data_2OXM # _entry.id 2OXM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OXM pdb_00002oxm 10.2210/pdb2oxm/pdb NDB PD0973 ? ? RCSB RCSB041710 ? ? WWPDB D_1000041710 ? ? # _pdbx_database_status.entry_id 2OXM _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-02-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bianchet, M.A.' 1 'Krosky, D.J.' 2 'Stivers, J.T.' 3 'Amzel, L.M.' 4 # _citation.id primary _citation.title 'Enzymatic capture of an extrahelical thymine in the search for uracil in DNA.' _citation.journal_abbrev Nature _citation.journal_volume 449 _citation.page_first 433 _citation.page_last 437 _citation.year 2007 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17704764 _citation.pdbx_database_id_DOI 10.1038/nature06131 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parker, J.B.' 1 ? primary 'Bianchet, M.A.' 2 ? primary 'Krosky, D.J.' 3 ? primary 'Friedman, J.I.' 4 ? primary 'Amzel, L.M.' 5 ? primary 'Stivers, J.T.' 6 ? # _cell.length_a 48.467 _cell.length_b 65.567 _cell.length_c 98.472 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2OXM _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 2OXM _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*TP*TP*AP*TP*CP*TP*T)-3') ; 2711.794 1 3.2.2.- ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*AP*GP*AP*TP*(4MF)P*AP*CP*A)-3') ; 3066.118 1 ? ? ? ? 3 polymer man 'Uracil-DNA glycosylase' 25544.137 1 ? ? ? ? 4 water nat water 18.015 107 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name UDG # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DT)(DA)(DT)(DC)(DT)(DT)' TGTTATCTT B ? 2 polydeoxyribonucleotide no yes '(DA)(DA)(DA)(DG)(DA)(DT)(4MF)(DA)(DC)(DA)' AAAGATNACA C ? 3 'polypeptide(L)' no no ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DT n 1 9 DT n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 4MF n 2 8 DA n 2 9 DC n 2 10 DA n 3 1 MET n 3 2 GLU n 3 3 PHE n 3 4 PHE n 3 5 GLY n 3 6 GLU n 3 7 SER n 3 8 TRP n 3 9 LYS n 3 10 LYS n 3 11 HIS n 3 12 LEU n 3 13 SER n 3 14 GLY n 3 15 GLU n 3 16 PHE n 3 17 GLY n 3 18 LYS n 3 19 PRO n 3 20 TYR n 3 21 PHE n 3 22 ILE n 3 23 LYS n 3 24 LEU n 3 25 MET n 3 26 GLY n 3 27 PHE n 3 28 VAL n 3 29 ALA n 3 30 GLU n 3 31 GLU n 3 32 ARG n 3 33 LYS n 3 34 HIS n 3 35 TYR n 3 36 THR n 3 37 VAL n 3 38 TYR n 3 39 PRO n 3 40 PRO n 3 41 PRO n 3 42 HIS n 3 43 GLN n 3 44 VAL n 3 45 PHE n 3 46 THR n 3 47 TRP n 3 48 THR n 3 49 GLN n 3 50 MET n 3 51 CYS n 3 52 ASP n 3 53 ILE n 3 54 LYS n 3 55 ASP n 3 56 VAL n 3 57 LYS n 3 58 VAL n 3 59 VAL n 3 60 ILE n 3 61 LEU n 3 62 GLY n 3 63 GLN n 3 64 ASP n 3 65 PRO n 3 66 TYR n 3 67 HIS n 3 68 GLY n 3 69 PRO n 3 70 ASN n 3 71 GLN n 3 72 ALA n 3 73 HIS n 3 74 GLY n 3 75 LEU n 3 76 CYS n 3 77 PHE n 3 78 SER n 3 79 VAL n 3 80 GLN n 3 81 ARG n 3 82 PRO n 3 83 VAL n 3 84 PRO n 3 85 PRO n 3 86 PRO n 3 87 PRO n 3 88 SER n 3 89 LEU n 3 90 GLU n 3 91 ASN n 3 92 ILE n 3 93 TYR n 3 94 LYS n 3 95 GLU n 3 96 LEU n 3 97 SER n 3 98 THR n 3 99 ASP n 3 100 ILE n 3 101 GLU n 3 102 ASP n 3 103 PHE n 3 104 VAL n 3 105 HIS n 3 106 PRO n 3 107 GLY n 3 108 HIS n 3 109 GLY n 3 110 ASP n 3 111 LEU n 3 112 SER n 3 113 GLY n 3 114 TRP n 3 115 ALA n 3 116 LYS n 3 117 GLN n 3 118 GLY n 3 119 VAL n 3 120 LEU n 3 121 LEU n 3 122 LEU n 3 123 ASN n 3 124 ALA n 3 125 VAL n 3 126 LEU n 3 127 THR n 3 128 VAL n 3 129 ARG n 3 130 ALA n 3 131 HIS n 3 132 GLN n 3 133 ALA n 3 134 ASN n 3 135 SER n 3 136 HIS n 3 137 LYS n 3 138 GLU n 3 139 ARG n 3 140 GLY n 3 141 TRP n 3 142 GLU n 3 143 GLN n 3 144 PHE n 3 145 THR n 3 146 ASP n 3 147 ALA n 3 148 VAL n 3 149 VAL n 3 150 SER n 3 151 TRP n 3 152 LEU n 3 153 ASN n 3 154 GLN n 3 155 ASN n 3 156 SER n 3 157 ASN n 3 158 GLY n 3 159 LEU n 3 160 VAL n 3 161 PHE n 3 162 LEU n 3 163 LEU n 3 164 TRP n 3 165 GLY n 3 166 SER n 3 167 TYR n 3 168 ALA n 3 169 GLN n 3 170 LYS n 3 171 LYS n 3 172 GLY n 3 173 SER n 3 174 ALA n 3 175 ILE n 3 176 ASP n 3 177 ARG n 3 178 LYS n 3 179 ARG n 3 180 HIS n 3 181 HIS n 3 182 VAL n 3 183 LEU n 3 184 GLN n 3 185 THR n 3 186 ALA n 3 187 HIS n 3 188 PRO n 3 189 SER n 3 190 PRO n 3 191 LEU n 3 192 SER n 3 193 VAL n 3 194 TYR n 3 195 ARG n 3 196 GLY n 3 197 PHE n 3 198 PHE n 3 199 GLY n 3 200 CYS n 3 201 ARG n 3 202 HIS n 3 203 PHE n 3 204 SER n 3 205 LYS n 3 206 THR n 3 207 ASN n 3 208 GLU n 3 209 LEU n 3 210 LEU n 3 211 GLN n 3 212 LYS n 3 213 SER n 3 214 GLY n 3 215 LYS n 3 216 LYS n 3 217 PRO n 3 218 ILE n 3 219 ASP n 3 220 TRP n 3 221 LYS n 3 222 GLU n 3 223 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'UNG, DGU, UNG1, UNG15' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'synthetically made' 2 1 sample ? ? ? ? ? 'synthetically made' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 2OXM 2OXM 1 TGTTATCTT 1 ? 2 PDB 2OXM 2OXM 2 'AAAGAT(4MF)ACA' 1 ? 3 UNP UNG_HUMAN P13051 3 ;FGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPV PPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLL WGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; 94 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OXM B 1 ? 9 ? 2OXM 2 ? 10 ? 2 10 2 2 2OXM C 1 ? 10 ? 2OXM 21 ? 30 ? 21 30 3 3 2OXM A 4 ? 223 ? P13051 94 ? 313 ? 85 304 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 2OXM MET A 1 ? UNP P13051 ? ? 'expression tag' 82 1 3 2OXM GLU A 2 ? UNP P13051 ? ? 'expression tag' 83 2 3 2OXM PHE A 3 ? UNP P13051 ? ? 'expression tag' 84 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4MF 'DNA linking' . '1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-4-METHYL-1H-INDOLE' ? 'C14 H18 N O6 P' 327.270 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2OXM _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;A solution of human UNG2 (22 mg/ml) in 50 mM Tris-OAc buffer pH 7.0, 150 mM NaCl and 1mM DTT was mixed with T/M duplex DNA (2.5 mM)m incubate at room Temperature for 30 min. and then centrifugate at 10000 g for 5 min.Co-crystallizarion condition were 22% PEG 4000, 100 MM HEPES pH 6.5 and 1mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 Tris-OAc ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 DTT ? ? ? 1 4 1 'PEG 4000' ? ? ? 1 5 1 HEPES ? ? ? 1 6 1 H2O ? ? ? 1 7 2 'PEG 4000' ? ? ? 1 8 2 HEPES ? ? ? 1 9 2 DTT ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2006-05-11 _diffrn_detector.details 'Osmic Mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator mirror _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2OXM _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 40.000 _reflns.number_obs 11434 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 8.300 _reflns.pdbx_chi_squared 2.784 _reflns.pdbx_redundancy 4.100 _reflns.percent_possible_obs 97.100 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I -3.5 _reflns.number_all 12024 _reflns.pdbx_Rsym_value 0.162 _reflns.B_iso_Wilson_estimate 50.583 _reflns.R_free_details ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.599 _reflns_shell.meanI_over_sigI_obs 1.91 _reflns_shell.pdbx_Rsym_value 0.59 _reflns_shell.pdbx_chi_squared 1.834 _reflns_shell.pdbx_redundancy 3.60 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1046 _reflns_shell.percent_possible_all 89.40 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OXM _refine.ls_d_res_high 2.5 _refine.ls_d_res_low 29.5 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 94.840 _refine.ls_number_reflns_obs 11397 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.257 _refine.ls_R_factor_R_work 0.254 _refine.ls_R_factor_R_free 0.328 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 535 _refine.B_iso_mean 39.756 _refine.aniso_B[1][1] -3.730 _refine.aniso_B[2][2] -2.920 _refine.aniso_B[3][3] 6.650 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.898 _refine.correlation_coeff_Fo_to_Fc_free 0.846 _refine.pdbx_overall_ESU_R 0.757 _refine.pdbx_overall_ESU_R_Free 0.382 _refine.overall_SU_ML 0.210 _refine.overall_SU_B 9.116 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 12024 _refine.ls_R_factor_all 0.257 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1EMH _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1808 _refine_hist.pdbx_number_atoms_nucleic_acid 384 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 2299 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 29.5 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2299 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3187 1.712 2.148 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 222 6.268 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 89 38.169 23.708 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 307 18.191 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 11.617 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 330 0.137 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1649 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1243 0.243 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1478 0.308 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 160 0.208 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 32 0.224 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.242 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1132 0.442 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1796 0.773 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1433 1.025 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1391 1.675 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.5 _refine_ls_shell.d_res_low 2.517 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 62.570 _refine_ls_shell.number_reflns_R_work 523 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.325 _refine_ls_shell.R_factor_R_free 0.374 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 17 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 540 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OXM _struct.title ;Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OXM _struct_keywords.pdbx_keywords Hydrolase/DNA _struct_keywords.text 'ENZYME DNA COMPLEX, UNG2, URACIL DNA GLYCOSYLASE, Hydrolase-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 5 ? SER C 13 ? GLY A 86 SER A 94 1 ? 9 HELX_P HELX_P2 2 LYS C 18 ? TYR C 35 ? LYS A 99 TYR A 116 1 ? 18 HELX_P HELX_P3 3 PHE C 45 ? GLN C 49 ? PHE A 126 GLN A 130 5 ? 5 HELX_P HELX_P4 4 ASP C 52 ? VAL C 56 ? ASP A 133 VAL A 137 5 ? 5 HELX_P HELX_P5 5 PRO C 86 ? ILE C 100 ? PRO A 167 ILE A 181 1 ? 15 HELX_P HELX_P6 6 LEU C 111 ? LYS C 116 ? LEU A 192 LYS A 197 1 ? 6 HELX_P HELX_P7 7 GLY C 140 ? SER C 156 ? GLY A 221 SER A 237 1 ? 17 HELX_P HELX_P8 8 TYR C 167 ? ILE C 175 ? TYR A 248 ILE A 256 5 ? 9 HELX_P HELX_P9 9 SER C 192 ? GLY C 196 ? SER A 273 GLY A 277 5 ? 5 HELX_P HELX_P10 10 ARG C 201 ? LYS C 212 ? ARG A 282 LYS A 293 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 6 "O3'" ? ? ? 1_555 B 4MF 7 P ? ? C DT 26 C 4MF 27 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale2 covale both ? B 4MF 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? C 4MF 27 C DA 28 1_555 ? ? ? ? ? ? ? 1.591 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 4 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 4 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 6 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 6 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 7 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 7 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 9 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 9 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 1 N6 ? ? B DT 10 C DA 21 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog16 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 10 C DA 22 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 C . ? TYR 119 A PRO 39 C ? PRO 120 A 1 -2.82 2 ARG 81 C . ? ARG 162 A PRO 82 C ? PRO 163 A 1 8.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 37 ? TYR C 38 ? VAL A 118 TYR A 119 A 2 VAL C 128 ? ARG C 129 ? VAL A 209 ARG A 210 B 1 VAL C 119 ? ASN C 123 ? VAL A 200 ASN A 204 B 2 VAL C 58 ? GLY C 62 ? VAL A 139 GLY A 143 B 3 VAL C 160 ? TRP C 164 ? VAL A 241 TRP A 245 B 4 HIS C 181 ? THR C 185 ? HIS A 262 THR A 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR C 38 ? N TYR A 119 O VAL C 128 ? O VAL A 209 B 1 2 O LEU C 122 ? O LEU A 203 N ILE C 60 ? N ILE A 141 B 2 3 N VAL C 59 ? N VAL A 140 O LEU C 162 ? O LEU A 243 B 3 4 N PHE C 161 ? N PHE A 242 O HIS C 181 ? O HIS A 262 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id 4MF _struct_site.pdbx_auth_seq_id 27 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE 4MF C 27' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS C 10 ? LYS A 91 . ? 1_555 ? 2 AC1 6 TYR C 194 ? TYR A 275 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH A 370 . ? 1_555 ? 4 AC1 6 DT A 3 ? DT B 4 . ? 1_555 ? 5 AC1 6 DT B 6 ? DT C 26 . ? 1_555 ? 6 AC1 6 DA B 8 ? DA C 28 . ? 1_555 ? # _atom_sites.entry_id 2OXM _atom_sites.fract_transf_matrix[1][1] 0.020633 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015252 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010155 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 2 2 DT T B . n A 1 2 DG 2 3 3 DG G B . n A 1 3 DT 3 4 4 DT T B . n A 1 4 DT 4 5 5 DT T B . n A 1 5 DA 5 6 6 DA A B . n A 1 6 DT 6 7 7 DT T B . n A 1 7 DC 7 8 8 DC C B . n A 1 8 DT 8 9 9 DT T B . n A 1 9 DT 9 10 10 DT T B . n B 2 1 DA 1 21 21 DA A C . n B 2 2 DA 2 22 22 DA A C . n B 2 3 DA 3 23 23 DA A C . n B 2 4 DG 4 24 24 DG G C . n B 2 5 DA 5 25 25 DA A C . n B 2 6 DT 6 26 26 DT T C . n B 2 7 4MF 7 27 27 4MF 4MF C . n B 2 8 DA 8 28 28 DA A C . n B 2 9 DC 9 29 29 DC C C . n B 2 10 DA 10 30 30 DA A C . n C 3 1 MET 1 82 82 MET MET A . n C 3 2 GLU 2 83 83 GLU GLU A . n C 3 3 PHE 3 84 84 PHE PHE A . n C 3 4 PHE 4 85 85 PHE PHE A . n C 3 5 GLY 5 86 86 GLY GLY A . n C 3 6 GLU 6 87 87 GLU GLU A . n C 3 7 SER 7 88 88 SER SER A . n C 3 8 TRP 8 89 89 TRP TRP A . n C 3 9 LYS 9 90 90 LYS LYS A . n C 3 10 LYS 10 91 91 LYS LYS A . n C 3 11 HIS 11 92 92 HIS HIS A . n C 3 12 LEU 12 93 93 LEU LEU A . n C 3 13 SER 13 94 94 SER SER A . n C 3 14 GLY 14 95 95 GLY GLY A . n C 3 15 GLU 15 96 96 GLU GLU A . n C 3 16 PHE 16 97 97 PHE PHE A . n C 3 17 GLY 17 98 98 GLY GLY A . n C 3 18 LYS 18 99 99 LYS LYS A . n C 3 19 PRO 19 100 100 PRO PRO A . n C 3 20 TYR 20 101 101 TYR TYR A . n C 3 21 PHE 21 102 102 PHE PHE A . n C 3 22 ILE 22 103 103 ILE ILE A . n C 3 23 LYS 23 104 104 LYS LYS A . n C 3 24 LEU 24 105 105 LEU LEU A . n C 3 25 MET 25 106 106 MET MET A . n C 3 26 GLY 26 107 107 GLY GLY A . n C 3 27 PHE 27 108 108 PHE PHE A . n C 3 28 VAL 28 109 109 VAL VAL A . n C 3 29 ALA 29 110 110 ALA ALA A . n C 3 30 GLU 30 111 111 GLU GLU A . n C 3 31 GLU 31 112 112 GLU GLU A . n C 3 32 ARG 32 113 113 ARG ARG A . n C 3 33 LYS 33 114 114 LYS LYS A . n C 3 34 HIS 34 115 115 HIS HIS A . n C 3 35 TYR 35 116 116 TYR TYR A . n C 3 36 THR 36 117 117 THR THR A . n C 3 37 VAL 37 118 118 VAL VAL A . n C 3 38 TYR 38 119 119 TYR TYR A . n C 3 39 PRO 39 120 120 PRO PRO A . n C 3 40 PRO 40 121 121 PRO PRO A . n C 3 41 PRO 41 122 122 PRO PRO A . n C 3 42 HIS 42 123 123 HIS HIS A . n C 3 43 GLN 43 124 124 GLN GLN A . n C 3 44 VAL 44 125 125 VAL VAL A . n C 3 45 PHE 45 126 126 PHE PHE A . n C 3 46 THR 46 127 127 THR THR A . n C 3 47 TRP 47 128 128 TRP TRP A . n C 3 48 THR 48 129 129 THR THR A . n C 3 49 GLN 49 130 130 GLN GLN A . n C 3 50 MET 50 131 131 MET MET A . n C 3 51 CYS 51 132 132 CYS CYS A . n C 3 52 ASP 52 133 133 ASP ASP A . n C 3 53 ILE 53 134 134 ILE ILE A . n C 3 54 LYS 54 135 135 LYS LYS A . n C 3 55 ASP 55 136 136 ASP ASP A . n C 3 56 VAL 56 137 137 VAL VAL A . n C 3 57 LYS 57 138 138 LYS LYS A . n C 3 58 VAL 58 139 139 VAL VAL A . n C 3 59 VAL 59 140 140 VAL VAL A . n C 3 60 ILE 60 141 141 ILE ILE A . n C 3 61 LEU 61 142 142 LEU LEU A . n C 3 62 GLY 62 143 143 GLY GLY A . n C 3 63 GLN 63 144 144 GLN GLN A . n C 3 64 ASP 64 145 145 ASP ASP A . n C 3 65 PRO 65 146 146 PRO PRO A . n C 3 66 TYR 66 147 147 TYR TYR A . n C 3 67 HIS 67 148 148 HIS HIS A . n C 3 68 GLY 68 149 149 GLY GLY A . n C 3 69 PRO 69 150 150 PRO PRO A . n C 3 70 ASN 70 151 151 ASN ASN A . n C 3 71 GLN 71 152 152 GLN GLN A . n C 3 72 ALA 72 153 153 ALA ALA A . n C 3 73 HIS 73 154 154 HIS HIS A . n C 3 74 GLY 74 155 155 GLY GLY A . n C 3 75 LEU 75 156 156 LEU LEU A . n C 3 76 CYS 76 157 157 CYS CYS A . n C 3 77 PHE 77 158 158 PHE PHE A . n C 3 78 SER 78 159 159 SER SER A . n C 3 79 VAL 79 160 160 VAL VAL A . n C 3 80 GLN 80 161 161 GLN GLN A . n C 3 81 ARG 81 162 162 ARG ARG A . n C 3 82 PRO 82 163 163 PRO PRO A . n C 3 83 VAL 83 164 164 VAL VAL A . n C 3 84 PRO 84 165 165 PRO PRO A . n C 3 85 PRO 85 166 166 PRO PRO A . n C 3 86 PRO 86 167 167 PRO PRO A . n C 3 87 PRO 87 168 168 PRO PRO A . n C 3 88 SER 88 169 169 SER SER A . n C 3 89 LEU 89 170 170 LEU LEU A . n C 3 90 GLU 90 171 171 GLU GLU A . n C 3 91 ASN 91 172 172 ASN ASN A . n C 3 92 ILE 92 173 173 ILE ILE A . n C 3 93 TYR 93 174 174 TYR TYR A . n C 3 94 LYS 94 175 175 LYS LYS A . n C 3 95 GLU 95 176 176 GLU GLU A . n C 3 96 LEU 96 177 177 LEU LEU A . n C 3 97 SER 97 178 178 SER SER A . n C 3 98 THR 98 179 179 THR THR A . n C 3 99 ASP 99 180 180 ASP ASP A . n C 3 100 ILE 100 181 181 ILE ILE A . n C 3 101 GLU 101 182 182 GLU GLU A . n C 3 102 ASP 102 183 183 ASP ASP A . n C 3 103 PHE 103 184 184 PHE PHE A . n C 3 104 VAL 104 185 185 VAL VAL A . n C 3 105 HIS 105 186 186 HIS HIS A . n C 3 106 PRO 106 187 187 PRO PRO A . n C 3 107 GLY 107 188 188 GLY GLY A . n C 3 108 HIS 108 189 189 HIS HIS A . n C 3 109 GLY 109 190 190 GLY GLY A . n C 3 110 ASP 110 191 191 ASP ASP A . n C 3 111 LEU 111 192 192 LEU LEU A . n C 3 112 SER 112 193 193 SER SER A . n C 3 113 GLY 113 194 194 GLY GLY A . n C 3 114 TRP 114 195 195 TRP TRP A . n C 3 115 ALA 115 196 196 ALA ALA A . n C 3 116 LYS 116 197 197 LYS LYS A . n C 3 117 GLN 117 198 198 GLN GLN A . n C 3 118 GLY 118 199 199 GLY GLY A . n C 3 119 VAL 119 200 200 VAL VAL A . n C 3 120 LEU 120 201 201 LEU LEU A . n C 3 121 LEU 121 202 202 LEU LEU A . n C 3 122 LEU 122 203 203 LEU LEU A . n C 3 123 ASN 123 204 204 ASN ASN A . n C 3 124 ALA 124 205 205 ALA ALA A . n C 3 125 VAL 125 206 206 VAL VAL A . n C 3 126 LEU 126 207 207 LEU LEU A . n C 3 127 THR 127 208 208 THR THR A . n C 3 128 VAL 128 209 209 VAL VAL A . n C 3 129 ARG 129 210 210 ARG ARG A . n C 3 130 ALA 130 211 211 ALA ALA A . n C 3 131 HIS 131 212 212 HIS HIS A . n C 3 132 GLN 132 213 213 GLN GLN A . n C 3 133 ALA 133 214 214 ALA ALA A . n C 3 134 ASN 134 215 215 ASN ASN A . n C 3 135 SER 135 216 216 SER SER A . n C 3 136 HIS 136 217 217 HIS HIS A . n C 3 137 LYS 137 218 218 LYS LYS A . n C 3 138 GLU 138 219 219 GLU GLU A . n C 3 139 ARG 139 220 220 ARG ARG A . n C 3 140 GLY 140 221 221 GLY GLY A . n C 3 141 TRP 141 222 222 TRP TRP A . n C 3 142 GLU 142 223 223 GLU GLU A . n C 3 143 GLN 143 224 224 GLN GLN A . n C 3 144 PHE 144 225 225 PHE PHE A . n C 3 145 THR 145 226 226 THR THR A . n C 3 146 ASP 146 227 227 ASP ASP A . n C 3 147 ALA 147 228 228 ALA ALA A . n C 3 148 VAL 148 229 229 VAL VAL A . n C 3 149 VAL 149 230 230 VAL VAL A . n C 3 150 SER 150 231 231 SER SER A . n C 3 151 TRP 151 232 232 TRP TRP A . n C 3 152 LEU 152 233 233 LEU LEU A . n C 3 153 ASN 153 234 234 ASN ASN A . n C 3 154 GLN 154 235 235 GLN GLN A . n C 3 155 ASN 155 236 236 ASN ASN A . n C 3 156 SER 156 237 237 SER SER A . n C 3 157 ASN 157 238 238 ASN ASN A . n C 3 158 GLY 158 239 239 GLY GLY A . n C 3 159 LEU 159 240 240 LEU LEU A . n C 3 160 VAL 160 241 241 VAL VAL A . n C 3 161 PHE 161 242 242 PHE PHE A . n C 3 162 LEU 162 243 243 LEU LEU A . n C 3 163 LEU 163 244 244 LEU LEU A . n C 3 164 TRP 164 245 245 TRP TRP A . n C 3 165 GLY 165 246 246 GLY GLY A . n C 3 166 SER 166 247 247 SER SER A . n C 3 167 TYR 167 248 248 TYR TYR A . n C 3 168 ALA 168 249 249 ALA ALA A . n C 3 169 GLN 169 250 250 GLN GLN A . n C 3 170 LYS 170 251 251 LYS LYS A . n C 3 171 LYS 171 252 252 LYS LYS A . n C 3 172 GLY 172 253 253 GLY GLY A . n C 3 173 SER 173 254 254 SER SER A . n C 3 174 ALA 174 255 255 ALA ALA A . n C 3 175 ILE 175 256 256 ILE ILE A . n C 3 176 ASP 176 257 257 ASP ASP A . n C 3 177 ARG 177 258 258 ARG ARG A . n C 3 178 LYS 178 259 259 LYS LYS A . n C 3 179 ARG 179 260 260 ARG ARG A . n C 3 180 HIS 180 261 261 HIS HIS A . n C 3 181 HIS 181 262 262 HIS HIS A . n C 3 182 VAL 182 263 263 VAL VAL A . n C 3 183 LEU 183 264 264 LEU LEU A . n C 3 184 GLN 184 265 265 GLN GLN A . n C 3 185 THR 185 266 266 THR THR A . n C 3 186 ALA 186 267 267 ALA ALA A . n C 3 187 HIS 187 268 268 HIS HIS A . n C 3 188 PRO 188 269 269 PRO PRO A . n C 3 189 SER 189 270 270 SER SER A . n C 3 190 PRO 190 271 271 PRO PRO A . n C 3 191 LEU 191 272 272 LEU LEU A . n C 3 192 SER 192 273 273 SER SER A . n C 3 193 VAL 193 274 274 VAL VAL A . n C 3 194 TYR 194 275 275 TYR TYR A . n C 3 195 ARG 195 276 276 ARG ARG A . n C 3 196 GLY 196 277 277 GLY GLY A . n C 3 197 PHE 197 278 278 PHE PHE A . n C 3 198 PHE 198 279 279 PHE PHE A . n C 3 199 GLY 199 280 280 GLY GLY A . n C 3 200 CYS 200 281 281 CYS CYS A . n C 3 201 ARG 201 282 282 ARG ARG A . n C 3 202 HIS 202 283 283 HIS HIS A . n C 3 203 PHE 203 284 284 PHE PHE A . n C 3 204 SER 204 285 285 SER SER A . n C 3 205 LYS 205 286 286 LYS LYS A . n C 3 206 THR 206 287 287 THR THR A . n C 3 207 ASN 207 288 288 ASN ASN A . n C 3 208 GLU 208 289 289 GLU GLU A . n C 3 209 LEU 209 290 290 LEU LEU A . n C 3 210 LEU 210 291 291 LEU LEU A . n C 3 211 GLN 211 292 292 GLN GLN A . n C 3 212 LYS 212 293 293 LYS LYS A . n C 3 213 SER 213 294 294 SER SER A . n C 3 214 GLY 214 295 295 GLY GLY A . n C 3 215 LYS 215 296 296 LYS LYS A . n C 3 216 LYS 216 297 297 LYS LYS A . n C 3 217 PRO 217 298 298 PRO PRO A . n C 3 218 ILE 218 299 299 ILE ILE A . n C 3 219 ASP 219 300 300 ASP ASP A . n C 3 220 TRP 220 301 301 TRP TRP A . n C 3 221 LYS 221 302 302 LYS LYS A . n C 3 222 GLU 222 303 303 GLU GLU A . n C 3 223 LEU 223 304 304 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 17 17 HOH HOH B . D 4 HOH 2 40 40 HOH HOH B . D 4 HOH 3 44 44 HOH HOH B . D 4 HOH 4 47 47 HOH HOH B . D 4 HOH 5 61 61 HOH HOH B . D 4 HOH 6 68 68 HOH HOH B . D 4 HOH 7 71 71 HOH HOH B . D 4 HOH 8 76 76 HOH HOH B . D 4 HOH 9 91 91 HOH HOH B . D 4 HOH 10 99 99 HOH HOH B . D 4 HOH 11 101 101 HOH HOH B . D 4 HOH 12 106 106 HOH HOH B . E 4 HOH 1 8 8 HOH HOH C . E 4 HOH 2 20 20 HOH HOH C . E 4 HOH 3 31 31 HOH HOH C . E 4 HOH 4 42 42 HOH HOH C . E 4 HOH 5 51 51 HOH HOH C . E 4 HOH 6 54 54 HOH HOH C . E 4 HOH 7 55 55 HOH HOH C . E 4 HOH 8 58 58 HOH HOH C . E 4 HOH 9 69 69 HOH HOH C . E 4 HOH 10 97 97 HOH HOH C . F 4 HOH 1 305 2 HOH HOH A . F 4 HOH 2 306 3 HOH HOH A . F 4 HOH 3 307 4 HOH HOH A . F 4 HOH 4 308 5 HOH HOH A . F 4 HOH 5 309 6 HOH HOH A . F 4 HOH 6 310 7 HOH HOH A . F 4 HOH 7 311 9 HOH HOH A . F 4 HOH 8 312 10 HOH HOH A . F 4 HOH 9 313 11 HOH HOH A . F 4 HOH 10 314 12 HOH HOH A . F 4 HOH 11 315 13 HOH HOH A . F 4 HOH 12 316 14 HOH HOH A . F 4 HOH 13 317 15 HOH HOH A . F 4 HOH 14 318 16 HOH HOH A . F 4 HOH 15 319 18 HOH HOH A . F 4 HOH 16 320 19 HOH HOH A . F 4 HOH 17 321 21 HOH HOH A . F 4 HOH 18 322 22 HOH HOH A . F 4 HOH 19 323 23 HOH HOH A . F 4 HOH 20 324 24 HOH HOH A . F 4 HOH 21 325 25 HOH HOH A . F 4 HOH 22 326 26 HOH HOH A . F 4 HOH 23 327 27 HOH HOH A . F 4 HOH 24 328 28 HOH HOH A . F 4 HOH 25 329 29 HOH HOH A . F 4 HOH 26 330 30 HOH HOH A . F 4 HOH 27 331 32 HOH HOH A . F 4 HOH 28 332 33 HOH HOH A . F 4 HOH 29 333 34 HOH HOH A . F 4 HOH 30 334 35 HOH HOH A . F 4 HOH 31 335 36 HOH HOH A . F 4 HOH 32 336 37 HOH HOH A . F 4 HOH 33 337 38 HOH HOH A . F 4 HOH 34 338 39 HOH HOH A . F 4 HOH 35 339 41 HOH HOH A . F 4 HOH 36 340 43 HOH HOH A . F 4 HOH 37 341 45 HOH HOH A . F 4 HOH 38 342 46 HOH HOH A . F 4 HOH 39 343 48 HOH HOH A . F 4 HOH 40 344 49 HOH HOH A . F 4 HOH 41 345 50 HOH HOH A . F 4 HOH 42 346 52 HOH HOH A . F 4 HOH 43 347 56 HOH HOH A . F 4 HOH 44 348 57 HOH HOH A . F 4 HOH 45 349 59 HOH HOH A . F 4 HOH 46 350 60 HOH HOH A . F 4 HOH 47 351 62 HOH HOH A . F 4 HOH 48 352 63 HOH HOH A . F 4 HOH 49 353 64 HOH HOH A . F 4 HOH 50 354 65 HOH HOH A . F 4 HOH 51 355 66 HOH HOH A . F 4 HOH 52 356 67 HOH HOH A . F 4 HOH 53 357 70 HOH HOH A . F 4 HOH 54 358 72 HOH HOH A . F 4 HOH 55 359 73 HOH HOH A . F 4 HOH 56 360 74 HOH HOH A . F 4 HOH 57 361 75 HOH HOH A . F 4 HOH 58 362 77 HOH HOH A . F 4 HOH 59 363 78 HOH HOH A . F 4 HOH 60 364 79 HOH HOH A . F 4 HOH 61 365 80 HOH HOH A . F 4 HOH 62 366 81 HOH HOH A . F 4 HOH 63 367 82 HOH HOH A . F 4 HOH 64 368 83 HOH HOH A . F 4 HOH 65 369 84 HOH HOH A . F 4 HOH 66 370 85 HOH HOH A . F 4 HOH 67 371 86 HOH HOH A . F 4 HOH 68 372 87 HOH HOH A . F 4 HOH 69 373 88 HOH HOH A . F 4 HOH 70 374 89 HOH HOH A . F 4 HOH 71 375 90 HOH HOH A . F 4 HOH 72 376 92 HOH HOH A . F 4 HOH 73 377 93 HOH HOH A . F 4 HOH 74 378 94 HOH HOH A . F 4 HOH 75 379 95 HOH HOH A . F 4 HOH 76 380 96 HOH HOH A . F 4 HOH 77 381 98 HOH HOH A . F 4 HOH 78 382 100 HOH HOH A . F 4 HOH 79 383 102 HOH HOH A . F 4 HOH 80 384 103 HOH HOH A . F 4 HOH 81 385 104 HOH HOH A . F 4 HOH 82 386 107 HOH HOH A . F 4 HOH 83 387 108 HOH HOH A . F 4 HOH 84 388 109 HOH HOH A . F 4 HOH 85 389 110 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_ref_seq 9 5 'Structure model' struct_ref_seq_dif 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_audit_author.name' 11 5 'Structure model' '_database_2.pdbx_DOI' 12 5 'Structure model' '_database_2.pdbx_database_accession' 13 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 5 'Structure model' '_struct_ref_seq.db_align_beg' 15 5 'Structure model' '_struct_ref_seq.db_align_end' 16 5 'Structure model' '_struct_ref_seq_dif.details' 17 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 2OXM _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 29.350 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 29.350 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" B DT 2 ? ? "O4'" B DT 2 ? ? "C4'" B DT 2 ? ? 103.52 110.10 -6.58 1.00 N 2 1 "C3'" B DT 2 ? ? "C2'" B DT 2 ? ? "C1'" B DT 2 ? ? 95.49 102.40 -6.91 0.80 N 3 1 "O4'" B DT 2 ? ? "C1'" B DT 2 ? ? N1 B DT 2 ? ? 114.44 108.30 6.14 0.30 N 4 1 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? N1 B DT 4 ? ? 111.52 108.30 3.22 0.30 N 5 1 "O4'" B DA 6 ? ? "C1'" B DA 6 ? ? N9 B DA 6 ? ? 102.92 108.00 -5.08 0.70 N 6 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? "C2'" B DT 7 ? ? 109.82 106.80 3.02 0.50 N 7 1 "C3'" B DT 7 ? ? "O3'" B DT 7 ? ? P B DC 8 ? ? 130.15 119.70 10.45 1.20 Y 8 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 112.01 108.30 3.71 0.30 N 9 1 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 100.09 104.50 -4.41 0.40 N 10 1 "C3'" C DA 22 ? ? "O3'" C DA 22 ? ? P C DA 23 ? ? 127.87 119.70 8.17 1.20 Y 11 1 "O4'" C DA 23 ? ? "C1'" C DA 23 ? ? N9 C DA 23 ? ? 111.23 108.30 2.93 0.30 N 12 1 "O4'" C DT 26 ? ? "C4'" C DT 26 ? ? "C3'" C DT 26 ? ? 99.56 104.50 -4.94 0.40 N 13 1 "C1'" C DT 26 ? ? "O4'" C DT 26 ? ? "C4'" C DT 26 ? ? 102.58 110.10 -7.52 1.00 N 14 1 "C3'" C DT 26 ? ? "O3'" C DT 26 ? ? P C 4MF 27 ? ? 144.67 119.70 24.97 1.20 Y 15 1 "O3'" C DT 26 ? ? P C 4MF 27 ? ? "O5'" C 4MF 27 ? ? 132.51 104.00 28.51 1.90 Y 16 1 "C3'" C 4MF 27 ? ? "O3'" C 4MF 27 ? ? P C DA 28 ? ? 129.58 119.70 9.88 1.20 Y 17 1 "O3'" C 4MF 27 ? ? P C DA 28 ? ? OP2 C DA 28 ? ? 118.28 110.50 7.78 1.10 Y 18 1 "O3'" C 4MF 27 ? ? P C DA 28 ? ? OP1 C DA 28 ? ? 90.29 105.20 -14.91 2.20 Y 19 1 "O4'" C DC 29 ? ? "C1'" C DC 29 ? ? N1 C DC 29 ? ? 111.83 108.30 3.53 0.30 N 20 1 "C3'" C DC 29 ? ? "O3'" C DC 29 ? ? P C DA 30 ? ? 131.68 119.70 11.98 1.20 Y 21 1 "O3'" C DC 29 ? ? P C DA 30 ? ? "O5'" C DA 30 ? ? 88.83 104.00 -15.17 1.90 Y 22 1 "O3'" C DC 29 ? ? P C DA 30 ? ? OP2 C DA 30 ? ? 83.00 105.20 -22.20 2.20 Y 23 1 "O3'" C DC 29 ? ? P C DA 30 ? ? OP1 C DA 30 ? ? 89.34 105.20 -15.86 2.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 83 ? ? 168.30 -167.42 2 1 LEU A 93 ? ? -131.83 -32.87 3 1 SER A 94 ? ? -41.34 -18.83 4 1 GLN A 144 ? ? -76.58 -84.43 5 1 GLN A 152 ? ? -100.48 -77.04 6 1 PHE A 158 ? ? 81.38 -11.55 7 1 ARG A 162 ? ? -39.07 127.70 8 1 VAL A 164 ? ? -28.52 134.55 9 1 ASN A 215 ? ? 49.77 19.46 10 1 ASN A 234 ? ? -39.78 -35.46 11 1 ARG A 258 ? ? -68.38 1.85 12 1 PRO A 269 ? ? -47.38 -4.52 13 1 LEU A 272 ? ? -58.81 -9.62 14 1 SER A 273 ? ? -143.40 -49.85 15 1 VAL A 274 ? ? -12.27 -39.48 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4MF O3P O N N 1 4MF O2P O N N 2 4MF P P N N 3 4MF O1P O N N 4 4MF "O5'" O N N 5 4MF "C5'" C N N 6 4MF "C4'" C N R 7 4MF "C3'" C N S 8 4MF "O3'" O N N 9 4MF "C2'" C N N 10 4MF "C1'" C N R 11 4MF "O4'" O N N 12 4MF N1 N Y N 13 4MF C7A C Y N 14 4MF C7 C Y N 15 4MF C6 C Y N 16 4MF C5 C Y N 17 4MF C4 C Y N 18 4MF C4M C N N 19 4MF C3A C Y N 20 4MF C3 C Y N 21 4MF C2 C Y N 22 4MF HOP3 H N N 23 4MF HOP2 H N N 24 4MF "H5'1" H N N 25 4MF "H5'2" H N N 26 4MF "H4'" H N N 27 4MF "H3'" H N N 28 4MF H3T H N N 29 4MF "H2'1" H N N 30 4MF "H2'2" H N N 31 4MF "H1'" H N N 32 4MF H7 H N N 33 4MF H6 H N N 34 4MF H5 H N N 35 4MF H4M1 H N N 36 4MF H4M2 H N N 37 4MF H4M3 H N N 38 4MF H3 H N N 39 4MF H2 H N N 40 ALA N N N N 41 ALA CA C N S 42 ALA C C N N 43 ALA O O N N 44 ALA CB C N N 45 ALA OXT O N N 46 ALA H H N N 47 ALA H2 H N N 48 ALA HA H N N 49 ALA HB1 H N N 50 ALA HB2 H N N 51 ALA HB3 H N N 52 ALA HXT H N N 53 ARG N N N N 54 ARG CA C N S 55 ARG C C N N 56 ARG O O N N 57 ARG CB C N N 58 ARG CG C N N 59 ARG CD C N N 60 ARG NE N N N 61 ARG CZ C N N 62 ARG NH1 N N N 63 ARG NH2 N N N 64 ARG OXT O N N 65 ARG H H N N 66 ARG H2 H N N 67 ARG HA H N N 68 ARG HB2 H N N 69 ARG HB3 H N N 70 ARG HG2 H N N 71 ARG HG3 H N N 72 ARG HD2 H N N 73 ARG HD3 H N N 74 ARG HE H N N 75 ARG HH11 H N N 76 ARG HH12 H N N 77 ARG HH21 H N N 78 ARG HH22 H N N 79 ARG HXT H N N 80 ASN N N N N 81 ASN CA C N S 82 ASN C C N N 83 ASN O O N N 84 ASN CB C N N 85 ASN CG C N N 86 ASN OD1 O N N 87 ASN ND2 N N N 88 ASN OXT O N N 89 ASN H H N N 90 ASN H2 H N N 91 ASN HA H N N 92 ASN HB2 H N N 93 ASN HB3 H N N 94 ASN HD21 H N N 95 ASN HD22 H N N 96 ASN HXT H N N 97 ASP N N N N 98 ASP CA C N S 99 ASP C C N N 100 ASP O O N N 101 ASP CB C N N 102 ASP CG C N N 103 ASP OD1 O N N 104 ASP OD2 O N N 105 ASP OXT O N N 106 ASP H H N N 107 ASP H2 H N N 108 ASP HA H N N 109 ASP HB2 H N N 110 ASP HB3 H N N 111 ASP HD2 H N N 112 ASP HXT H N N 113 CYS N N N N 114 CYS CA C N R 115 CYS C C N N 116 CYS O O N N 117 CYS CB C N N 118 CYS SG S N N 119 CYS OXT O N N 120 CYS H H N N 121 CYS H2 H N N 122 CYS HA H N N 123 CYS HB2 H N N 124 CYS HB3 H N N 125 CYS HG H N N 126 CYS HXT H N N 127 DA OP3 O N N 128 DA P P N N 129 DA OP1 O N N 130 DA OP2 O N N 131 DA "O5'" O N N 132 DA "C5'" C N N 133 DA "C4'" C N R 134 DA "O4'" O N N 135 DA "C3'" C N S 136 DA "O3'" O N N 137 DA "C2'" C N N 138 DA "C1'" C N R 139 DA N9 N Y N 140 DA C8 C Y N 141 DA N7 N Y N 142 DA C5 C Y N 143 DA C6 C Y N 144 DA N6 N N N 145 DA N1 N Y N 146 DA C2 C Y N 147 DA N3 N Y N 148 DA C4 C Y N 149 DA HOP3 H N N 150 DA HOP2 H N N 151 DA "H5'" H N N 152 DA "H5''" H N N 153 DA "H4'" H N N 154 DA "H3'" H N N 155 DA "HO3'" H N N 156 DA "H2'" H N N 157 DA "H2''" H N N 158 DA "H1'" H N N 159 DA H8 H N N 160 DA H61 H N N 161 DA H62 H N N 162 DA H2 H N N 163 DC OP3 O N N 164 DC P P N N 165 DC OP1 O N N 166 DC OP2 O N N 167 DC "O5'" O N N 168 DC "C5'" C N N 169 DC "C4'" C N R 170 DC "O4'" O N N 171 DC "C3'" C N S 172 DC "O3'" O N N 173 DC "C2'" C N N 174 DC "C1'" C N R 175 DC N1 N N N 176 DC C2 C N N 177 DC O2 O N N 178 DC N3 N N N 179 DC C4 C N N 180 DC N4 N N N 181 DC C5 C N N 182 DC C6 C N N 183 DC HOP3 H N N 184 DC HOP2 H N N 185 DC "H5'" H N N 186 DC "H5''" H N N 187 DC "H4'" H N N 188 DC "H3'" H N N 189 DC "HO3'" H N N 190 DC "H2'" H N N 191 DC "H2''" H N N 192 DC "H1'" H N N 193 DC H41 H N N 194 DC H42 H N N 195 DC H5 H N N 196 DC H6 H N N 197 DG OP3 O N N 198 DG P P N N 199 DG OP1 O N N 200 DG OP2 O N N 201 DG "O5'" O N N 202 DG "C5'" C N N 203 DG "C4'" C N R 204 DG "O4'" O N N 205 DG "C3'" C N S 206 DG "O3'" O N N 207 DG "C2'" C N N 208 DG "C1'" C N R 209 DG N9 N Y N 210 DG C8 C Y N 211 DG N7 N Y N 212 DG C5 C Y N 213 DG C6 C N N 214 DG O6 O N N 215 DG N1 N N N 216 DG C2 C N N 217 DG N2 N N N 218 DG N3 N N N 219 DG C4 C Y N 220 DG HOP3 H N N 221 DG HOP2 H N N 222 DG "H5'" H N N 223 DG "H5''" H N N 224 DG "H4'" H N N 225 DG "H3'" H N N 226 DG "HO3'" H N N 227 DG "H2'" H N N 228 DG "H2''" H N N 229 DG "H1'" H N N 230 DG H8 H N N 231 DG H1 H N N 232 DG H21 H N N 233 DG H22 H N N 234 DT OP3 O N N 235 DT P P N N 236 DT OP1 O N N 237 DT OP2 O N N 238 DT "O5'" O N N 239 DT "C5'" C N N 240 DT "C4'" C N R 241 DT "O4'" O N N 242 DT "C3'" C N S 243 DT "O3'" O N N 244 DT "C2'" C N N 245 DT "C1'" C N R 246 DT N1 N N N 247 DT C2 C N N 248 DT O2 O N N 249 DT N3 N N N 250 DT C4 C N N 251 DT O4 O N N 252 DT C5 C N N 253 DT C7 C N N 254 DT C6 C N N 255 DT HOP3 H N N 256 DT HOP2 H N N 257 DT "H5'" H N N 258 DT "H5''" H N N 259 DT "H4'" H N N 260 DT "H3'" H N N 261 DT "HO3'" H N N 262 DT "H2'" H N N 263 DT "H2''" H N N 264 DT "H1'" H N N 265 DT H3 H N N 266 DT H71 H N N 267 DT H72 H N N 268 DT H73 H N N 269 DT H6 H N N 270 GLN N N N N 271 GLN CA C N S 272 GLN C C N N 273 GLN O O N N 274 GLN CB C N N 275 GLN CG C N N 276 GLN CD C N N 277 GLN OE1 O N N 278 GLN NE2 N N N 279 GLN OXT O N N 280 GLN H H N N 281 GLN H2 H N N 282 GLN HA H N N 283 GLN HB2 H N N 284 GLN HB3 H N N 285 GLN HG2 H N N 286 GLN HG3 H N N 287 GLN HE21 H N N 288 GLN HE22 H N N 289 GLN HXT H N N 290 GLU N N N N 291 GLU CA C N S 292 GLU C C N N 293 GLU O O N N 294 GLU CB C N N 295 GLU CG C N N 296 GLU CD C N N 297 GLU OE1 O N N 298 GLU OE2 O N N 299 GLU OXT O N N 300 GLU H H N N 301 GLU H2 H N N 302 GLU HA H N N 303 GLU HB2 H N N 304 GLU HB3 H N N 305 GLU HG2 H N N 306 GLU HG3 H N N 307 GLU HE2 H N N 308 GLU HXT H N N 309 GLY N N N N 310 GLY CA C N N 311 GLY C C N N 312 GLY O O N N 313 GLY OXT O N N 314 GLY H H N N 315 GLY H2 H N N 316 GLY HA2 H N N 317 GLY HA3 H N N 318 GLY HXT H N N 319 HIS N N N N 320 HIS CA C N S 321 HIS C C N N 322 HIS O O N N 323 HIS CB C N N 324 HIS CG C Y N 325 HIS ND1 N Y N 326 HIS CD2 C Y N 327 HIS CE1 C Y N 328 HIS NE2 N Y N 329 HIS OXT O N N 330 HIS H H N N 331 HIS H2 H N N 332 HIS HA H N N 333 HIS HB2 H N N 334 HIS HB3 H N N 335 HIS HD1 H N N 336 HIS HD2 H N N 337 HIS HE1 H N N 338 HIS HE2 H N N 339 HIS HXT H N N 340 HOH O O N N 341 HOH H1 H N N 342 HOH H2 H N N 343 ILE N N N N 344 ILE CA C N S 345 ILE C C N N 346 ILE O O N N 347 ILE CB C N S 348 ILE CG1 C N N 349 ILE CG2 C N N 350 ILE CD1 C N N 351 ILE OXT O N N 352 ILE H H N N 353 ILE H2 H N N 354 ILE HA H N N 355 ILE HB H N N 356 ILE HG12 H N N 357 ILE HG13 H N N 358 ILE HG21 H N N 359 ILE HG22 H N N 360 ILE HG23 H N N 361 ILE HD11 H N N 362 ILE HD12 H N N 363 ILE HD13 H N N 364 ILE HXT H N N 365 LEU N N N N 366 LEU CA C N S 367 LEU C C N N 368 LEU O O N N 369 LEU CB C N N 370 LEU CG C N N 371 LEU CD1 C N N 372 LEU CD2 C N N 373 LEU OXT O N N 374 LEU H H N N 375 LEU H2 H N N 376 LEU HA H N N 377 LEU HB2 H N N 378 LEU HB3 H N N 379 LEU HG H N N 380 LEU HD11 H N N 381 LEU HD12 H N N 382 LEU HD13 H N N 383 LEU HD21 H N N 384 LEU HD22 H N N 385 LEU HD23 H N N 386 LEU HXT H N N 387 LYS N N N N 388 LYS CA C N S 389 LYS C C N N 390 LYS O O N N 391 LYS CB C N N 392 LYS CG C N N 393 LYS CD C N N 394 LYS CE C N N 395 LYS NZ N N N 396 LYS OXT O N N 397 LYS H H N N 398 LYS H2 H N N 399 LYS HA H N N 400 LYS HB2 H N N 401 LYS HB3 H N N 402 LYS HG2 H N N 403 LYS HG3 H N N 404 LYS HD2 H N N 405 LYS HD3 H N N 406 LYS HE2 H N N 407 LYS HE3 H N N 408 LYS HZ1 H N N 409 LYS HZ2 H N N 410 LYS HZ3 H N N 411 LYS HXT H N N 412 MET N N N N 413 MET CA C N S 414 MET C C N N 415 MET O O N N 416 MET CB C N N 417 MET CG C N N 418 MET SD S N N 419 MET CE C N N 420 MET OXT O N N 421 MET H H N N 422 MET H2 H N N 423 MET HA H N N 424 MET HB2 H N N 425 MET HB3 H N N 426 MET HG2 H N N 427 MET HG3 H N N 428 MET HE1 H N N 429 MET HE2 H N N 430 MET HE3 H N N 431 MET HXT H N N 432 PHE N N N N 433 PHE CA C N S 434 PHE C C N N 435 PHE O O N N 436 PHE CB C N N 437 PHE CG C Y N 438 PHE CD1 C Y N 439 PHE CD2 C Y N 440 PHE CE1 C Y N 441 PHE CE2 C Y N 442 PHE CZ C Y N 443 PHE OXT O N N 444 PHE H H N N 445 PHE H2 H N N 446 PHE HA H N N 447 PHE HB2 H N N 448 PHE HB3 H N N 449 PHE HD1 H N N 450 PHE HD2 H N N 451 PHE HE1 H N N 452 PHE HE2 H N N 453 PHE HZ H N N 454 PHE HXT H N N 455 PRO N N N N 456 PRO CA C N S 457 PRO C C N N 458 PRO O O N N 459 PRO CB C N N 460 PRO CG C N N 461 PRO CD C N N 462 PRO OXT O N N 463 PRO H H N N 464 PRO HA H N N 465 PRO HB2 H N N 466 PRO HB3 H N N 467 PRO HG2 H N N 468 PRO HG3 H N N 469 PRO HD2 H N N 470 PRO HD3 H N N 471 PRO HXT H N N 472 SER N N N N 473 SER CA C N S 474 SER C C N N 475 SER O O N N 476 SER CB C N N 477 SER OG O N N 478 SER OXT O N N 479 SER H H N N 480 SER H2 H N N 481 SER HA H N N 482 SER HB2 H N N 483 SER HB3 H N N 484 SER HG H N N 485 SER HXT H N N 486 THR N N N N 487 THR CA C N S 488 THR C C N N 489 THR O O N N 490 THR CB C N R 491 THR OG1 O N N 492 THR CG2 C N N 493 THR OXT O N N 494 THR H H N N 495 THR H2 H N N 496 THR HA H N N 497 THR HB H N N 498 THR HG1 H N N 499 THR HG21 H N N 500 THR HG22 H N N 501 THR HG23 H N N 502 THR HXT H N N 503 TRP N N N N 504 TRP CA C N S 505 TRP C C N N 506 TRP O O N N 507 TRP CB C N N 508 TRP CG C Y N 509 TRP CD1 C Y N 510 TRP CD2 C Y N 511 TRP NE1 N Y N 512 TRP CE2 C Y N 513 TRP CE3 C Y N 514 TRP CZ2 C Y N 515 TRP CZ3 C Y N 516 TRP CH2 C Y N 517 TRP OXT O N N 518 TRP H H N N 519 TRP H2 H N N 520 TRP HA H N N 521 TRP HB2 H N N 522 TRP HB3 H N N 523 TRP HD1 H N N 524 TRP HE1 H N N 525 TRP HE3 H N N 526 TRP HZ2 H N N 527 TRP HZ3 H N N 528 TRP HH2 H N N 529 TRP HXT H N N 530 TYR N N N N 531 TYR CA C N S 532 TYR C C N N 533 TYR O O N N 534 TYR CB C N N 535 TYR CG C Y N 536 TYR CD1 C Y N 537 TYR CD2 C Y N 538 TYR CE1 C Y N 539 TYR CE2 C Y N 540 TYR CZ C Y N 541 TYR OH O N N 542 TYR OXT O N N 543 TYR H H N N 544 TYR H2 H N N 545 TYR HA H N N 546 TYR HB2 H N N 547 TYR HB3 H N N 548 TYR HD1 H N N 549 TYR HD2 H N N 550 TYR HE1 H N N 551 TYR HE2 H N N 552 TYR HH H N N 553 TYR HXT H N N 554 VAL N N N N 555 VAL CA C N S 556 VAL C C N N 557 VAL O O N N 558 VAL CB C N N 559 VAL CG1 C N N 560 VAL CG2 C N N 561 VAL OXT O N N 562 VAL H H N N 563 VAL H2 H N N 564 VAL HA H N N 565 VAL HB H N N 566 VAL HG11 H N N 567 VAL HG12 H N N 568 VAL HG13 H N N 569 VAL HG21 H N N 570 VAL HG22 H N N 571 VAL HG23 H N N 572 VAL HXT H N N 573 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4MF O3P P sing N N 1 4MF O3P HOP3 sing N N 2 4MF O2P P sing N N 3 4MF O2P HOP2 sing N N 4 4MF P O1P doub N N 5 4MF P "O5'" sing N N 6 4MF "O5'" "C5'" sing N N 7 4MF "C5'" "C4'" sing N N 8 4MF "C5'" "H5'1" sing N N 9 4MF "C5'" "H5'2" sing N N 10 4MF "C4'" "C3'" sing N N 11 4MF "C4'" "O4'" sing N N 12 4MF "C4'" "H4'" sing N N 13 4MF "C3'" "C2'" sing N N 14 4MF "C3'" "O3'" sing N N 15 4MF "C3'" "H3'" sing N N 16 4MF "O3'" H3T sing N N 17 4MF "C2'" "C1'" sing N N 18 4MF "C2'" "H2'1" sing N N 19 4MF "C2'" "H2'2" sing N N 20 4MF "C1'" N1 sing N N 21 4MF "C1'" "O4'" sing N N 22 4MF "C1'" "H1'" sing N N 23 4MF N1 C2 sing Y N 24 4MF N1 C7A sing Y N 25 4MF C7A C3A sing Y N 26 4MF C7A C7 doub Y N 27 4MF C7 C6 sing Y N 28 4MF C7 H7 sing N N 29 4MF C6 C5 doub Y N 30 4MF C6 H6 sing N N 31 4MF C5 C4 sing Y N 32 4MF C5 H5 sing N N 33 4MF C4 C4M sing N N 34 4MF C4 C3A doub Y N 35 4MF C4M H4M1 sing N N 36 4MF C4M H4M2 sing N N 37 4MF C4M H4M3 sing N N 38 4MF C3A C3 sing Y N 39 4MF C3 C2 doub Y N 40 4MF C3 H3 sing N N 41 4MF C2 H2 sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 DA OP3 P sing N N 125 DA OP3 HOP3 sing N N 126 DA P OP1 doub N N 127 DA P OP2 sing N N 128 DA P "O5'" sing N N 129 DA OP2 HOP2 sing N N 130 DA "O5'" "C5'" sing N N 131 DA "C5'" "C4'" sing N N 132 DA "C5'" "H5'" sing N N 133 DA "C5'" "H5''" sing N N 134 DA "C4'" "O4'" sing N N 135 DA "C4'" "C3'" sing N N 136 DA "C4'" "H4'" sing N N 137 DA "O4'" "C1'" sing N N 138 DA "C3'" "O3'" sing N N 139 DA "C3'" "C2'" sing N N 140 DA "C3'" "H3'" sing N N 141 DA "O3'" "HO3'" sing N N 142 DA "C2'" "C1'" sing N N 143 DA "C2'" "H2'" sing N N 144 DA "C2'" "H2''" sing N N 145 DA "C1'" N9 sing N N 146 DA "C1'" "H1'" sing N N 147 DA N9 C8 sing Y N 148 DA N9 C4 sing Y N 149 DA C8 N7 doub Y N 150 DA C8 H8 sing N N 151 DA N7 C5 sing Y N 152 DA C5 C6 sing Y N 153 DA C5 C4 doub Y N 154 DA C6 N6 sing N N 155 DA C6 N1 doub Y N 156 DA N6 H61 sing N N 157 DA N6 H62 sing N N 158 DA N1 C2 sing Y N 159 DA C2 N3 doub Y N 160 DA C2 H2 sing N N 161 DA N3 C4 sing Y N 162 DC OP3 P sing N N 163 DC OP3 HOP3 sing N N 164 DC P OP1 doub N N 165 DC P OP2 sing N N 166 DC P "O5'" sing N N 167 DC OP2 HOP2 sing N N 168 DC "O5'" "C5'" sing N N 169 DC "C5'" "C4'" sing N N 170 DC "C5'" "H5'" sing N N 171 DC "C5'" "H5''" sing N N 172 DC "C4'" "O4'" sing N N 173 DC "C4'" "C3'" sing N N 174 DC "C4'" "H4'" sing N N 175 DC "O4'" "C1'" sing N N 176 DC "C3'" "O3'" sing N N 177 DC "C3'" "C2'" sing N N 178 DC "C3'" "H3'" sing N N 179 DC "O3'" "HO3'" sing N N 180 DC "C2'" "C1'" sing N N 181 DC "C2'" "H2'" sing N N 182 DC "C2'" "H2''" sing N N 183 DC "C1'" N1 sing N N 184 DC "C1'" "H1'" sing N N 185 DC N1 C2 sing N N 186 DC N1 C6 sing N N 187 DC C2 O2 doub N N 188 DC C2 N3 sing N N 189 DC N3 C4 doub N N 190 DC C4 N4 sing N N 191 DC C4 C5 sing N N 192 DC N4 H41 sing N N 193 DC N4 H42 sing N N 194 DC C5 C6 doub N N 195 DC C5 H5 sing N N 196 DC C6 H6 sing N N 197 DG OP3 P sing N N 198 DG OP3 HOP3 sing N N 199 DG P OP1 doub N N 200 DG P OP2 sing N N 201 DG P "O5'" sing N N 202 DG OP2 HOP2 sing N N 203 DG "O5'" "C5'" sing N N 204 DG "C5'" "C4'" sing N N 205 DG "C5'" "H5'" sing N N 206 DG "C5'" "H5''" sing N N 207 DG "C4'" "O4'" sing N N 208 DG "C4'" "C3'" sing N N 209 DG "C4'" "H4'" sing N N 210 DG "O4'" "C1'" sing N N 211 DG "C3'" "O3'" sing N N 212 DG "C3'" "C2'" sing N N 213 DG "C3'" "H3'" sing N N 214 DG "O3'" "HO3'" sing N N 215 DG "C2'" "C1'" sing N N 216 DG "C2'" "H2'" sing N N 217 DG "C2'" "H2''" sing N N 218 DG "C1'" N9 sing N N 219 DG "C1'" "H1'" sing N N 220 DG N9 C8 sing Y N 221 DG N9 C4 sing Y N 222 DG C8 N7 doub Y N 223 DG C8 H8 sing N N 224 DG N7 C5 sing Y N 225 DG C5 C6 sing N N 226 DG C5 C4 doub Y N 227 DG C6 O6 doub N N 228 DG C6 N1 sing N N 229 DG N1 C2 sing N N 230 DG N1 H1 sing N N 231 DG C2 N2 sing N N 232 DG C2 N3 doub N N 233 DG N2 H21 sing N N 234 DG N2 H22 sing N N 235 DG N3 C4 sing N N 236 DT OP3 P sing N N 237 DT OP3 HOP3 sing N N 238 DT P OP1 doub N N 239 DT P OP2 sing N N 240 DT P "O5'" sing N N 241 DT OP2 HOP2 sing N N 242 DT "O5'" "C5'" sing N N 243 DT "C5'" "C4'" sing N N 244 DT "C5'" "H5'" sing N N 245 DT "C5'" "H5''" sing N N 246 DT "C4'" "O4'" sing N N 247 DT "C4'" "C3'" sing N N 248 DT "C4'" "H4'" sing N N 249 DT "O4'" "C1'" sing N N 250 DT "C3'" "O3'" sing N N 251 DT "C3'" "C2'" sing N N 252 DT "C3'" "H3'" sing N N 253 DT "O3'" "HO3'" sing N N 254 DT "C2'" "C1'" sing N N 255 DT "C2'" "H2'" sing N N 256 DT "C2'" "H2''" sing N N 257 DT "C1'" N1 sing N N 258 DT "C1'" "H1'" sing N N 259 DT N1 C2 sing N N 260 DT N1 C6 sing N N 261 DT C2 O2 doub N N 262 DT C2 N3 sing N N 263 DT N3 C4 sing N N 264 DT N3 H3 sing N N 265 DT C4 O4 doub N N 266 DT C4 C5 sing N N 267 DT C5 C7 sing N N 268 DT C5 C6 doub N N 269 DT C7 H71 sing N N 270 DT C7 H72 sing N N 271 DT C7 H73 sing N N 272 DT C6 H6 sing N N 273 GLN N CA sing N N 274 GLN N H sing N N 275 GLN N H2 sing N N 276 GLN CA C sing N N 277 GLN CA CB sing N N 278 GLN CA HA sing N N 279 GLN C O doub N N 280 GLN C OXT sing N N 281 GLN CB CG sing N N 282 GLN CB HB2 sing N N 283 GLN CB HB3 sing N N 284 GLN CG CD sing N N 285 GLN CG HG2 sing N N 286 GLN CG HG3 sing N N 287 GLN CD OE1 doub N N 288 GLN CD NE2 sing N N 289 GLN NE2 HE21 sing N N 290 GLN NE2 HE22 sing N N 291 GLN OXT HXT sing N N 292 GLU N CA sing N N 293 GLU N H sing N N 294 GLU N H2 sing N N 295 GLU CA C sing N N 296 GLU CA CB sing N N 297 GLU CA HA sing N N 298 GLU C O doub N N 299 GLU C OXT sing N N 300 GLU CB CG sing N N 301 GLU CB HB2 sing N N 302 GLU CB HB3 sing N N 303 GLU CG CD sing N N 304 GLU CG HG2 sing N N 305 GLU CG HG3 sing N N 306 GLU CD OE1 doub N N 307 GLU CD OE2 sing N N 308 GLU OE2 HE2 sing N N 309 GLU OXT HXT sing N N 310 GLY N CA sing N N 311 GLY N H sing N N 312 GLY N H2 sing N N 313 GLY CA C sing N N 314 GLY CA HA2 sing N N 315 GLY CA HA3 sing N N 316 GLY C O doub N N 317 GLY C OXT sing N N 318 GLY OXT HXT sing N N 319 HIS N CA sing N N 320 HIS N H sing N N 321 HIS N H2 sing N N 322 HIS CA C sing N N 323 HIS CA CB sing N N 324 HIS CA HA sing N N 325 HIS C O doub N N 326 HIS C OXT sing N N 327 HIS CB CG sing N N 328 HIS CB HB2 sing N N 329 HIS CB HB3 sing N N 330 HIS CG ND1 sing Y N 331 HIS CG CD2 doub Y N 332 HIS ND1 CE1 doub Y N 333 HIS ND1 HD1 sing N N 334 HIS CD2 NE2 sing Y N 335 HIS CD2 HD2 sing N N 336 HIS CE1 NE2 sing Y N 337 HIS CE1 HE1 sing N N 338 HIS NE2 HE2 sing N N 339 HIS OXT HXT sing N N 340 HOH O H1 sing N N 341 HOH O H2 sing N N 342 ILE N CA sing N N 343 ILE N H sing N N 344 ILE N H2 sing N N 345 ILE CA C sing N N 346 ILE CA CB sing N N 347 ILE CA HA sing N N 348 ILE C O doub N N 349 ILE C OXT sing N N 350 ILE CB CG1 sing N N 351 ILE CB CG2 sing N N 352 ILE CB HB sing N N 353 ILE CG1 CD1 sing N N 354 ILE CG1 HG12 sing N N 355 ILE CG1 HG13 sing N N 356 ILE CG2 HG21 sing N N 357 ILE CG2 HG22 sing N N 358 ILE CG2 HG23 sing N N 359 ILE CD1 HD11 sing N N 360 ILE CD1 HD12 sing N N 361 ILE CD1 HD13 sing N N 362 ILE OXT HXT sing N N 363 LEU N CA sing N N 364 LEU N H sing N N 365 LEU N H2 sing N N 366 LEU CA C sing N N 367 LEU CA CB sing N N 368 LEU CA HA sing N N 369 LEU C O doub N N 370 LEU C OXT sing N N 371 LEU CB CG sing N N 372 LEU CB HB2 sing N N 373 LEU CB HB3 sing N N 374 LEU CG CD1 sing N N 375 LEU CG CD2 sing N N 376 LEU CG HG sing N N 377 LEU CD1 HD11 sing N N 378 LEU CD1 HD12 sing N N 379 LEU CD1 HD13 sing N N 380 LEU CD2 HD21 sing N N 381 LEU CD2 HD22 sing N N 382 LEU CD2 HD23 sing N N 383 LEU OXT HXT sing N N 384 LYS N CA sing N N 385 LYS N H sing N N 386 LYS N H2 sing N N 387 LYS CA C sing N N 388 LYS CA CB sing N N 389 LYS CA HA sing N N 390 LYS C O doub N N 391 LYS C OXT sing N N 392 LYS CB CG sing N N 393 LYS CB HB2 sing N N 394 LYS CB HB3 sing N N 395 LYS CG CD sing N N 396 LYS CG HG2 sing N N 397 LYS CG HG3 sing N N 398 LYS CD CE sing N N 399 LYS CD HD2 sing N N 400 LYS CD HD3 sing N N 401 LYS CE NZ sing N N 402 LYS CE HE2 sing N N 403 LYS CE HE3 sing N N 404 LYS NZ HZ1 sing N N 405 LYS NZ HZ2 sing N N 406 LYS NZ HZ3 sing N N 407 LYS OXT HXT sing N N 408 MET N CA sing N N 409 MET N H sing N N 410 MET N H2 sing N N 411 MET CA C sing N N 412 MET CA CB sing N N 413 MET CA HA sing N N 414 MET C O doub N N 415 MET C OXT sing N N 416 MET CB CG sing N N 417 MET CB HB2 sing N N 418 MET CB HB3 sing N N 419 MET CG SD sing N N 420 MET CG HG2 sing N N 421 MET CG HG3 sing N N 422 MET SD CE sing N N 423 MET CE HE1 sing N N 424 MET CE HE2 sing N N 425 MET CE HE3 sing N N 426 MET OXT HXT sing N N 427 PHE N CA sing N N 428 PHE N H sing N N 429 PHE N H2 sing N N 430 PHE CA C sing N N 431 PHE CA CB sing N N 432 PHE CA HA sing N N 433 PHE C O doub N N 434 PHE C OXT sing N N 435 PHE CB CG sing N N 436 PHE CB HB2 sing N N 437 PHE CB HB3 sing N N 438 PHE CG CD1 doub Y N 439 PHE CG CD2 sing Y N 440 PHE CD1 CE1 sing Y N 441 PHE CD1 HD1 sing N N 442 PHE CD2 CE2 doub Y N 443 PHE CD2 HD2 sing N N 444 PHE CE1 CZ doub Y N 445 PHE CE1 HE1 sing N N 446 PHE CE2 CZ sing Y N 447 PHE CE2 HE2 sing N N 448 PHE CZ HZ sing N N 449 PHE OXT HXT sing N N 450 PRO N CA sing N N 451 PRO N CD sing N N 452 PRO N H sing N N 453 PRO CA C sing N N 454 PRO CA CB sing N N 455 PRO CA HA sing N N 456 PRO C O doub N N 457 PRO C OXT sing N N 458 PRO CB CG sing N N 459 PRO CB HB2 sing N N 460 PRO CB HB3 sing N N 461 PRO CG CD sing N N 462 PRO CG HG2 sing N N 463 PRO CG HG3 sing N N 464 PRO CD HD2 sing N N 465 PRO CD HD3 sing N N 466 PRO OXT HXT sing N N 467 SER N CA sing N N 468 SER N H sing N N 469 SER N H2 sing N N 470 SER CA C sing N N 471 SER CA CB sing N N 472 SER CA HA sing N N 473 SER C O doub N N 474 SER C OXT sing N N 475 SER CB OG sing N N 476 SER CB HB2 sing N N 477 SER CB HB3 sing N N 478 SER OG HG sing N N 479 SER OXT HXT sing N N 480 THR N CA sing N N 481 THR N H sing N N 482 THR N H2 sing N N 483 THR CA C sing N N 484 THR CA CB sing N N 485 THR CA HA sing N N 486 THR C O doub N N 487 THR C OXT sing N N 488 THR CB OG1 sing N N 489 THR CB CG2 sing N N 490 THR CB HB sing N N 491 THR OG1 HG1 sing N N 492 THR CG2 HG21 sing N N 493 THR CG2 HG22 sing N N 494 THR CG2 HG23 sing N N 495 THR OXT HXT sing N N 496 TRP N CA sing N N 497 TRP N H sing N N 498 TRP N H2 sing N N 499 TRP CA C sing N N 500 TRP CA CB sing N N 501 TRP CA HA sing N N 502 TRP C O doub N N 503 TRP C OXT sing N N 504 TRP CB CG sing N N 505 TRP CB HB2 sing N N 506 TRP CB HB3 sing N N 507 TRP CG CD1 doub Y N 508 TRP CG CD2 sing Y N 509 TRP CD1 NE1 sing Y N 510 TRP CD1 HD1 sing N N 511 TRP CD2 CE2 doub Y N 512 TRP CD2 CE3 sing Y N 513 TRP NE1 CE2 sing Y N 514 TRP NE1 HE1 sing N N 515 TRP CE2 CZ2 sing Y N 516 TRP CE3 CZ3 doub Y N 517 TRP CE3 HE3 sing N N 518 TRP CZ2 CH2 doub Y N 519 TRP CZ2 HZ2 sing N N 520 TRP CZ3 CH2 sing Y N 521 TRP CZ3 HZ3 sing N N 522 TRP CH2 HH2 sing N N 523 TRP OXT HXT sing N N 524 TYR N CA sing N N 525 TYR N H sing N N 526 TYR N H2 sing N N 527 TYR CA C sing N N 528 TYR CA CB sing N N 529 TYR CA HA sing N N 530 TYR C O doub N N 531 TYR C OXT sing N N 532 TYR CB CG sing N N 533 TYR CB HB2 sing N N 534 TYR CB HB3 sing N N 535 TYR CG CD1 doub Y N 536 TYR CG CD2 sing Y N 537 TYR CD1 CE1 sing Y N 538 TYR CD1 HD1 sing N N 539 TYR CD2 CE2 doub Y N 540 TYR CD2 HD2 sing N N 541 TYR CE1 CZ doub Y N 542 TYR CE1 HE1 sing N N 543 TYR CE2 CZ sing Y N 544 TYR CE2 HE2 sing N N 545 TYR CZ OH sing N N 546 TYR OH HH sing N N 547 TYR OXT HXT sing N N 548 VAL N CA sing N N 549 VAL N H sing N N 550 VAL N H2 sing N N 551 VAL CA C sing N N 552 VAL CA CB sing N N 553 VAL CA HA sing N N 554 VAL C O doub N N 555 VAL C OXT sing N N 556 VAL CB CG1 sing N N 557 VAL CB CG2 sing N N 558 VAL CB HB sing N N 559 VAL CG1 HG11 sing N N 560 VAL CG1 HG12 sing N N 561 VAL CG1 HG13 sing N N 562 VAL CG2 HG21 sing N N 563 VAL CG2 HG22 sing N N 564 VAL CG2 HG23 sing N N 565 VAL OXT HXT sing N N 566 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2OXM 'double helix' 2OXM 'b-form double helix' 2OXM 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 9 1_555 -0.406 -0.060 -0.005 -6.697 1.707 0.494 1 B_DG3:DC29_C B 3 ? C 29 ? 19 1 1 A DT 3 1_555 B DA 8 1_555 -0.107 -0.212 0.687 1.597 -1.903 3.041 2 B_DT4:DA28_C B 4 ? C 28 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 0.323 -0.027 -0.103 -2.323 -22.749 -0.495 3 B_DA6:DT26_C B 6 ? C 26 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.286 -0.040 -0.086 2.283 -12.383 6.175 4 B_DT7:DA25_C B 7 ? C 25 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 -0.388 -0.454 0.092 -1.224 -13.727 -5.533 5 B_DC8:DG24_C B 8 ? C 24 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.725 -0.337 0.384 -2.439 -12.632 0.508 6 B_DT9:DA23_C B 9 ? C 23 ? 20 1 1 A DT 9 1_555 B DA 2 1_555 -0.264 0.335 0.636 -13.009 -2.279 10.855 7 B_DT10:DA22_C B 10 ? C 22 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 9 1_555 A DT 3 1_555 B DA 8 1_555 0.888 -0.083 3.200 -4.433 -5.657 29.045 0.966 -2.604 2.997 -11.066 8.672 29.902 1 BB_DG3DT4:DA28DC29_CC B 3 ? C 29 ? B 4 ? C 28 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 0.051 -0.369 2.979 1.781 6.120 24.672 -2.413 0.342 2.803 14.026 -4.081 25.470 2 BB_DA6DT7:DA25DT26_CC B 6 ? C 26 ? B 7 ? C 25 ? 1 A DT 6 1_555 B DA 5 1_555 A DC 7 1_555 B DG 4 1_555 -0.339 0.209 3.381 -3.414 1.756 37.318 0.087 0.063 3.403 2.735 5.319 37.507 3 BB_DT7DC8:DG24DA25_CC B 7 ? C 25 ? B 8 ? C 24 ? 1 A DC 7 1_555 B DG 4 1_555 A DT 8 1_555 B DA 3 1_555 1.516 0.068 3.237 4.100 -1.767 36.548 0.351 -1.835 3.374 -2.804 -6.508 36.810 4 BB_DC8DT9:DA23DG24_CC B 8 ? C 24 ? B 9 ? C 23 ? 1 A DT 8 1_555 B DA 3 1_555 A DT 9 1_555 B DA 2 1_555 0.740 -0.390 3.592 0.073 10.713 33.589 -2.371 -1.212 3.318 17.979 -0.123 35.209 5 BB_DT9DT10:DA22DA23_CC B 9 ? C 23 ? B 10 ? C 22 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1EMH _pdbx_initial_refinement_model.details ? #