 15 AA_G18G19:C5U6_BB A 18 ? B 6 ? A 19 ? B 5 ? 1 A G 19 1_555 B C 5 1_555 A C 20 1_555 B G 4 1_555 -0.125 -0.987 3.126 -0.589 9.584 32.861 -3.064 0.128 2.740 16.507 1.014 34.198 16 AA_G19C20:G4C5_BB A 19 ? B 5 ? A 20 ? B 4 ? 1 A C 20 1_555 B G 4 1_555 A A 21 1_555 B U 3 1_555 0.676 -1.433 3.205 1.611 16.561 33.909 -4.136 -0.860 2.312 26.508 -2.579 37.663 17 AA_C20A21:U3G4_BB A 20 ? B 4 ? A 21 ? B 3 ? 1 A A 21 1_555 B U 3 1_555 A A 22 1_555 B U 2 1_555 -0.544 -0.860 3.111 1.601 6.024 33.341 -2.370 1.170 2.888 10.386 -2.761 33.902 18 AA_A21A22:U2U3_BB A 21 ? B 3 ? A 22 ? B 2 ? 1 A A 22 1_555 B U 2 1_555 A G 23 1_555 B C 1 1_555 0.274 -1.520 3.441 4.838 11.477 34.559 -3.970 0.219 2.823 18.587 -7.836 36.670 19 AA_A22G23:C1U2_BB A 22 ? B 2 ? A 23 ? B 1 ? # _atom_sites.entry_id 2OIY _atom_sites.fract_transf_matrix[1][1] 0.022746 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021030 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017351 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P # loop_