HEADER INTEGRAL MEMBRANE PROTEIN PORIN 28-FEB-95 2OMF TITLE OMPF PORIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PORIN OUTER MEMBRANE PROTEIN F; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MATRIX PORIN, OMPF PORIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12 KEYWDS PORIN, MEMBRANE PROTEIN, INTEGRAL MEMBRANE PROTEIN PORIN EXPDTA X-RAY DIFFRACTION AUTHOR S.W.COWAN REVDAT 4 21-FEB-24 2OMF 1 REMARK REVDAT 3 13-JUL-11 2OMF 1 VERSN REVDAT 2 24-FEB-09 2OMF 1 VERSN REVDAT 1 07-DEC-95 2OMF 0 SPRSDE 07-DEC-95 2OMF 1OMF JRNL AUTH S.W.COWAN JRNL TITL THE REFINED STRUCTURE OF OMPF PORIN FROM E.COLI AT 2.4 JRNL TITL 2 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.COWAN,T.SCHIRMER,G.RUMMEL,M.STEIERT,R.GHOSH,R.A.PAUPTIT, REMARK 1 AUTH 2 J.N.JANSONIUS,J.P.ROSENBUSCH REMARK 1 TITL CRYSTAL STRUCTURES EXPLAIN FUNCTIONAL PROPERTIES OF TWO REMARK 1 TITL 2 E.COLI PORINS REMARK 1 REF NATURE V. 358 727 1992 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.A.PAUPTIT,H.ZHANG,G.RUMMEL,T.SCHIRMER,J.N.JANSONIUS, REMARK 1 AUTH 2 J.P.ROSENBUSCH REMARK 1 TITL TRIGONAL CRYSTALS OF PORIN FROM ESCHERICHIA COLI REMARK 1 REF J.MOL.BIOL. V. 218 505 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2627 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.687 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.01 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.212 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ASN 27 COULD NOT BE MODELED DUE TO WEAK OR NONEXISTENT REMARK 3 ELECTRON DENSITY AND IS INCLUDED IN THE MODEL IN AN REMARK 3 ARBITRARY CONFORMATION (WITH OCCUPANCIES SET TO ZERO). REMARK 3 REMARK 3 THE HET RESIDUES 341 - 354 HAVE NOT BEEN IDENTIFIED REMARK 3 UNAMBIGUOUSLY AND HAVE BEEN MODELED AS FRAGMENTS OF THE REMARK 3 DETERGENT OCTYL-TETRAOXYETHYLENE (C8E). REMARK 4 REMARK 4 2OMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-91 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16989 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SYMMETRY REMARK 300 THE CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS PRESENTED REMARK 300 BELOW GENERATE THE SUBUNITS OF THE POLYMERIC MOLECULE. REMARK 300 REMARK 300 APPLIED TO RESIDUES: 1 .. 340 REMARK 300 REMARK 300 1ST SUBUNIT TO 2ND SUBUNIT IN TRIMER REMARK 300 SYMMETRY1 1 -0.500000 0.865979 0.000000 -59.25000 REMARK 300 SYMMETRY2 1 -0.866071 -0.500000 0.000000 102.63000 REMARK 300 SYMMETRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 300 REMARK 300 APPLIED TO RESIDUES: 1 .. 340 REMARK 300 REMARK 300 1ST SUBUNIT TO THIRD SUBUNIT IN TRIMER REMARK 300 SYMMETRY1 2 -0.500000 -0.865979 0.000000 59.25000 REMARK 300 SYMMETRY2 2 0.866071 -0.500000 0.000000 102.63000 REMARK 300 SYMMETRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 59.25000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 102.62401 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -59.25000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 102.62401 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASN A 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 284 O HOH A 471 1.94 REMARK 500 OE1 GLN A 262 NH1 ARG A 270 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 258 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 93.67 -165.53 REMARK 500 ASN A 52 -178.21 178.84 REMARK 500 ALA A 84 98.15 -165.03 REMARK 500 ALA A 91 -129.73 30.87 REMARK 500 GLU A 117 -40.05 -131.06 REMARK 500 PHE A 118 -148.76 -100.60 REMARK 500 PHE A 128 -121.37 58.80 REMARK 500 PHE A 144 71.78 35.01 REMARK 500 GLU A 183 75.24 47.04 REMARK 500 ALA A 222 158.31 179.43 REMARK 500 ASN A 224 -3.96 73.92 REMARK 500 GLU A 284 104.06 -58.60 REMARK 500 ASN A 293 108.11 -170.81 REMARK 500 ASN A 304 -163.31 -168.47 REMARK 500 SER A 320 -19.46 -48.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 341 REMARK 610 C8E A 342 REMARK 610 C8E A 343 REMARK 610 C8E A 344 REMARK 610 C8E A 345 REMARK 610 C8E A 346 REMARK 610 C8E A 347 REMARK 610 C8E A 348 REMARK 610 C8E A 349 REMARK 610 C8E A 350 REMARK 610 C8E A 353 REMARK 610 C8E A 354 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 349 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 354 DBREF 2OMF A 1 340 UNP P02931 OMPF_ECOLI 23 362 SEQRES 1 A 340 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS VAL ASP LEU SEQRES 2 A 340 TYR GLY LYS ALA VAL GLY LEU HIS TYR PHE SER LYS GLY SEQRES 3 A 340 ASN GLY GLU ASN SER TYR GLY GLY ASN GLY ASP MET THR SEQRES 4 A 340 TYR ALA ARG LEU GLY PHE LYS GLY GLU THR GLN ILE ASN SEQRES 5 A 340 SER ASP LEU THR GLY TYR GLY GLN TRP GLU TYR ASN PHE SEQRES 6 A 340 GLN GLY ASN ASN SER GLU GLY ALA ASP ALA GLN THR GLY SEQRES 7 A 340 ASN LYS THR ARG LEU ALA PHE ALA GLY LEU LYS TYR ALA SEQRES 8 A 340 ASP VAL GLY SER PHE ASP TYR GLY ARG ASN TYR GLY VAL SEQRES 9 A 340 VAL TYR ASP ALA LEU GLY TYR THR ASP MET LEU PRO GLU SEQRES 10 A 340 PHE GLY GLY ASP THR ALA TYR SER ASP ASP PHE PHE VAL SEQRES 11 A 340 GLY ARG VAL GLY GLY VAL ALA THR TYR ARG ASN SER ASN SEQRES 12 A 340 PHE PHE GLY LEU VAL ASP GLY LEU ASN PHE ALA VAL GLN SEQRES 13 A 340 TYR LEU GLY LYS ASN GLU ARG ASP THR ALA ARG ARG SER SEQRES 14 A 340 ASN GLY ASP GLY VAL GLY GLY SER ILE SER TYR GLU TYR SEQRES 15 A 340 GLU GLY PHE GLY ILE VAL GLY ALA TYR GLY ALA ALA ASP SEQRES 16 A 340 ARG THR ASN LEU GLN GLU ALA GLN PRO LEU GLY ASN GLY SEQRES 17 A 340 LYS LYS ALA GLU GLN TRP ALA THR GLY LEU LYS TYR ASP SEQRES 18 A 340 ALA ASN ASN ILE TYR LEU ALA ALA ASN TYR GLY GLU THR SEQRES 19 A 340 ARG ASN ALA THR PRO ILE THR ASN LYS PHE THR ASN THR SEQRES 20 A 340 SER GLY PHE ALA ASN LYS THR GLN ASP VAL LEU LEU VAL SEQRES 21 A 340 ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SER ILE SEQRES 22 A 340 ALA TYR THR LYS SER LYS ALA LYS ASP VAL GLU GLY ILE SEQRES 23 A 340 GLY ASP VAL ASP LEU VAL ASN TYR PHE GLU VAL GLY ALA SEQRES 24 A 340 THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL ASP SEQRES 25 A 340 TYR ILE ILE ASN GLN ILE ASP SER ASP ASN LYS LEU GLY SEQRES 26 A 340 VAL GLY SER ASP ASP THR VAL ALA VAL GLY ILE VAL TYR SEQRES 27 A 340 GLN PHE HET C8E A 341 12 HET C8E A 342 7 HET C8E A 343 7 HET C8E A 344 9 HET C8E A 345 6 HET C8E A 346 6 HET C8E A 347 4 HET C8E A 348 3 HET C8E A 349 6 HET C8E A 350 4 HET C8E A 353 4 HET C8E A 354 4 HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE FORMUL 2 C8E 12(C16 H34 O5) FORMUL 14 HOH *128(H2 O) HELIX 1 1 VAL A 104 THR A 112 5 9 HELIX 2 2 ASN A 143 GLY A 146 1 4 HELIX 3 3 ASN A 198 GLU A 201 1 4 SHEET 1 A17 TYR A 40 THR A 49 0 SHEET 2 A17 ASN A 9 PHE A 23 -1 N VAL A 18 O TYR A 40 SHEET 3 A17 THR A 331 PHE A 340 -1 N PHE A 340 O GLY A 15 SHEET 4 A17 MET A 307 ASN A 316 -1 N ILE A 314 O THR A 331 SHEET 5 A17 VAL A 289 TYR A 302 -1 N TYR A 301 O THR A 309 SHEET 6 A17 LEU A 269 LYS A 281 -1 N ALA A 280 O VAL A 289 SHEET 7 A17 LYS A 253 GLN A 264 -1 N TYR A 263 O PRO A 271 SHEET 8 A17 ILE A 225 ARG A 235 -1 N THR A 234 O THR A 254 SHEET 9 A17 LYS A 210 ALA A 222 -1 N ALA A 222 O ILE A 225 SHEET 10 A17 PHE A 185 ASP A 195 -1 N ALA A 194 O ALA A 211 SHEET 11 A17 GLY A 173 TYR A 182 -1 N TYR A 182 O PHE A 185 SHEET 12 A17 LEU A 151 LEU A 158 -1 N LEU A 158 O GLY A 173 SHEET 13 A17 VAL A 136 ASN A 141 -1 N ASN A 141 O PHE A 153 SHEET 14 A17 GLY A 94 ARG A 100 -1 N GLY A 99 O VAL A 136 SHEET 15 A17 LYS A 80 TYR A 90 -1 N TYR A 90 O GLY A 94 SHEET 16 A17 LEU A 55 GLN A 66 -1 N ASN A 64 O LYS A 80 SHEET 17 A17 TYR A 40 GLN A 50 -1 N THR A 49 O GLY A 57 SHEET 1 B 2 PRO A 239 ASN A 242 0 SHEET 2 B 2 THR A 247 PHE A 250 -1 N GLY A 249 O ILE A 240 SHEET 1 C 2 GLU A 2 LYS A 6 0 SHEET 2 C 2 ASN A 9 ASP A 12 -1 N VAL A 11 O ILE A 3 SITE 1 AC1 3 TYR A 157 LEU A 158 GLY A 173 SITE 1 AC2 1 PHE A 267 SITE 1 AC3 1 TYR A 90 SITE 1 AC4 5 LEU A 147 VAL A 148 ILE A 178 TYR A 191 SITE 2 AC4 5 C8E A 349 SITE 1 AC5 2 TRP A 214 C8E A 346 SITE 1 AC6 1 TYR A 263 SITE 1 AC7 1 ILE A 273 SITE 1 AC8 1 VAL A 297 CRYST1 118.500 118.500 52.700 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008439 0.004872 0.000000 0.00000 SCALE2 0.000000 0.009744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018975 0.00000