HEADER TRANSCRIPTION,SIGNALING PROTEIN 01-FEB-07 2OQR TITLE THE STRUCTURE OF THE RESPONSE REGULATOR REGX3 FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSORY TRANSDUCTION PROTEIN REGX3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: REGX3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS RESPONSE REGULATOR, WINGED-HELIX-TURN-HELIX, DNA-BINDING, 3D DOMAIN KEYWDS 2 SWAPPING, REGX3, TWO COMPONENT SYSTEM, TRANSCRIPTION, SIGNALING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KING-SCOTT REVDAT 7 27-DEC-23 2OQR 1 REMARK SEQADV SHEET REVDAT 6 18-OCT-17 2OQR 1 REMARK REVDAT 5 13-JUL-11 2OQR 1 VERSN REVDAT 4 24-FEB-09 2OQR 1 VERSN REVDAT 3 08-JAN-08 2OQR 1 JRNL REVDAT 2 30-OCT-07 2OQR 1 JRNL REVDAT 1 16-OCT-07 2OQR 0 JRNL AUTH J.KING-SCOTT,E.NOWAK,E.MYLONAS,S.PANJIKAR,M.ROESSLE, JRNL AUTH 2 D.I.SVERGUN,P.A.TUCKER JRNL TITL THE STRUCTURE OF A FULL-LENGTH RESPONSE REGULATOR FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS IN A STABILIZED THREE-DIMENSIONAL JRNL TITL 3 DOMAIN-SWAPPED, ACTIVATED STATE. JRNL REF J.BIOL.CHEM. V. 282 37717 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17942407 JRNL DOI 10.1074/JBC.M705081200 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1188 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1797 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1216 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2402 ; 1.548 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2958 ; 1.069 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ;10.934 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;37.649 ;23.117 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 316 ;17.145 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.926 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1975 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 348 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 358 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1268 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 864 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1014 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 127 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.171 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.299 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.265 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 3 ; 0.354 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1175 ; 1.000 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 461 ; 0.174 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1820 ; 1.557 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 678 ; 4.168 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 581 ; 6.355 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3320 -45.4840 5.2280 REMARK 3 T TENSOR REMARK 3 T11: -0.1574 T22: -0.1582 REMARK 3 T33: -0.2214 T12: -0.0158 REMARK 3 T13: -0.0080 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.1180 L22: 2.3943 REMARK 3 L33: 1.5414 L12: 1.8843 REMARK 3 L13: 0.0215 L23: -0.4309 REMARK 3 S TENSOR REMARK 3 S11: 0.1184 S12: -0.2230 S13: -0.2580 REMARK 3 S21: 0.1870 S22: -0.1115 S23: -0.2729 REMARK 3 S31: 0.1384 S32: 0.0244 S33: -0.0069 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 39.4320 -13.8110 17.4470 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: -0.1771 REMARK 3 T33: -0.2104 T12: -0.0405 REMARK 3 T13: 0.1045 T23: 0.0996 REMARK 3 L TENSOR REMARK 3 L11: 2.7184 L22: 4.4049 REMARK 3 L33: 7.9870 L12: -1.3853 REMARK 3 L13: 1.7207 L23: -0.6038 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: -0.5366 S13: -0.3085 REMARK 3 S21: 0.5978 S22: 0.2083 S23: 0.6891 REMARK 3 S31: -0.2211 S32: -0.3437 S33: -0.1210 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6890 -2.3810 10.4800 REMARK 3 T TENSOR REMARK 3 T11: -0.0386 T22: -0.2032 REMARK 3 T33: -0.0878 T12: 0.0066 REMARK 3 T13: 0.1205 T23: 0.0778 REMARK 3 L TENSOR REMARK 3 L11: 2.4363 L22: 5.8518 REMARK 3 L33: 3.6483 L12: -0.8496 REMARK 3 L13: -0.0533 L23: -0.6006 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: -0.2071 S13: 0.0110 REMARK 3 S21: 0.6582 S22: 0.2558 S23: 0.9124 REMARK 3 S31: -0.2609 S32: -0.2897 S33: -0.1910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.813 REMARK 200 MONOCHROMATOR : SI [111], HORIZONTALLY FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 19.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : 0.66400 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 2-4% PEG 4000, REMARK 280 0.1 M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.17550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.17550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.17550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.17550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.17550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.17550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.17550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.17550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL DIMER IS GENERATED FROM THE MONOMER IN THE REMARK 300 ASYMMETRIC UNIT BY THE OPERATION: -X+1/2, Y+1/2, -Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 GLY A 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 549 O HOH A 550 1.88 REMARK 500 O HOH A 463 O HOH A 464 2.16 REMARK 500 O HOH A 457 O HOH A 458 2.17 REMARK 500 O HOH A 463 O HOH A 465 2.17 REMARK 500 O HOH A 421 O HOH A 422 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 141 LA LA A 304 8556 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 86 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 102 130.78 -30.37 REMARK 500 ASN A 148 -73.97 68.35 REMARK 500 ILE A 152 -155.14 -53.19 REMARK 500 ALA A 210 -51.10 -165.61 REMARK 500 LEU A 221 -70.11 -123.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 101 PRO A 102 -50.25 REMARK 500 THR A 153 LEU A 154 146.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 THE BIOLOGICAL MOLECULE IS A 3D-DOMAIN SWAPPED DIMER. REMARK 700 IN THIS DIMER THE BETA-SHEET A IS IN FACT 5-STRANDED REMARK 700 WITH THE FIFTH STRAND COMING FROM THE SECOND MOLECULE. REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 THE BETA-SHEET B IS IN FACT AN ANTI-PARALLEL 4-STRANDED REMARK 700 BETA-SHEET. IN ORDER TO REPRESENT THIS FEATURE S4 REMARK 700 HAS BEEN DEFINED BELOW. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 401 DBREF 2OQR A 2 227 UNP Q11156 REGX3_MYCTU 2 227 SEQADV 2OQR GLY A -2 UNP Q11156 EXPRESSION TAG SEQADV 2OQR ALA A -1 UNP Q11156 EXPRESSION TAG SEQADV 2OQR MET A 0 UNP Q11156 EXPRESSION TAG SEQADV 2OQR ALA A 1 UNP Q11156 EXPRESSION TAG SEQRES 1 A 230 GLY ALA MET ALA THR SER VAL LEU ILE VAL GLU ASP GLU SEQRES 2 A 230 GLU SER LEU ALA ASP PRO LEU ALA PHE LEU LEU ARG LYS SEQRES 3 A 230 GLU GLY PHE GLU ALA THR VAL VAL THR ASP GLY PRO ALA SEQRES 4 A 230 ALA LEU ALA GLU PHE ASP ARG ALA GLY ALA ASP ILE VAL SEQRES 5 A 230 LEU LEU ASP LEU MET LEU PRO GLY MET SER GLY THR ASP SEQRES 6 A 230 VAL CYS LYS GLN LEU ARG ALA ARG SER SER VAL PRO VAL SEQRES 7 A 230 ILE MET VAL THR ALA ARG ASP SER GLU ILE ASP LYS VAL SEQRES 8 A 230 VAL GLY LEU GLU LEU GLY ALA ASP ASP TYR VAL THR LYS SEQRES 9 A 230 PRO TYR SER ALA ARG GLU LEU ILE ALA ARG ILE ARG ALA SEQRES 10 A 230 VAL LEU ARG ARG GLY GLY ASP ASP ASP SER GLU MET SER SEQRES 11 A 230 ASP GLY VAL LEU GLU SER GLY PRO VAL ARG MET ASP VAL SEQRES 12 A 230 GLU ARG HIS VAL VAL SER VAL ASN GLY ASP THR ILE THR SEQRES 13 A 230 LEU PRO LEU LYS GLU PHE ASP LEU LEU GLU TYR LEU MET SEQRES 14 A 230 ARG ASN SER GLY ARG VAL LEU THR ARG GLY GLN LEU ILE SEQRES 15 A 230 ASP ARG VAL TRP GLY ALA ASP TYR VAL GLY ASP THR LYS SEQRES 16 A 230 THR LEU ASP VAL HIS VAL LYS ARG LEU ARG SER LYS ILE SEQRES 17 A 230 GLU ALA ASP PRO ALA ASN PRO VAL HIS LEU VAL THR VAL SEQRES 18 A 230 ARG GLY LEU GLY TYR LYS LEU GLU GLY HET ACT A 228 4 HET ACT A 229 4 HET LA A 301 1 HET LA A 302 1 HET LA A 303 1 HET LA A 304 1 HET LA A 305 1 HET BME A 401 4 HETNAM ACT ACETATE ION HETNAM LA LANTHANUM (III) ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 LA 5(LA 3+) FORMUL 9 BME C2 H6 O S FORMUL 10 HOH *163(H2 O) HELIX 1 1 GLU A 10 GLU A 24 1 15 HELIX 2 2 ASP A 33 GLY A 45 1 13 HELIX 3 3 SER A 59 SER A 71 1 13 HELIX 4 4 ARG A 81 GLY A 94 1 14 HELIX 5 5 SER A 104 ARG A 117 1 14 HELIX 6 6 PRO A 155 ASN A 168 1 14 HELIX 7 7 ARG A 175 TRP A 183 1 9 HELIX 8 8 GLY A 189 GLU A 206 1 18 SHEET 1 A 4 GLU A 27 VAL A 31 0 SHEET 2 A 4 SER A 3 VAL A 7 1 N ILE A 6 O THR A 29 SHEET 3 A 4 ILE A 48 ASP A 52 1 O LEU A 50 N VAL A 7 SHEET 4 A 4 VAL A 75 THR A 79 1 O VAL A 75 N VAL A 49 SHEET 1 B 4 LEU A 131 SER A 133 0 SHEET 2 B 4 VAL A 136 ASP A 139 -1 O MET A 138 N LEU A 131 SHEET 3 B 4 VAL A 144 VAL A 147 -1 O VAL A 144 N ASP A 139 SHEET 4 B 4 GLY A 149 THR A 151 -1 N GLY A 149 N THR A 151 SHEET 1 C 3 LEU A 173 THR A 174 0 SHEET 2 C 3 GLY A 222 LEU A 225 -1 O TYR A 223 N LEU A 173 SHEET 3 C 3 LEU A 215 VAL A 218 -1 N VAL A 218 O GLY A 222 SITE 1 AC1 4 MET A 77 ARG A 111 VAL A 115 HOH A 459 SITE 1 AC2 3 TYR A 164 HOH A 531 HOH A 537 SITE 1 AC3 8 ASP A 86 ASP A 97 TYR A 98 HOH A 460 SITE 2 AC3 8 HOH A 462 HOH A 463 HOH A 465 HOH A 466 SITE 1 AC4 8 GLU A 24 ASP A 180 ASP A 186 HOH A 548 SITE 2 AC4 8 HOH A 549 HOH A 550 HOH A 551 HOH A 552 SITE 1 AC5 8 GLU A 11 ASP A 15 ASP A 122 ASP A 123 SITE 2 AC5 8 ASP A 128 HOH A 432 HOH A 433 HOH A 439 SITE 1 AC6 8 GLU A 11 ASP A 121 ASP A 122 ASP A 123 SITE 2 AC6 8 GLU A 141 HOH A 434 HOH A 435 HOH A 509 SITE 1 AC7 7 ASP A 9 ASP A 52 MET A 54 GLU A 84 SITE 2 AC7 7 HOH A 420 HOH A 421 HOH A 422 SITE 1 AC8 3 TYR A 103 HOH A 423 HOH A 471 CRYST1 124.351 124.351 44.824 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008042 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022309 0.00000