data_2PG3 # _entry.id 2PG3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PG3 pdb_00002pg3 10.2210/pdb2pg3/pdb RCSB RCSB042339 ? ? WWPDB D_1000042339 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 371338 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2PG3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-04-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of hypothetical protein (YP_049261.1) from Erwinia carotovora subsp. atroseptica SCRI1043 at 2.40 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2PG3 _cell.length_a 78.154 _cell.length_b 78.154 _cell.length_c 77.755 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PG3 _symmetry.Int_Tables_number 92 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Queuosine biosynthesis protein queC' 25585.490 1 3.5.-.- ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)KRAVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATSSLT RDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIR FETPL(MSE)WLNKAETWALADYYQQLDTVRYHTLTCYNGIKGDGCGQCAACHLRANGLAQYQKDAATV(MSE)ASLKQK VGLR ; _entity_poly.pdbx_seq_one_letter_code_can ;GMKRAVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATSSLTRDSI PVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETP LMWLNKAETWALADYYQQLDTVRYHTLTCYNGIKGDGCGQCAACHLRANGLAQYQKDAATVMASLKQKVGLR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 371338 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 LYS n 1 4 ARG n 1 5 ALA n 1 6 VAL n 1 7 VAL n 1 8 VAL n 1 9 PHE n 1 10 SER n 1 11 GLY n 1 12 GLY n 1 13 GLN n 1 14 ASP n 1 15 SER n 1 16 THR n 1 17 THR n 1 18 CYS n 1 19 LEU n 1 20 ILE n 1 21 GLN n 1 22 ALA n 1 23 LEU n 1 24 GLN n 1 25 ASP n 1 26 TYR n 1 27 ASP n 1 28 ASP n 1 29 VAL n 1 30 HIS n 1 31 CYS n 1 32 ILE n 1 33 THR n 1 34 PHE n 1 35 ASP n 1 36 TYR n 1 37 GLY n 1 38 GLN n 1 39 ARG n 1 40 HIS n 1 41 ARG n 1 42 ALA n 1 43 GLU n 1 44 ILE n 1 45 GLU n 1 46 VAL n 1 47 ALA n 1 48 GLN n 1 49 GLU n 1 50 LEU n 1 51 SER n 1 52 GLN n 1 53 LYS n 1 54 LEU n 1 55 GLY n 1 56 ALA n 1 57 ALA n 1 58 ALA n 1 59 HIS n 1 60 LYS n 1 61 VAL n 1 62 LEU n 1 63 ASP n 1 64 VAL n 1 65 GLY n 1 66 LEU n 1 67 LEU n 1 68 ASN n 1 69 GLU n 1 70 LEU n 1 71 ALA n 1 72 THR n 1 73 SER n 1 74 SER n 1 75 LEU n 1 76 THR n 1 77 ARG n 1 78 ASP n 1 79 SER n 1 80 ILE n 1 81 PRO n 1 82 VAL n 1 83 PRO n 1 84 ASP n 1 85 TYR n 1 86 ASP n 1 87 ALA n 1 88 ASN n 1 89 ALA n 1 90 GLN n 1 91 GLY n 1 92 ILE n 1 93 PRO n 1 94 ASN n 1 95 THR n 1 96 PHE n 1 97 VAL n 1 98 PRO n 1 99 GLY n 1 100 ARG n 1 101 ASN n 1 102 ILE n 1 103 LEU n 1 104 PHE n 1 105 LEU n 1 106 THR n 1 107 LEU n 1 108 ALA n 1 109 SER n 1 110 ILE n 1 111 TYR n 1 112 ALA n 1 113 TYR n 1 114 GLN n 1 115 VAL n 1 116 GLY n 1 117 ALA n 1 118 GLU n 1 119 ALA n 1 120 VAL n 1 121 ILE n 1 122 THR n 1 123 GLY n 1 124 VAL n 1 125 CYS n 1 126 GLU n 1 127 THR n 1 128 ASP n 1 129 PHE n 1 130 SER n 1 131 GLY n 1 132 TYR n 1 133 PRO n 1 134 ASP n 1 135 CYS n 1 136 ARG n 1 137 ASP n 1 138 GLU n 1 139 PHE n 1 140 VAL n 1 141 LYS n 1 142 ALA n 1 143 LEU n 1 144 ASN n 1 145 GLN n 1 146 ALA n 1 147 ILE n 1 148 VAL n 1 149 LEU n 1 150 GLY n 1 151 ILE n 1 152 ALA n 1 153 ARG n 1 154 ASP n 1 155 ILE n 1 156 ARG n 1 157 PHE n 1 158 GLU n 1 159 THR n 1 160 PRO n 1 161 LEU n 1 162 MSE n 1 163 TRP n 1 164 LEU n 1 165 ASN n 1 166 LYS n 1 167 ALA n 1 168 GLU n 1 169 THR n 1 170 TRP n 1 171 ALA n 1 172 LEU n 1 173 ALA n 1 174 ASP n 1 175 TYR n 1 176 TYR n 1 177 GLN n 1 178 GLN n 1 179 LEU n 1 180 ASP n 1 181 THR n 1 182 VAL n 1 183 ARG n 1 184 TYR n 1 185 HIS n 1 186 THR n 1 187 LEU n 1 188 THR n 1 189 CYS n 1 190 TYR n 1 191 ASN n 1 192 GLY n 1 193 ILE n 1 194 LYS n 1 195 GLY n 1 196 ASP n 1 197 GLY n 1 198 CYS n 1 199 GLY n 1 200 GLN n 1 201 CYS n 1 202 ALA n 1 203 ALA n 1 204 CYS n 1 205 HIS n 1 206 LEU n 1 207 ARG n 1 208 ALA n 1 209 ASN n 1 210 GLY n 1 211 LEU n 1 212 ALA n 1 213 GLN n 1 214 TYR n 1 215 GLN n 1 216 LYS n 1 217 ASP n 1 218 ALA n 1 219 ALA n 1 220 THR n 1 221 VAL n 1 222 MSE n 1 223 ALA n 1 224 SER n 1 225 LEU n 1 226 LYS n 1 227 GLN n 1 228 LYS n 1 229 VAL n 1 230 GLY n 1 231 LEU n 1 232 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pectobacterium _entity_src_gen.pdbx_gene_src_gene 'YP_049261.1, queC, ECA1155' _entity_src_gen.gene_src_species 'Pectobacterium atrosepticum' _entity_src_gen.gene_src_strain 'SCRI 1043' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pectobacterium atrosepticum SCRI1043' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 218491 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-672 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code QUEC_ERWCT _struct_ref.pdbx_db_accession Q6D820 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKRAVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATSSLTRDSIP VPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPL MWLNKAETWALADYYQQLDTVRYHTLTCYNGIKGDGCGQCAACHLRANGLAQYQKDAATVMASLKQKVGLR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PG3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 232 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6D820 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 231 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 231 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PG3 GLY A 1 ? UNP Q6D820 ? ? 'expression tag' 0 1 1 2PG3 MSE A 2 ? UNP Q6D820 MET 1 'modified residue' 1 2 1 2PG3 MSE A 162 ? UNP Q6D820 MET 161 'modified residue' 161 3 1 2PG3 MSE A 222 ? UNP Q6D820 MET 221 'modified residue' 221 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2PG3 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.1 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 0.2M Li3Citrate, 20.0% PEG 3350, No Buffer pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2007-03-11 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97917 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97917 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 2PG3 _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 27.566 _reflns.number_obs 9920 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_netI_over_sigmaI 6.400 _reflns.pdbx_Rsym_value 0.086 _reflns.pdbx_redundancy 13.500 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.40 2.46 ? 8537 ? 0.649 1.2 0.649 ? 12.00 ? 710 100.00 1 1 2.46 2.53 ? 9677 ? 0.539 1.4 0.539 ? 13.90 ? 696 100.00 2 1 2.53 2.60 ? 9577 ? 0.397 2.0 0.397 ? 14.00 ? 682 100.00 3 1 2.60 2.68 ? 9213 ? 0.336 2.3 0.336 ? 13.90 ? 662 100.00 4 1 2.68 2.77 ? 8893 ? 0.259 3.0 0.259 ? 13.90 ? 638 100.00 5 1 2.77 2.87 ? 8456 ? 0.229 3.4 0.229 ? 13.90 ? 607 100.00 6 1 2.87 2.98 ? 8583 ? 0.178 4.3 0.178 ? 14.00 ? 615 100.00 7 1 2.98 3.10 ? 7828 ? 0.14 5.3 0.14 ? 13.80 ? 568 100.00 8 1 3.10 3.24 ? 7951 ? 0.118 6.1 0.118 ? 13.80 ? 575 100.00 9 1 3.24 3.39 ? 7315 ? 0.095 7.5 0.095 ? 13.80 ? 531 100.00 10 1 3.39 3.58 ? 6904 ? 0.084 8.3 0.084 ? 13.60 ? 507 100.00 11 1 3.58 3.79 ? 6732 ? 0.068 10.0 0.068 ? 13.70 ? 491 100.00 12 1 3.79 4.06 ? 6177 ? 0.064 10.3 0.064 ? 13.60 ? 454 100.00 13 1 4.06 4.38 ? 5749 ? 0.058 11.2 0.058 ? 13.30 ? 432 100.00 14 1 4.38 4.80 ? 5363 ? 0.06 10.5 0.06 ? 13.40 ? 401 100.00 15 1 4.80 5.37 ? 4647 ? 0.058 10.1 0.058 ? 12.90 ? 359 100.00 16 1 5.37 6.20 ? 4294 ? 0.064 10.0 0.064 ? 12.70 ? 337 100.00 17 1 6.20 7.59 ? 3506 ? 0.067 9.5 0.067 ? 12.30 ? 284 100.00 18 1 7.59 10.73 ? 2745 ? 0.047 12.4 0.047 ? 11.80 ? 233 100.00 19 1 10.73 27.63 ? 1304 ? 0.056 10.9 0.056 ? 9.40 ? 138 94.40 20 1 # _refine.entry_id 2PG3 _refine.ls_d_res_high 2.400 _refine.ls_d_res_low 27.566 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.880 _refine.ls_number_reflns_obs 9883 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 4. THERE IS UNMODELED DENSITY NEAR RESIDUE A9. 5. ZINC WAS MODELED BASED ON GEOMETRY AND COORDINATION ENVIRONMENT, AND CONFIRMED WITH X-RAY FLUORESCENCE AND ANOMALOUS DIFFERENCE FOURIER EXPERIMENTS. ; _refine.ls_R_factor_all 0.188 _refine.ls_R_factor_R_work 0.186 _refine.ls_R_factor_R_free 0.223 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 475 _refine.B_iso_mean 48.553 _refine.aniso_B[1][1] -1.350 _refine.aniso_B[2][2] -1.350 _refine.aniso_B[3][3] 2.690 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.pdbx_overall_ESU_R 0.366 _refine.pdbx_overall_ESU_R_Free 0.231 _refine.overall_SU_ML 0.182 _refine.overall_SU_B 15.672 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.188 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1666 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1700 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 27.566 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1699 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1538 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2309 1.592 1.950 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3547 0.876 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 219 7.207 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 72 38.132 24.444 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 266 14.549 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 18.732 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 271 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1917 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 341 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 337 0.212 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1449 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 842 0.184 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 988 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 48 0.153 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 9 0.180 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 45 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 3 0.056 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1181 2.271 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 455 0.531 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1739 3.373 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 669 5.647 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 570 7.573 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.860 _refine_ls_shell.number_reflns_R_work 683 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.214 _refine_ls_shell.R_factor_R_free 0.303 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 710 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PG3 _struct.title ;Crystal structure of a Queuosine biosynthesis protein queC (ECA1155) from Erwinia carotovora subsp. atroseptica SCRI1043 at 2.40 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_049261.1, hypothetical protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 2PG3 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 12 ? TYR A 26 ? GLY A 11 TYR A 25 1 ? 15 HELX_P HELX_P2 2 HIS A 40 ? GLY A 55 ? HIS A 39 GLY A 54 1 ? 16 HELX_P HELX_P3 3 GLY A 65 ? LEU A 70 ? GLY A 64 LEU A 69 1 ? 6 HELX_P HELX_P4 4 ALA A 71 ? ASP A 78 ? ALA A 70 ASP A 77 1 ? 8 HELX_P HELX_P5 5 GLY A 99 ? GLY A 116 ? GLY A 98 GLY A 115 1 ? 18 HELX_P HELX_P6 6 TYR A 132 ? CYS A 135 ? TYR A 131 CYS A 134 5 ? 4 HELX_P HELX_P7 7 ARG A 136 ? ALA A 152 ? ARG A 135 ALA A 151 1 ? 17 HELX_P HELX_P8 8 ASN A 165 ? TYR A 176 ? ASN A 164 TYR A 175 1 ? 12 HELX_P HELX_P9 9 GLN A 178 ? THR A 186 ? GLN A 177 THR A 185 1 ? 9 HELX_P HELX_P10 10 CYS A 201 ? ASP A 217 ? CYS A 200 ASP A 216 1 ? 17 HELX_P HELX_P11 11 ASP A 217 ? GLY A 230 ? ASP A 216 GLY A 229 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A LYS 3 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A LEU 161 C ? ? ? 1_555 A MSE 162 N ? ? A LEU 160 A MSE 161 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A MSE 162 C ? ? ? 1_555 A TRP 163 N ? ? A MSE 161 A TRP 162 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A VAL 221 C ? ? ? 1_555 A MSE 222 N ? ? A VAL 220 A MSE 221 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? A MSE 222 C ? ? ? 1_555 A ALA 223 N ? ? A MSE 221 A ALA 222 1_555 ? ? ? ? ? ? ? 1.323 ? ? metalc1 metalc ? ? A CYS 189 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 188 A ZN 300 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc2 metalc ? ? A CYS 198 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 197 A ZN 300 1_555 ? ? ? ? ? ? ? 2.372 ? ? metalc3 metalc ? ? A CYS 201 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 200 A ZN 300 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc4 metalc ? ? A CYS 204 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 203 A ZN 300 1_555 ? ? ? ? ? ? ? 2.309 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 58 ? ASP A 63 ? ALA A 57 ASP A 62 A 2 ASP A 28 ? ASP A 35 ? ASP A 27 ASP A 34 A 3 ARG A 4 ? VAL A 8 ? ARG A 3 VAL A 7 A 4 ALA A 119 ? ILE A 121 ? ALA A 118 ILE A 120 A 5 ARG A 156 ? GLU A 158 ? ARG A 155 GLU A 157 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 62 ? O LEU A 61 N THR A 33 ? N THR A 32 A 2 3 O HIS A 30 ? O HIS A 29 N ALA A 5 ? N ALA A 4 A 3 4 N VAL A 6 ? N VAL A 5 O ILE A 121 ? O ILE A 120 A 4 5 N VAL A 120 ? N VAL A 119 O GLU A 158 ? O GLU A 157 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 189 ? CYS A 188 . ? 1_555 ? 2 AC1 4 CYS A 198 ? CYS A 197 . ? 1_555 ? 3 AC1 4 CYS A 201 ? CYS A 200 . ? 1_555 ? 4 AC1 4 CYS A 204 ? CYS A 203 . ? 1_555 ? # _atom_sites.entry_id 2PG3 _atom_sites.fract_transf_matrix[1][1] 0.01280 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01280 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01286 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 ARG 4 3 3 ARG ARG A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 VAL 7 6 6 VAL VAL A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 SER 10 9 9 SER SER A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 GLY 12 11 11 GLY GLY A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 THR 17 16 16 THR THR A . n A 1 18 CYS 18 17 17 CYS CYS A . n A 1 19 LEU 19 18 18 LEU LEU A . n A 1 20 ILE 20 19 19 ILE ILE A . n A 1 21 GLN 21 20 20 GLN GLN A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 GLN 24 23 23 GLN GLN A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 TYR 26 25 25 TYR TYR A . n A 1 27 ASP 27 26 26 ASP ASP A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 HIS 30 29 29 HIS HIS A . n A 1 31 CYS 31 30 30 CYS CYS A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 PHE 34 33 33 PHE PHE A . n A 1 35 ASP 35 34 34 ASP ASP A . n A 1 36 TYR 36 35 35 TYR TYR A . n A 1 37 GLY 37 36 36 GLY GLY A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 ARG 39 38 38 ARG ARG A . n A 1 40 HIS 40 39 39 HIS HIS A . n A 1 41 ARG 41 40 40 ARG ARG A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 ILE 44 43 43 ILE ILE A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 GLN 48 47 47 GLN GLN A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 SER 51 50 50 SER SER A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 GLY 55 54 54 GLY GLY A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 HIS 59 58 58 HIS HIS A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 SER 73 72 72 SER SER A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 ARG 77 76 76 ARG ARG A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 SER 79 78 78 SER SER A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 PRO 81 80 80 PRO PRO A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 PRO 83 82 82 PRO PRO A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 TYR 85 84 ? ? ? A . n A 1 86 ASP 86 85 ? ? ? A . n A 1 87 ALA 87 86 ? ? ? A . n A 1 88 ASN 88 87 ? ? ? A . n A 1 89 ALA 89 88 ? ? ? A . n A 1 90 GLN 90 89 ? ? ? A . n A 1 91 GLY 91 90 ? ? ? A . n A 1 92 ILE 92 91 ? ? ? A . n A 1 93 PRO 93 92 ? ? ? A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 PHE 96 95 95 PHE PHE A . n A 1 97 VAL 97 96 96 VAL VAL A . n A 1 98 PRO 98 97 97 PRO PRO A . n A 1 99 GLY 99 98 98 GLY GLY A . n A 1 100 ARG 100 99 99 ARG ARG A . n A 1 101 ASN 101 100 100 ASN ASN A . n A 1 102 ILE 102 101 101 ILE ILE A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 PHE 104 103 103 PHE PHE A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 SER 109 108 108 SER SER A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 TYR 111 110 110 TYR TYR A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 TYR 113 112 112 TYR TYR A . n A 1 114 GLN 114 113 113 GLN GLN A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 ALA 117 116 116 ALA ALA A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 ALA 119 118 118 ALA ALA A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 ILE 121 120 120 ILE ILE A . n A 1 122 THR 122 121 121 THR THR A . n A 1 123 GLY 123 122 122 GLY GLY A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 CYS 125 124 124 CYS CYS A . n A 1 126 GLU 126 125 125 GLU GLU A . n A 1 127 THR 127 126 126 THR THR A . n A 1 128 ASP 128 127 127 ASP ASP A . n A 1 129 PHE 129 128 128 PHE PHE A . n A 1 130 SER 130 129 129 SER SER A . n A 1 131 GLY 131 130 130 GLY GLY A . n A 1 132 TYR 132 131 131 TYR TYR A . n A 1 133 PRO 133 132 132 PRO PRO A . n A 1 134 ASP 134 133 133 ASP ASP A . n A 1 135 CYS 135 134 134 CYS CYS A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 ASP 137 136 136 ASP ASP A . n A 1 138 GLU 138 137 137 GLU GLU A . n A 1 139 PHE 139 138 138 PHE PHE A . n A 1 140 VAL 140 139 139 VAL VAL A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 ALA 142 141 141 ALA ALA A . n A 1 143 LEU 143 142 142 LEU LEU A . n A 1 144 ASN 144 143 143 ASN ASN A . n A 1 145 GLN 145 144 144 GLN GLN A . n A 1 146 ALA 146 145 145 ALA ALA A . n A 1 147 ILE 147 146 146 ILE ILE A . n A 1 148 VAL 148 147 147 VAL VAL A . n A 1 149 LEU 149 148 148 LEU LEU A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 ILE 151 150 150 ILE ILE A . n A 1 152 ALA 152 151 151 ALA ALA A . n A 1 153 ARG 153 152 152 ARG ARG A . n A 1 154 ASP 154 153 153 ASP ASP A . n A 1 155 ILE 155 154 154 ILE ILE A . n A 1 156 ARG 156 155 155 ARG ARG A . n A 1 157 PHE 157 156 156 PHE PHE A . n A 1 158 GLU 158 157 157 GLU GLU A . n A 1 159 THR 159 158 158 THR THR A . n A 1 160 PRO 160 159 159 PRO PRO A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 MSE 162 161 161 MSE MSE A . n A 1 163 TRP 163 162 162 TRP TRP A . n A 1 164 LEU 164 163 163 LEU LEU A . n A 1 165 ASN 165 164 164 ASN ASN A . n A 1 166 LYS 166 165 165 LYS LYS A . n A 1 167 ALA 167 166 166 ALA ALA A . n A 1 168 GLU 168 167 167 GLU GLU A . n A 1 169 THR 169 168 168 THR THR A . n A 1 170 TRP 170 169 169 TRP TRP A . n A 1 171 ALA 171 170 170 ALA ALA A . n A 1 172 LEU 172 171 171 LEU LEU A . n A 1 173 ALA 173 172 172 ALA ALA A . n A 1 174 ASP 174 173 173 ASP ASP A . n A 1 175 TYR 175 174 174 TYR TYR A . n A 1 176 TYR 176 175 175 TYR TYR A . n A 1 177 GLN 177 176 176 GLN GLN A . n A 1 178 GLN 178 177 177 GLN GLN A . n A 1 179 LEU 179 178 178 LEU LEU A . n A 1 180 ASP 180 179 179 ASP ASP A . n A 1 181 THR 181 180 180 THR THR A . n A 1 182 VAL 182 181 181 VAL VAL A . n A 1 183 ARG 183 182 182 ARG ARG A . n A 1 184 TYR 184 183 183 TYR TYR A . n A 1 185 HIS 185 184 184 HIS HIS A . n A 1 186 THR 186 185 185 THR THR A . n A 1 187 LEU 187 186 186 LEU LEU A . n A 1 188 THR 188 187 187 THR THR A . n A 1 189 CYS 189 188 188 CYS CYS A . n A 1 190 TYR 190 189 189 TYR TYR A . n A 1 191 ASN 191 190 190 ASN ASN A . n A 1 192 GLY 192 191 191 GLY GLY A . n A 1 193 ILE 193 192 192 ILE ILE A . n A 1 194 LYS 194 193 193 LYS LYS A . n A 1 195 GLY 195 194 194 GLY GLY A . n A 1 196 ASP 196 195 195 ASP ASP A . n A 1 197 GLY 197 196 196 GLY GLY A . n A 1 198 CYS 198 197 197 CYS CYS A . n A 1 199 GLY 199 198 198 GLY GLY A . n A 1 200 GLN 200 199 199 GLN GLN A . n A 1 201 CYS 201 200 200 CYS CYS A . n A 1 202 ALA 202 201 201 ALA ALA A . n A 1 203 ALA 203 202 202 ALA ALA A . n A 1 204 CYS 204 203 203 CYS CYS A . n A 1 205 HIS 205 204 204 HIS HIS A . n A 1 206 LEU 206 205 205 LEU LEU A . n A 1 207 ARG 207 206 206 ARG ARG A . n A 1 208 ALA 208 207 207 ALA ALA A . n A 1 209 ASN 209 208 208 ASN ASN A . n A 1 210 GLY 210 209 209 GLY GLY A . n A 1 211 LEU 211 210 210 LEU LEU A . n A 1 212 ALA 212 211 211 ALA ALA A . n A 1 213 GLN 213 212 212 GLN GLN A . n A 1 214 TYR 214 213 213 TYR TYR A . n A 1 215 GLN 215 214 214 GLN GLN A . n A 1 216 LYS 216 215 215 LYS LYS A . n A 1 217 ASP 217 216 216 ASP ASP A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 ALA 219 218 218 ALA ALA A . n A 1 220 THR 220 219 219 THR THR A . n A 1 221 VAL 221 220 220 VAL VAL A . n A 1 222 MSE 222 221 221 MSE MSE A . n A 1 223 ALA 223 222 222 ALA ALA A . n A 1 224 SER 224 223 223 SER SER A . n A 1 225 LEU 225 224 224 LEU LEU A . n A 1 226 LYS 226 225 225 LYS LYS A . n A 1 227 GLN 227 226 226 GLN GLN A . n A 1 228 LYS 228 227 227 LYS LYS A . n A 1 229 VAL 229 228 228 VAL VAL A . n A 1 230 GLY 230 229 229 GLY GLY A . n A 1 231 LEU 231 230 230 LEU LEU A . n A 1 232 ARG 232 231 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 300 300 ZN ZN A . C 3 HOH 1 301 1 HOH HOH A . C 3 HOH 2 302 2 HOH HOH A . C 3 HOH 3 303 3 HOH HOH A . C 3 HOH 4 304 4 HOH HOH A . C 3 HOH 5 305 5 HOH HOH A . C 3 HOH 6 306 6 HOH HOH A . C 3 HOH 7 307 7 HOH HOH A . C 3 HOH 8 308 8 HOH HOH A . C 3 HOH 9 309 9 HOH HOH A . C 3 HOH 10 310 10 HOH HOH A . C 3 HOH 11 311 11 HOH HOH A . C 3 HOH 12 312 12 HOH HOH A . C 3 HOH 13 313 13 HOH HOH A . C 3 HOH 14 314 14 HOH HOH A . C 3 HOH 15 315 15 HOH HOH A . C 3 HOH 16 316 16 HOH HOH A . C 3 HOH 17 317 17 HOH HOH A . C 3 HOH 18 318 18 HOH HOH A . C 3 HOH 19 319 19 HOH HOH A . C 3 HOH 20 320 20 HOH HOH A . C 3 HOH 21 321 21 HOH HOH A . C 3 HOH 22 322 22 HOH HOH A . C 3 HOH 23 323 23 HOH HOH A . C 3 HOH 24 324 24 HOH HOH A . C 3 HOH 25 325 25 HOH HOH A . C 3 HOH 26 326 26 HOH HOH A . C 3 HOH 27 327 27 HOH HOH A . C 3 HOH 28 328 28 HOH HOH A . C 3 HOH 29 329 29 HOH HOH A . C 3 HOH 30 330 30 HOH HOH A . C 3 HOH 31 331 31 HOH HOH A . C 3 HOH 32 332 32 HOH HOH A . C 3 HOH 33 333 33 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 162 A MSE 161 ? MET SELENOMETHIONINE 3 A MSE 222 A MSE 221 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3740 ? 1 MORE -40 ? 1 'SSA (A^2)' 19030 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 77.7550000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 189 ? A CYS 188 ? 1_555 ZN ? B ZN . ? A ZN 300 ? 1_555 SG ? A CYS 198 ? A CYS 197 ? 1_555 104.2 ? 2 SG ? A CYS 189 ? A CYS 188 ? 1_555 ZN ? B ZN . ? A ZN 300 ? 1_555 SG ? A CYS 201 ? A CYS 200 ? 1_555 114.5 ? 3 SG ? A CYS 198 ? A CYS 197 ? 1_555 ZN ? B ZN . ? A ZN 300 ? 1_555 SG ? A CYS 201 ? A CYS 200 ? 1_555 114.8 ? 4 SG ? A CYS 189 ? A CYS 188 ? 1_555 ZN ? B ZN . ? A ZN 300 ? 1_555 SG ? A CYS 204 ? A CYS 203 ? 1_555 98.3 ? 5 SG ? A CYS 198 ? A CYS 197 ? 1_555 ZN ? B ZN . ? A ZN 300 ? 1_555 SG ? A CYS 204 ? A CYS 203 ? 1_555 123.2 ? 6 SG ? A CYS 201 ? A CYS 200 ? 1_555 ZN ? B ZN . ? A ZN 300 ? 1_555 SG ? A CYS 204 ? A CYS 203 ? 1_555 101.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-12-24 5 'Structure model' 1 4 2017-10-18 6 'Structure model' 1 5 2017-10-25 7 'Structure model' 1 6 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Refinement description' 7 6 'Structure model' 'Author supporting evidence' 8 7 'Structure model' 'Database references' 9 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' pdbx_struct_assembly_auth_evidence 3 7 'Structure model' database_2 4 7 'Structure model' struct_conn 5 7 'Structure model' struct_ref_seq_dif 6 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 7 'Structure model' '_database_2.pdbx_DOI' 4 7 'Structure model' '_database_2.pdbx_database_accession' 5 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 7 'Structure model' '_struct_ref_seq_dif.details' 19 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 20.3820 _pdbx_refine_tls.origin_y 11.6610 _pdbx_refine_tls.origin_z 23.4280 _pdbx_refine_tls.T[1][1] -0.2227 _pdbx_refine_tls.T[2][2] -0.1033 _pdbx_refine_tls.T[3][3] -0.1560 _pdbx_refine_tls.T[1][2] -0.0181 _pdbx_refine_tls.T[1][3] -0.0447 _pdbx_refine_tls.T[2][3] -0.0162 _pdbx_refine_tls.L[1][1] 2.3501 _pdbx_refine_tls.L[2][2] 2.4044 _pdbx_refine_tls.L[3][3] 4.0448 _pdbx_refine_tls.L[1][2] -0.7353 _pdbx_refine_tls.L[1][3] -2.1841 _pdbx_refine_tls.L[2][3] 0.8823 _pdbx_refine_tls.S[1][1] -0.0249 _pdbx_refine_tls.S[2][2] 0.0060 _pdbx_refine_tls.S[3][3] 0.0189 _pdbx_refine_tls.S[1][2] 0.4381 _pdbx_refine_tls.S[1][3] 0.0414 _pdbx_refine_tls.S[2][3] -0.1955 _pdbx_refine_tls.S[2][1] -0.0444 _pdbx_refine_tls.S[3][1] -0.0221 _pdbx_refine_tls.S[3][2] -0.1199 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 2 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 230 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 229 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 SOLVE . ? package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 8 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; 999 ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 37 ? ? 48.03 -97.22 2 1 ARG A 38 ? ? -138.99 -112.74 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLY _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 36 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 37 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 133.51 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 40 ? CG ? A ARG 41 CG 2 1 Y 1 A ARG 40 ? CD ? A ARG 41 CD 3 1 Y 1 A ARG 40 ? NE ? A ARG 41 NE 4 1 Y 1 A ARG 40 ? CZ ? A ARG 41 CZ 5 1 Y 1 A ARG 40 ? NH1 ? A ARG 41 NH1 6 1 Y 1 A ARG 40 ? NH2 ? A ARG 41 NH2 7 1 Y 1 A GLU 44 ? CG ? A GLU 45 CG 8 1 Y 1 A GLU 44 ? CD ? A GLU 45 CD 9 1 Y 1 A GLU 44 ? OE1 ? A GLU 45 OE1 10 1 Y 1 A GLU 44 ? OE2 ? A GLU 45 OE2 11 1 Y 1 A GLU 48 ? CG ? A GLU 49 CG 12 1 Y 1 A GLU 48 ? CD ? A GLU 49 CD 13 1 Y 1 A GLU 48 ? OE1 ? A GLU 49 OE1 14 1 Y 1 A GLU 48 ? OE2 ? A GLU 49 OE2 15 1 Y 1 A LYS 52 ? CD ? A LYS 53 CD 16 1 Y 1 A LYS 52 ? CE ? A LYS 53 CE 17 1 Y 1 A LYS 52 ? NZ ? A LYS 53 NZ 18 1 Y 1 A GLU 68 ? CD ? A GLU 69 CD 19 1 Y 1 A GLU 68 ? OE1 ? A GLU 69 OE1 20 1 Y 1 A GLU 68 ? OE2 ? A GLU 69 OE2 21 1 Y 1 A ASP 77 ? CG ? A ASP 78 CG 22 1 Y 1 A ASP 77 ? OD1 ? A ASP 78 OD1 23 1 Y 1 A ASP 77 ? OD2 ? A ASP 78 OD2 24 1 Y 1 A SER 78 ? OG ? A SER 79 OG 25 1 Y 1 A ASP 83 ? CG ? A ASP 84 CG 26 1 Y 1 A ASP 83 ? OD1 ? A ASP 84 OD1 27 1 Y 1 A ASP 83 ? OD2 ? A ASP 84 OD2 28 1 Y 1 A ASN 93 ? CG ? A ASN 94 CG 29 1 Y 1 A ASN 93 ? OD1 ? A ASN 94 OD1 30 1 Y 1 A ASN 93 ? ND2 ? A ASN 94 ND2 31 1 Y 1 A ARG 99 ? CZ ? A ARG 100 CZ 32 1 Y 1 A ARG 99 ? NH1 ? A ARG 100 NH1 33 1 Y 1 A ARG 99 ? NH2 ? A ARG 100 NH2 34 1 Y 1 A LYS 215 ? CG ? A LYS 216 CG 35 1 Y 1 A LYS 215 ? CD ? A LYS 216 CD 36 1 Y 1 A LYS 215 ? CE ? A LYS 216 CE 37 1 Y 1 A LYS 215 ? NZ ? A LYS 216 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A TYR 84 ? A TYR 85 3 1 Y 1 A ASP 85 ? A ASP 86 4 1 Y 1 A ALA 86 ? A ALA 87 5 1 Y 1 A ASN 87 ? A ASN 88 6 1 Y 1 A ALA 88 ? A ALA 89 7 1 Y 1 A GLN 89 ? A GLN 90 8 1 Y 1 A GLY 90 ? A GLY 91 9 1 Y 1 A ILE 91 ? A ILE 92 10 1 Y 1 A PRO 92 ? A PRO 93 11 1 Y 1 A ARG 231 ? A ARG 232 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #