HEADER TRANSCRIPTION REPRESSOR 15-MAR-07 2P5L TITLE CRYSTAL STRUCTURE OF A DIMER OF N-TERMINAL DOMAINS OF AHRC IN COMPLEX TITLE 2 WITH AN 18BP DNA OPERATOR SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DA COMPND 4 P*DG)-3'); COMPND 5 CHAIN: A, E; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DT COMPND 10 P*DG)-3'); COMPND 11 CHAIN: B, F; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ARGININE REPRESSOR; COMPND 15 CHAIN: C, D, G, H; COMPND 16 FRAGMENT: N-TERMINAL DOMAIN; COMPND 17 SYNONYM: ARGININE HYDROXAMATE RESISTANCE PROTEIN; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED BY MWG-BIOTECH; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SYNTHESIZED BY MWG-BIOTECH; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 9 ORGANISM_TAXID: 1423; SOURCE 10 GENE: ARGR, AHRC; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS DNA-BINDING DOMAIN, WINGED HELIX-TURN-HELIX, ARG BOX, PROTEIN-DNA KEYWDS 2 COMPLEX, TRANSCRIPTION REPRESSOR EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GARNETT,F.MARINCS,S.BAUMBERG,P.G.STOCKLEY,S.E.V.PHILLIPS REVDAT 5 30-AUG-23 2P5L 1 REMARK REVDAT 4 13-JUL-11 2P5L 1 VERSN REVDAT 3 24-FEB-09 2P5L 1 VERSN REVDAT 2 20-MAY-08 2P5L 1 JRNL REVDAT 1 11-MAR-08 2P5L 0 JRNL AUTH J.A.GARNETT,F.MARINCS,S.BAUMBERG,P.G.STOCKLEY,S.E.PHILLIPS JRNL TITL STRUCTURE AND FUNCTION OF THE ARGININE REPRESSOR-OPERATOR JRNL TITL 2 COMPLEX FROM BACILLUS SUBTILIS. JRNL REF J.MOL.BIOL. V. 379 284 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18455186 JRNL DOI 10.1016/J.JMB.2008.03.007 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 23191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1198 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1601 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.4140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2064 REMARK 3 NUCLEIC ACID ATOMS : 1448 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 75.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.409 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.204 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.811 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3804 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5326 ; 1.675 ; 2.460 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 5.263 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;42.998 ;25.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 434 ;18.637 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;23.381 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2255 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1846 ; 0.251 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2397 ; 0.346 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 225 ; 0.211 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.344 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.246 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1285 ; 0.695 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2064 ; 1.173 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3282 ; 0.587 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3262 ; 0.874 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3740 5.9980 -2.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: -0.0759 REMARK 3 T33: 0.2833 T12: -0.0052 REMARK 3 T13: -0.1900 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 8.0140 L22: 5.5660 REMARK 3 L33: 5.1255 L12: 2.6194 REMARK 3 L13: 3.2425 L23: 1.0684 REMARK 3 S TENSOR REMARK 3 S11: 0.4735 S12: -0.1813 S13: -1.1747 REMARK 3 S21: 0.3989 S22: -0.1567 S23: -0.6072 REMARK 3 S31: 0.7554 S32: -0.0122 S33: -0.3168 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 18 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4420 5.8590 -1.5490 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: -0.0776 REMARK 3 T33: 0.2291 T12: -0.0336 REMARK 3 T13: -0.2327 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 9.5640 L22: 6.6010 REMARK 3 L33: 2.0489 L12: 4.1311 REMARK 3 L13: 1.7483 L23: 0.6208 REMARK 3 S TENSOR REMARK 3 S11: 0.3669 S12: -0.0076 S13: -1.2439 REMARK 3 S21: 0.4251 S22: 0.0095 S23: -1.1263 REMARK 3 S31: 0.6529 S32: 0.1201 S33: -0.3764 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 64 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2390 21.6990 -9.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.0455 REMARK 3 T33: 0.1830 T12: 0.0469 REMARK 3 T13: -0.0226 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 11.2697 L22: 4.1420 REMARK 3 L33: 4.8576 L12: 0.5325 REMARK 3 L13: 0.9654 L23: 0.3519 REMARK 3 S TENSOR REMARK 3 S11: 0.2792 S12: 0.6529 S13: 0.0117 REMARK 3 S21: 0.0562 S22: -0.1662 S23: -0.4470 REMARK 3 S31: -0.0201 S32: 0.4921 S33: -0.1130 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 64 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0830 11.8520 -3.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.1685 T22: 0.1251 REMARK 3 T33: 0.1305 T12: -0.0266 REMARK 3 T13: -0.0105 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 6.4551 L22: 6.4098 REMARK 3 L33: 3.1385 L12: 3.5890 REMARK 3 L13: 0.3085 L23: -0.0875 REMARK 3 S TENSOR REMARK 3 S11: 0.2963 S12: -0.1328 S13: -0.0715 REMARK 3 S21: 0.4881 S22: -0.3271 S23: 0.2986 REMARK 3 S31: 0.5101 S32: -0.4200 S33: 0.0308 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 18 REMARK 3 ORIGIN FOR THE GROUP (A): -34.5580 -17.7710 -30.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.6032 REMARK 3 T33: 0.4183 T12: -0.2416 REMARK 3 T13: -0.0142 T23: -0.2047 REMARK 3 L TENSOR REMARK 3 L11: 2.2956 L22: 1.0708 REMARK 3 L33: 7.3923 L12: 0.2286 REMARK 3 L13: 2.2737 L23: 0.4384 REMARK 3 S TENSOR REMARK 3 S11: 0.3662 S12: -0.2427 S13: -0.0713 REMARK 3 S21: 0.2266 S22: -0.5101 S23: 0.4979 REMARK 3 S31: 0.3057 S32: -1.1426 S33: 0.1440 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2 F 18 REMARK 3 ORIGIN FOR THE GROUP (A): -34.5920 -19.9480 -30.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.6417 REMARK 3 T33: 0.3709 T12: -0.3304 REMARK 3 T13: 0.0023 T23: -0.1088 REMARK 3 L TENSOR REMARK 3 L11: 5.2810 L22: 1.0825 REMARK 3 L33: 7.5821 L12: 0.8230 REMARK 3 L13: 4.0870 L23: 1.7281 REMARK 3 S TENSOR REMARK 3 S11: 0.4416 S12: -0.9223 S13: -0.1508 REMARK 3 S21: 0.4465 S22: -0.5116 S23: 0.2389 REMARK 3 S31: 0.7496 S32: -1.5551 S33: 0.0701 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 2 G 64 REMARK 3 ORIGIN FOR THE GROUP (A): -36.5670 -13.1750 -47.8560 REMARK 3 T TENSOR REMARK 3 T11: 0.0142 T22: 0.3545 REMARK 3 T33: 0.1361 T12: 0.0210 REMARK 3 T13: -0.0986 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 7.0123 L22: 7.5122 REMARK 3 L33: 7.8389 L12: 2.7793 REMARK 3 L13: -0.1081 L23: -0.4716 REMARK 3 S TENSOR REMARK 3 S11: 0.3059 S12: 0.3795 S13: 0.1803 REMARK 3 S21: -0.2260 S22: -0.0069 S23: 0.8461 REMARK 3 S31: 0.1296 S32: -1.1457 S33: -0.2990 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 64 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8690 -19.4100 -34.1570 REMARK 3 T TENSOR REMARK 3 T11: 0.1002 T22: 0.1002 REMARK 3 T33: 0.0931 T12: -0.0312 REMARK 3 T13: 0.0016 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 5.8767 L22: 6.1377 REMARK 3 L33: 9.6411 L12: -0.2872 REMARK 3 L13: -0.9956 L23: 1.9344 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.1193 S13: -0.3264 REMARK 3 S21: 0.4667 S22: -0.0362 S23: -0.1524 REMARK 3 S31: 0.6856 S32: 0.3696 S33: 0.0129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 24.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : 0.40600 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: N-TERMINAL DOMAIN OF AHRC (2P5K) AND 7BP OF DNA REMARK 200 FROM THE PURINE REPRESSOR-OPERATOR COMPLEX (1JFS) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M AMMONIUM SULPHATE, 0.1M HEPES, REMARK 280 0.1M SODIUM CHLORIDE, PH 7.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K, PH 7.10 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.55250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.38500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.55250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.38500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 69.55250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.38500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.61500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.38500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 69.55250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.61500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 1 OF THE 2 COMPLEXES (CHAINS A,B,C,D OR E,F,G,H) IS THE REMARK 300 BIOLOGICAL PROTEIN-DNA COMPLEX REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC F 1 REMARK 465 MET C 1 REMARK 465 MET G 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 4 O3' DG A 4 C3' -0.037 REMARK 500 DA A 11 O3' DA A 11 C3' -0.046 REMARK 500 DG A 18 N3 DG A 18 C4 0.043 REMARK 500 DA E 11 O3' DA E 11 C3' -0.047 REMARK 500 DA F 12 O3' DA F 12 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 3 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DA A 8 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DA A 9 O4' - C1' - N9 ANGL. DEV. = -7.1 DEGREES REMARK 500 DT A 14 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA A 16 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA A 17 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG A 18 N9 - C4 - C5 ANGL. DEV. = -2.9 DEGREES REMARK 500 DG A 18 N3 - C4 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC B 1 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT B 3 N3 - C4 - O4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT B 7 C2 - N3 - C4 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT B 8 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT B 9 O4' - C1' - N1 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT B 9 N3 - C2 - O2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DA B 12 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT B 13 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT B 14 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA B 16 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG B 18 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA E 2 N1 - C6 - N6 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA E 9 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA E 10 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT E 14 O4' - C1' - N1 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG F 4 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 DA F 5 O4' - C1' - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT F 8 C2 - N3 - C4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT F 10 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR G 55 -83.83 -103.26 REMARK 500 ASN G 56 -61.77 -133.49 REMARK 500 ASN G 57 59.91 -113.40 REMARK 500 ASN H 2 71.86 -106.26 REMARK 500 ASN H 56 33.79 -59.89 REMARK 500 ASN H 57 -22.29 -150.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P5K RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF AHRC REMARK 900 RELATED ID: 2P5L RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN HEXAMER OF AHRC BOUND WITH L-ARGININE DBREF 2P5L C 1 64 UNP P17893 ARGR_BACSU 1 64 DBREF 2P5L D 1 64 UNP P17893 ARGR_BACSU 1 64 DBREF 2P5L G 1 64 UNP P17893 ARGR_BACSU 1 64 DBREF 2P5L H 1 64 UNP P17893 ARGR_BACSU 1 64 DBREF 2P5L A 1 18 PDB 2P5L 2P5L 1 18 DBREF 2P5L E 1 18 PDB 2P5L 2P5L 1 18 DBREF 2P5L B 1 18 PDB 2P5L 2P5L 1 18 DBREF 2P5L F 1 18 PDB 2P5L 2P5L 1 18 SEQRES 1 A 18 DC DA DT DG DA DA DT DA DA DA DA DA DT SEQRES 2 A 18 DT DC DA DA DG SEQRES 1 B 18 DC DT DT DG DA DA DT DT DT DT DT DA DT SEQRES 2 B 18 DT DC DA DT DG SEQRES 1 E 18 DC DA DT DG DA DA DT DA DA DA DA DA DT SEQRES 2 E 18 DT DC DA DA DG SEQRES 1 F 18 DC DT DT DG DA DA DT DT DT DT DT DA DT SEQRES 2 F 18 DT DC DA DT DG SEQRES 1 C 64 MET ASN LYS GLY GLN ARG HIS ILE LYS ILE ARG GLU ILE SEQRES 2 C 64 ILE THR SER ASN GLU ILE GLU THR GLN ASP GLU LEU VAL SEQRES 3 C 64 ASP MET LEU LYS GLN ASP GLY TYR LYS VAL THR GLN ALA SEQRES 4 C 64 THR VAL SER ARG ASP ILE LYS GLU LEU HIS LEU VAL LYS SEQRES 5 C 64 VAL PRO THR ASN ASN GLY SER TYR LYS TYR SER LEU SEQRES 1 D 64 MET ASN LYS GLY GLN ARG HIS ILE LYS ILE ARG GLU ILE SEQRES 2 D 64 ILE THR SER ASN GLU ILE GLU THR GLN ASP GLU LEU VAL SEQRES 3 D 64 ASP MET LEU LYS GLN ASP GLY TYR LYS VAL THR GLN ALA SEQRES 4 D 64 THR VAL SER ARG ASP ILE LYS GLU LEU HIS LEU VAL LYS SEQRES 5 D 64 VAL PRO THR ASN ASN GLY SER TYR LYS TYR SER LEU SEQRES 1 G 64 MET ASN LYS GLY GLN ARG HIS ILE LYS ILE ARG GLU ILE SEQRES 2 G 64 ILE THR SER ASN GLU ILE GLU THR GLN ASP GLU LEU VAL SEQRES 3 G 64 ASP MET LEU LYS GLN ASP GLY TYR LYS VAL THR GLN ALA SEQRES 4 G 64 THR VAL SER ARG ASP ILE LYS GLU LEU HIS LEU VAL LYS SEQRES 5 G 64 VAL PRO THR ASN ASN GLY SER TYR LYS TYR SER LEU SEQRES 1 H 64 MET ASN LYS GLY GLN ARG HIS ILE LYS ILE ARG GLU ILE SEQRES 2 H 64 ILE THR SER ASN GLU ILE GLU THR GLN ASP GLU LEU VAL SEQRES 3 H 64 ASP MET LEU LYS GLN ASP GLY TYR LYS VAL THR GLN ALA SEQRES 4 H 64 THR VAL SER ARG ASP ILE LYS GLU LEU HIS LEU VAL LYS SEQRES 5 H 64 VAL PRO THR ASN ASN GLY SER TYR LYS TYR SER LEU HET SO4 D 103 5 HET SO4 G 102 5 HET SO4 H 101 5 HET SO4 H 104 5 HET SO4 H 105 5 HETNAM SO4 SULFATE ION FORMUL 9 SO4 5(O4 S 2-) FORMUL 14 HOH *13(H2 O) HELIX 1 1 ASN C 2 SER C 16 1 15 HELIX 2 2 THR C 21 ASP C 32 1 12 HELIX 3 3 THR C 37 HIS C 49 1 13 HELIX 4 4 ASN D 2 ASN D 17 1 16 HELIX 5 5 THR D 21 ASP D 32 1 12 HELIX 6 6 THR D 37 HIS D 49 1 13 HELIX 7 7 ASN G 2 ASN G 17 1 16 HELIX 8 8 THR G 21 ASP G 32 1 12 HELIX 9 9 THR G 37 LEU G 48 1 12 HELIX 10 10 ASN H 2 ASN H 17 1 16 HELIX 11 11 THR H 21 ASP H 32 1 12 HELIX 12 12 THR H 37 HIS H 49 1 13 SHEET 1 A 2 VAL C 51 PRO C 54 0 SHEET 2 A 2 TYR C 60 SER C 63 -1 O LYS C 61 N VAL C 53 SHEET 1 B 2 VAL D 51 PRO D 54 0 SHEET 2 B 2 TYR D 60 SER D 63 -1 O LYS D 61 N VAL D 53 SHEET 1 C 2 VAL G 51 PRO G 54 0 SHEET 2 C 2 TYR G 60 SER G 63 -1 O LYS G 61 N VAL G 53 SHEET 1 D 2 VAL H 51 PRO H 54 0 SHEET 2 D 2 TYR H 60 SER H 63 -1 O SER H 63 N VAL H 51 SITE 1 AC1 3 HIS H 7 ARG H 11 LEU H 48 SITE 1 AC2 3 HIS G 7 ARG G 11 LEU G 48 SITE 1 AC3 3 THR D 55 ASN D 56 ASN D 57 SITE 1 AC4 5 LYS C 9 TYR C 34 THR H 55 ASN H 56 SITE 2 AC4 5 LYS H 61 SITE 1 AC5 4 ASN H 2 LYS H 3 GLY H 4 GLN H 5 CRYST1 139.105 118.770 121.230 90.00 90.00 90.00 I 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007189 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008249 0.00000