data_2PG4 # _entry.id 2PG4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PG4 pdb_00002pg4 10.2210/pdb2pg4/pdb RCSB RCSB042340 ? ? WWPDB D_1000042340 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 373551 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2PG4 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-04-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of uncharacterized protein (NP_147569.1) from Aeropyrum pernix at 2.21 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2PG4 _cell.length_a 109.840 _cell.length_b 109.840 _cell.length_c 36.760 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PG4 _symmetry.Int_Tables_number 90 _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 10927.527 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 7 ? ? ? ? 4 non-polymer syn 'CITRIC ACID' 192.124 1 ? ? ? ? 5 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 6 water nat water 18.015 34 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)DDETLRLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFF(MSE)GLKDRLIRAGLVKEETLSYRVKT LKLTEKGRRLAECLEKCRDVLGS ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDDETLRLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGR RLAECLEKCRDVLGS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 373551 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASP n 1 4 ASP n 1 5 GLU n 1 6 THR n 1 7 LEU n 1 8 ARG n 1 9 LEU n 1 10 GLN n 1 11 PHE n 1 12 GLY n 1 13 HIS n 1 14 LEU n 1 15 ILE n 1 16 ARG n 1 17 ILE n 1 18 LEU n 1 19 PRO n 1 20 THR n 1 21 LEU n 1 22 LEU n 1 23 GLU n 1 24 PHE n 1 25 GLU n 1 26 LYS n 1 27 LYS n 1 28 GLY n 1 29 TYR n 1 30 GLU n 1 31 PRO n 1 32 SER n 1 33 LEU n 1 34 ALA n 1 35 GLU n 1 36 ILE n 1 37 VAL n 1 38 LYS n 1 39 ALA n 1 40 SER n 1 41 GLY n 1 42 VAL n 1 43 SER n 1 44 GLU n 1 45 LYS n 1 46 THR n 1 47 PHE n 1 48 PHE n 1 49 MSE n 1 50 GLY n 1 51 LEU n 1 52 LYS n 1 53 ASP n 1 54 ARG n 1 55 LEU n 1 56 ILE n 1 57 ARG n 1 58 ALA n 1 59 GLY n 1 60 LEU n 1 61 VAL n 1 62 LYS n 1 63 GLU n 1 64 GLU n 1 65 THR n 1 66 LEU n 1 67 SER n 1 68 TYR n 1 69 ARG n 1 70 VAL n 1 71 LYS n 1 72 THR n 1 73 LEU n 1 74 LYS n 1 75 LEU n 1 76 THR n 1 77 GLU n 1 78 LYS n 1 79 GLY n 1 80 ARG n 1 81 ARG n 1 82 LEU n 1 83 ALA n 1 84 GLU n 1 85 CYS n 1 86 LEU n 1 87 GLU n 1 88 LYS n 1 89 CYS n 1 90 ARG n 1 91 ASP n 1 92 VAL n 1 93 LEU n 1 94 GLY n 1 95 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Aeropyrum _entity_src_gen.pdbx_gene_src_gene 'NP_147569.1, APE0880.1, APES039, APE_0880a' _entity_src_gen.gene_src_species 'Aeropyrum pernix' _entity_src_gen.gene_src_strain K1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aeropyrum pernix' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272557 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9YDN4_AERPE _struct_ref.pdbx_db_accession Q9YDN4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDDETLRLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRR LAECLEKCRDVLGS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PG4 A 2 ? 95 ? Q9YDN4 1 ? 94 ? 1 94 2 1 2PG4 B 2 ? 95 ? Q9YDN4 1 ? 94 ? 1 94 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PG4 GLY A 1 ? UNP Q9YDN4 ? ? 'expression tag' 0 1 1 2PG4 MSE A 2 ? UNP Q9YDN4 MET 1 'modified residue' 1 2 1 2PG4 MSE A 49 ? UNP Q9YDN4 MET 48 'modified residue' 48 3 2 2PG4 GLY B 1 ? UNP Q9YDN4 ? ? 'expression tag' 0 4 2 2PG4 MSE B 2 ? UNP Q9YDN4 MET 1 'modified residue' 1 5 2 2PG4 MSE B 49 ? UNP Q9YDN4 MET 48 'modified residue' 48 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PG4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pdbx_details 'NANODROP, 1.0M LiCl, 10.0% PEG 6000, 0.1M Citrate pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2007-02-16 _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97929 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.91162, 0.97929' # _reflns.entry_id 2PG4 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.437 _reflns.d_resolution_high 2.21 _reflns.number_obs 11747 _reflns.number_all ? _reflns.percent_possible_obs 95.400 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.290 _reflns.B_iso_Wilson_estimate 52.45 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.21 2.27 63.10 0.464 ? 2.6 ? ? ? ? ? ? ? 1 1 2.27 2.36 98.30 0.384 ? 3.4 ? ? ? ? ? ? ? 2 1 2.36 2.47 98.40 0.312 ? 4.2 ? ? ? ? ? ? ? 3 1 2.47 2.60 98.30 0.248 ? 5.1 ? ? ? ? ? ? ? 4 1 2.60 2.76 99.10 0.187 ? 6.8 ? ? ? ? ? ? ? 5 1 2.76 2.97 99.10 0.136 ? 9.2 ? ? ? ? ? ? ? 6 1 2.97 3.27 99.30 0.097 ? 12.6 ? ? ? ? ? ? ? 7 1 3.27 3.74 99.90 0.064 ? 18.2 ? ? ? ? ? ? ? 8 1 3.74 ? 99.80 0.046 ? 22.8 ? ? ? ? ? ? ? 9 1 # _refine.entry_id 2PG4 _refine.ls_number_reflns_obs 11725 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.43 _refine.ls_d_res_high 2.21 _refine.ls_percent_reflns_obs 98.87 _refine.ls_R_factor_obs 0.20083 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19797 _refine.ls_R_factor_R_free 0.25754 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 563 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 40.916 _refine.aniso_B[1][1] -0.23 _refine.aniso_B[2][2] -0.23 _refine.aniso_B[3][3] 0.47 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ETHYLENE GLYCOL (EDO) FROM THE CRYOPROTECTANT, CITRATE (CIT) AND CL IONS FROM THE CRYSTALLIZATION BUFFER WERE MODELED INTO THE STRUCTURE. 5. PEG6000 FRAGMENTS (PEG) FROM CRYSTALLIZATION SOLUTION ARE MODELLED. 6. THE SIDE CHAIN OF THE RESIDUE 48 IN THE A SUBUNIT WAS DISORDERED AND WAS NOT MODELED. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.257 _refine.pdbx_overall_ESU_R_Free 0.219 _refine.overall_SU_ML 0.167 _refine.overall_SU_B 12.956 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1453 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 1538 _refine_hist.d_res_high 2.21 _refine_hist.d_res_low 29.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1564 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1159 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.650 2.037 ? 2079 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.936 3.000 ? 2823 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.110 5.000 ? 190 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.916 23.333 ? 63 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.542 15.000 ? 320 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.021 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.075 0.200 ? 238 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1656 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 302 'X-RAY DIFFRACTION' ? r_nbd_refined 0.205 0.200 ? 315 'X-RAY DIFFRACTION' ? r_nbd_other 0.181 0.200 ? 1137 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.177 0.200 ? 707 'X-RAY DIFFRACTION' ? r_nbtor_other 0.086 0.200 ? 861 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.204 0.200 ? 41 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.195 0.200 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.229 0.200 ? 44 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.211 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.133 3.000 ? 986 'X-RAY DIFFRACTION' ? r_mcbond_other 0.530 3.000 ? 383 'X-RAY DIFFRACTION' ? r_mcangle_it 3.117 5.000 ? 1508 'X-RAY DIFFRACTION' ? r_scbond_it 5.915 8.000 ? 654 'X-RAY DIFFRACTION' ? r_scangle_it 7.142 11.000 ? 571 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 811 0.42 5.00 'loose positional' 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 A 313 0.34 5.00 'loose positional' 2 'X-RAY DIFFRACTION' 2 ? ? ? 1 A 811 2.91 10.00 'loose thermal' 1 'X-RAY DIFFRACTION' 3 ? ? ? 1 A 313 2.45 10.00 'loose thermal' 2 'X-RAY DIFFRACTION' 4 ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.210 _refine_ls_shell.d_res_low 2.264 _refine_ls_shell.number_reflns_R_work 689 _refine_ls_shell.R_factor_R_work 0.22 _refine_ls_shell.percent_reflns_obs 85.58 _refine_ls_shell.R_factor_R_free 0.327 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 2 1 A 2 2 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 3 A 66 1 6 A ASP 4 ? A SER 67 ? 1 ? 2 B 3 B 66 1 6 B ASP 4 ? B SER 67 ? 1 ? 1 A 70 A 92 1 6 A LYS 71 ? A LEU 93 ? 2 ? 2 B 70 B 92 1 6 B LYS 71 ? B LEU 93 ? 2 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? # _struct.entry_id 2PG4 _struct.title 'Crystal structure of a putative dna binding protein (ape_0880a) from aeropyrum pernix k1 at 2.21 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, dna binding protein' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.entry_id 2PG4 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 2 ? K N N 4 ? L N N 3 ? M N N 3 ? N N N 5 ? O N N 6 ? P N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 4 ? LEU A 9 ? ASP A 3 LEU A 8 5 ? 6 HELX_P HELX_P2 2 GLN A 10 ? LYS A 27 ? GLN A 9 LYS A 26 1 ? 18 HELX_P HELX_P3 3 SER A 32 ? GLY A 41 ? SER A 31 GLY A 40 1 ? 10 HELX_P HELX_P4 4 SER A 43 ? MSE A 49 ? SER A 42 MSE A 48 1 ? 7 HELX_P HELX_P5 5 GLY A 50 ? ALA A 58 ? GLY A 49 ALA A 57 1 ? 9 HELX_P HELX_P6 6 THR A 76 ? LEU A 93 ? THR A 75 LEU A 92 1 ? 18 HELX_P HELX_P7 7 GLU B 5 ? LEU B 9 ? GLU B 4 LEU B 8 5 ? 5 HELX_P HELX_P8 8 GLN B 10 ? LYS B 27 ? GLN B 9 LYS B 26 1 ? 18 HELX_P HELX_P9 9 SER B 32 ? GLY B 41 ? SER B 31 GLY B 40 1 ? 10 HELX_P HELX_P10 10 SER B 43 ? MSE B 49 ? SER B 42 MSE B 48 1 ? 7 HELX_P HELX_P11 11 GLY B 50 ? ALA B 58 ? GLY B 49 ALA B 57 1 ? 9 HELX_P HELX_P12 12 THR B 76 ? LEU B 93 ? THR B 75 LEU B 92 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C A ? ? 1_555 A ASP 3 N A ? A MSE 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A MSE 2 C B ? ? 1_555 A ASP 3 N B ? A MSE 1 A ASP 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A PHE 48 C ? ? ? 1_555 A MSE 49 N ? ? A PHE 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 49 C ? ? ? 1_555 A GLY 50 N ? ? A MSE 48 A GLY 49 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? B PHE 48 C ? ? ? 1_555 B MSE 49 N ? ? B PHE 47 B MSE 48 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale6 covale both ? B MSE 49 C ? ? ? 1_555 B GLY 50 N ? ? B MSE 48 B GLY 49 1_555 ? ? ? ? ? ? ? 1.346 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 61 ? SER A 67 ? VAL A 60 SER A 66 A 2 VAL A 70 ? LEU A 75 ? VAL A 69 LEU A 74 B 1 VAL B 61 ? THR B 65 ? VAL B 60 THR B 64 B 2 LYS B 71 ? LEU B 75 ? LYS B 70 LEU B 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 66 ? N LEU A 65 O VAL A 70 ? O VAL A 69 B 1 2 N LYS B 62 ? N LYS B 61 O LYS B 74 ? O LYS B 73 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CL 95 ? 3 'BINDING SITE FOR RESIDUE CL B 95' AC2 Software A CL 95 ? 3 'BINDING SITE FOR RESIDUE CL A 95' AC3 Software B CL 96 ? 3 'BINDING SITE FOR RESIDUE CL B 96' AC4 Software B CIT 97 ? 9 'BINDING SITE FOR RESIDUE CIT B 97' AC5 Software A EDO 96 ? 8 'BINDING SITE FOR RESIDUE EDO A 96' AC6 Software A EDO 97 ? 3 'BINDING SITE FOR RESIDUE EDO A 97' AC7 Software A EDO 98 ? 6 'BINDING SITE FOR RESIDUE EDO A 98' AC8 Software A EDO 99 ? 5 'BINDING SITE FOR RESIDUE EDO A 99' AC9 Software B EDO 98 ? 9 'BINDING SITE FOR RESIDUE EDO B 98' BC1 Software A EDO 100 ? 4 'BINDING SITE FOR RESIDUE EDO A 100' BC2 Software B EDO 99 ? 3 'BINDING SITE FOR RESIDUE EDO B 99' BC3 Software B PEG 100 ? 10 'BINDING SITE FOR RESIDUE PEG B 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLN B 10 ? GLN B 9 . ? 1_555 ? 2 AC1 3 HIS B 13 ? HIS B 12 . ? 1_555 ? 3 AC1 3 ARG B 54 ? ARG B 53 . ? 1_555 ? 4 AC2 3 GLN A 10 ? GLN A 9 . ? 1_555 ? 5 AC2 3 HIS A 13 ? HIS A 12 . ? 1_555 ? 6 AC2 3 ARG A 54 ? ARG A 53 . ? 1_555 ? 7 AC3 3 LEU B 73 ? LEU B 72 . ? 1_555 ? 8 AC3 3 HOH P . ? HOH B 118 . ? 1_555 ? 9 AC3 3 HOH P . ? HOH B 119 . ? 1_555 ? 10 AC4 9 MSE A 2 ? MSE A 1 . ? 8_666 ? 11 AC4 9 ASP A 3 ? ASP A 2 . ? 8_666 ? 12 AC4 9 GLN B 10 ? GLN B 9 . ? 1_555 ? 13 AC4 9 GLY B 12 ? GLY B 11 . ? 1_555 ? 14 AC4 9 HIS B 13 ? HIS B 12 . ? 1_555 ? 15 AC4 9 ARG B 16 ? ARG B 15 . ? 1_555 ? 16 AC4 9 VAL B 42 ? VAL B 41 . ? 1_555 ? 17 AC4 9 SER B 43 ? SER B 42 . ? 1_555 ? 18 AC4 9 THR B 46 ? THR B 45 . ? 1_555 ? 19 AC5 8 SER A 32 ? SER A 31 . ? 1_555 ? 20 AC5 8 LEU A 33 ? LEU A 32 . ? 1_555 ? 21 AC5 8 ALA A 34 ? ALA A 33 . ? 1_555 ? 22 AC5 8 GLU A 44 ? GLU A 43 . ? 7_556 ? 23 AC5 8 ARG A 69 ? ARG A 68 . ? 1_555 ? 24 AC5 8 VAL A 70 ? VAL A 69 . ? 1_555 ? 25 AC5 8 LYS A 71 ? LYS A 70 . ? 1_555 ? 26 AC5 8 EDO G . ? EDO A 99 . ? 7_556 ? 27 AC6 3 SER A 32 ? SER A 31 . ? 1_555 ? 28 AC6 3 GLU A 35 ? GLU A 34 . ? 1_555 ? 29 AC6 3 TYR B 68 ? TYR B 67 . ? 3_544 ? 30 AC7 6 HIS A 13 ? HIS A 12 . ? 1_555 ? 31 AC7 6 ARG A 16 ? ARG A 15 . ? 1_555 ? 32 AC7 6 VAL A 42 ? VAL A 41 . ? 1_555 ? 33 AC7 6 SER A 43 ? SER A 42 . ? 1_555 ? 34 AC7 6 THR A 46 ? THR A 45 . ? 1_555 ? 35 AC7 6 HOH O . ? HOH A 105 . ? 1_555 ? 36 AC8 5 LEU A 33 ? LEU A 32 . ? 7_556 ? 37 AC8 5 LYS A 52 ? LYS A 51 . ? 7_556 ? 38 AC8 5 GLU A 63 ? GLU A 62 . ? 7_556 ? 39 AC8 5 EDO D . ? EDO A 96 . ? 7_556 ? 40 AC8 5 HOH O . ? HOH A 108 . ? 1_555 ? 41 AC9 9 PHE B 47 ? PHE B 46 . ? 1_555 ? 42 AC9 9 PHE B 48 ? PHE B 47 . ? 1_555 ? 43 AC9 9 PHE B 48 ? PHE B 47 . ? 8_667 ? 44 AC9 9 MSE B 49 ? MSE B 48 . ? 8_667 ? 45 AC9 9 GLY B 50 ? GLY B 49 . ? 1_555 ? 46 AC9 9 LEU B 51 ? LEU B 50 . ? 1_555 ? 47 AC9 9 LYS B 52 ? LYS B 51 . ? 1_555 ? 48 AC9 9 ASP B 53 ? ASP B 52 . ? 1_555 ? 49 AC9 9 HOH P . ? HOH B 108 . ? 1_555 ? 50 BC1 4 THR A 20 ? THR A 19 . ? 1_555 ? 51 BC1 4 GLU A 23 ? GLU A 22 . ? 1_555 ? 52 BC1 4 PHE A 24 ? PHE A 23 . ? 1_555 ? 53 BC1 4 LYS A 27 ? LYS A 26 . ? 1_555 ? 54 BC2 3 THR B 46 ? THR B 45 . ? 1_555 ? 55 BC2 3 MSE B 49 ? MSE B 48 . ? 1_555 ? 56 BC2 3 ARG B 54 ? ARG B 53 . ? 1_555 ? 57 BC3 10 LEU B 33 ? LEU B 32 . ? 1_555 ? 58 BC3 10 ALA B 34 ? ALA B 33 . ? 8_667 ? 59 BC3 10 VAL B 37 ? VAL B 36 . ? 8_667 ? 60 BC3 10 GLU B 44 ? GLU B 43 . ? 8_667 ? 61 BC3 10 PHE B 48 ? PHE B 47 . ? 8_667 ? 62 BC3 10 VAL B 70 ? VAL B 69 . ? 1_555 ? 63 BC3 10 LYS B 71 ? LYS B 70 . ? 1_555 ? 64 BC3 10 HOH P . ? HOH B 111 . ? 8_667 ? 65 BC3 10 HOH P . ? HOH B 113 . ? 8_667 ? 66 BC3 10 HOH P . ? HOH B 113 . ? 1_555 ? # _atom_sites.entry_id 2PG4 _atom_sites.fract_transf_matrix[1][1] 0.00910 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.00910 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.02720 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ASP 3 2 2 ASP ASP A . n A 1 4 ASP 4 3 3 ASP ASP A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 THR 6 5 5 THR THR A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 GLY 12 11 11 GLY GLY A . n A 1 13 HIS 13 12 12 HIS HIS A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 ILE 15 14 14 ILE ILE A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 ILE 17 16 16 ILE ILE A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 THR 20 19 19 THR THR A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 PHE 24 23 23 PHE PHE A . n A 1 25 GLU 25 24 24 GLU GLU A . n A 1 26 LYS 26 25 25 LYS LYS A . n A 1 27 LYS 27 26 26 LYS LYS A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 TYR 29 28 28 TYR TYR A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 PRO 31 30 30 PRO PRO A . n A 1 32 SER 32 31 31 SER SER A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 ALA 39 38 38 ALA ALA A . n A 1 40 SER 40 39 39 SER SER A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 VAL 42 41 41 VAL VAL A . n A 1 43 SER 43 42 42 SER SER A . n A 1 44 GLU 44 43 43 GLU GLU A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 PHE 47 46 46 PHE PHE A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 MSE 49 48 48 MSE MSE A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 LYS 52 51 51 LYS LYS A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 ARG 54 53 53 ARG ARG A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 ARG 57 56 56 ARG ARG A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 GLY 59 58 58 GLY GLY A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 LYS 62 61 61 LYS LYS A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 TYR 68 67 67 TYR TYR A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 VAL 70 69 69 VAL VAL A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 LYS 78 77 77 LYS LYS A . n A 1 79 GLY 79 78 78 GLY GLY A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 ARG 81 80 80 ARG ARG A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 CYS 85 84 84 CYS CYS A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 LYS 88 87 87 LYS LYS A . n A 1 89 CYS 89 88 88 CYS CYS A . n A 1 90 ARG 90 89 89 ARG ARG A . n A 1 91 ASP 91 90 90 ASP ASP A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 GLY 94 93 ? ? ? A . n A 1 95 SER 95 94 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 ASP 3 2 ? ? ? B . n B 1 4 ASP 4 3 3 ASP ASP B . n B 1 5 GLU 5 4 4 GLU GLU B . n B 1 6 THR 6 5 5 THR THR B . n B 1 7 LEU 7 6 6 LEU LEU B . n B 1 8 ARG 8 7 7 ARG ARG B . n B 1 9 LEU 9 8 8 LEU LEU B . n B 1 10 GLN 10 9 9 GLN GLN B . n B 1 11 PHE 11 10 10 PHE PHE B . n B 1 12 GLY 12 11 11 GLY GLY B . n B 1 13 HIS 13 12 12 HIS HIS B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 ILE 15 14 14 ILE ILE B . n B 1 16 ARG 16 15 15 ARG ARG B . n B 1 17 ILE 17 16 16 ILE ILE B . n B 1 18 LEU 18 17 17 LEU LEU B . n B 1 19 PRO 19 18 18 PRO PRO B . n B 1 20 THR 20 19 19 THR THR B . n B 1 21 LEU 21 20 20 LEU LEU B . n B 1 22 LEU 22 21 21 LEU LEU B . n B 1 23 GLU 23 22 22 GLU GLU B . n B 1 24 PHE 24 23 23 PHE PHE B . n B 1 25 GLU 25 24 24 GLU GLU B . n B 1 26 LYS 26 25 25 LYS LYS B . n B 1 27 LYS 27 26 26 LYS LYS B . n B 1 28 GLY 28 27 27 GLY GLY B . n B 1 29 TYR 29 28 28 TYR TYR B . n B 1 30 GLU 30 29 29 GLU GLU B . n B 1 31 PRO 31 30 30 PRO PRO B . n B 1 32 SER 32 31 31 SER SER B . n B 1 33 LEU 33 32 32 LEU LEU B . n B 1 34 ALA 34 33 33 ALA ALA B . n B 1 35 GLU 35 34 34 GLU GLU B . n B 1 36 ILE 36 35 35 ILE ILE B . n B 1 37 VAL 37 36 36 VAL VAL B . n B 1 38 LYS 38 37 37 LYS LYS B . n B 1 39 ALA 39 38 38 ALA ALA B . n B 1 40 SER 40 39 39 SER SER B . n B 1 41 GLY 41 40 40 GLY GLY B . n B 1 42 VAL 42 41 41 VAL VAL B . n B 1 43 SER 43 42 42 SER SER B . n B 1 44 GLU 44 43 43 GLU GLU B . n B 1 45 LYS 45 44 44 LYS LYS B . n B 1 46 THR 46 45 45 THR THR B . n B 1 47 PHE 47 46 46 PHE PHE B . n B 1 48 PHE 48 47 47 PHE PHE B . n B 1 49 MSE 49 48 48 MSE MSE B . n B 1 50 GLY 50 49 49 GLY GLY B . n B 1 51 LEU 51 50 50 LEU LEU B . n B 1 52 LYS 52 51 51 LYS LYS B . n B 1 53 ASP 53 52 52 ASP ASP B . n B 1 54 ARG 54 53 53 ARG ARG B . n B 1 55 LEU 55 54 54 LEU LEU B . n B 1 56 ILE 56 55 55 ILE ILE B . n B 1 57 ARG 57 56 56 ARG ARG B . n B 1 58 ALA 58 57 57 ALA ALA B . n B 1 59 GLY 59 58 58 GLY GLY B . n B 1 60 LEU 60 59 59 LEU LEU B . n B 1 61 VAL 61 60 60 VAL VAL B . n B 1 62 LYS 62 61 61 LYS LYS B . n B 1 63 GLU 63 62 62 GLU GLU B . n B 1 64 GLU 64 63 63 GLU GLU B . n B 1 65 THR 65 64 64 THR THR B . n B 1 66 LEU 66 65 65 LEU LEU B . n B 1 67 SER 67 66 66 SER SER B . n B 1 68 TYR 68 67 67 TYR TYR B . n B 1 69 ARG 69 68 68 ARG ARG B . n B 1 70 VAL 70 69 69 VAL VAL B . n B 1 71 LYS 71 70 70 LYS LYS B . n B 1 72 THR 72 71 71 THR THR B . n B 1 73 LEU 73 72 72 LEU LEU B . n B 1 74 LYS 74 73 73 LYS LYS B . n B 1 75 LEU 75 74 74 LEU LEU B . n B 1 76 THR 76 75 75 THR THR B . n B 1 77 GLU 77 76 76 GLU GLU B . n B 1 78 LYS 78 77 77 LYS LYS B . n B 1 79 GLY 79 78 78 GLY GLY B . n B 1 80 ARG 80 79 79 ARG ARG B . n B 1 81 ARG 81 80 80 ARG ARG B . n B 1 82 LEU 82 81 81 LEU LEU B . n B 1 83 ALA 83 82 82 ALA ALA B . n B 1 84 GLU 84 83 83 GLU GLU B . n B 1 85 CYS 85 84 84 CYS CYS B . n B 1 86 LEU 86 85 85 LEU LEU B . n B 1 87 GLU 87 86 86 GLU GLU B . n B 1 88 LYS 88 87 87 LYS LYS B . n B 1 89 CYS 89 88 88 CYS CYS B . n B 1 90 ARG 90 89 89 ARG ARG B . n B 1 91 ASP 91 90 90 ASP ASP B . n B 1 92 VAL 92 91 91 VAL VAL B . n B 1 93 LEU 93 92 92 LEU LEU B . n B 1 94 GLY 94 93 93 GLY GLY B . n B 1 95 SER 95 94 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 95 2 CL CL A . D 3 EDO 1 96 5 EDO EDO A . E 3 EDO 1 97 6 EDO EDO A . F 3 EDO 1 98 7 EDO EDO A . G 3 EDO 1 99 8 EDO EDO A . H 3 EDO 1 100 10 EDO EDO A . I 2 CL 1 95 1 CL CL B . J 2 CL 1 96 3 CL CL B . K 4 CIT 1 97 4 CIT CIT B . L 3 EDO 1 98 9 EDO EDO B . M 3 EDO 1 99 11 EDO EDO B . N 5 PEG 1 100 12 PEG PEG B . O 6 HOH 1 101 15 HOH HOH A . O 6 HOH 2 102 18 HOH HOH A . O 6 HOH 3 103 22 HOH HOH A . O 6 HOH 4 104 24 HOH HOH A . O 6 HOH 5 105 26 HOH HOH A . O 6 HOH 6 106 27 HOH HOH A . O 6 HOH 7 107 28 HOH HOH A . O 6 HOH 8 108 30 HOH HOH A . O 6 HOH 9 109 31 HOH HOH A . O 6 HOH 10 110 32 HOH HOH A . O 6 HOH 11 111 33 HOH HOH A . O 6 HOH 12 112 34 HOH HOH A . O 6 HOH 13 113 39 HOH HOH A . O 6 HOH 14 114 40 HOH HOH A . P 6 HOH 1 101 13 HOH HOH B . P 6 HOH 2 102 14 HOH HOH B . P 6 HOH 3 103 16 HOH HOH B . P 6 HOH 4 104 17 HOH HOH B . P 6 HOH 5 105 19 HOH HOH B . P 6 HOH 6 106 20 HOH HOH B . P 6 HOH 7 107 21 HOH HOH B . P 6 HOH 8 108 23 HOH HOH B . P 6 HOH 9 109 25 HOH HOH B . P 6 HOH 10 110 29 HOH HOH B . P 6 HOH 11 111 35 HOH HOH B . P 6 HOH 12 112 36 HOH HOH B . P 6 HOH 13 113 37 HOH HOH B . P 6 HOH 14 114 38 HOH HOH B . P 6 HOH 15 115 41 HOH HOH B . P 6 HOH 16 116 42 HOH HOH B . P 6 HOH 17 117 43 HOH HOH B . P 6 HOH 18 118 44 HOH HOH B . P 6 HOH 19 119 45 HOH HOH B . P 6 HOH 20 120 46 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 49 A MSE 48 ? MET SELENOMETHIONINE 3 B MSE 49 B MSE 48 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA tetrameric 4 4 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 3 1,3 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 4 1,4 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3400 ? 1 MORE -47 ? 1 'SSA (A^2)' 10240 ? 2 'ABSA (A^2)' 7990 ? 2 MORE -91 ? 2 'SSA (A^2)' 19300 ? 3 'ABSA (A^2)' 7920 ? 3 MORE -87 ? 3 'SSA (A^2)' 19370 ? 4 'ABSA (A^2)' 9110 ? 4 MORE -80 ? 4 'SSA (A^2)' 18180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0.0000000000 -1.0000000000 0.0000000000 109.8400000000 -1.0000000000 0.0000000000 0.0000000000 109.8400000000 0.0000000000 0.0000000000 -1.0000000000 36.7600000000 3 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 36.7600000000 4 'crystal symmetry operation' 8_667 -y+1,-x+1,-z+2 0.0000000000 -1.0000000000 0.0000000000 109.8400000000 -1.0000000000 0.0000000000 0.0000000000 109.8400000000 0.0000000000 0.0000000000 -1.0000000000 73.5200000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 49.6499 29.9769 13.8719 -0.1000 -0.0767 -0.1065 0.0473 -0.0350 -0.0298 7.4024 0.8010 4.0231 -0.3642 3.5122 -0.7507 0.1226 0.2060 -0.2328 -0.1518 -0.0434 -0.1559 0.1235 0.2247 -0.0792 'X-RAY DIFFRACTION' 2 ? refined 69.5342 23.6501 29.5958 -0.1630 -0.1304 -0.0823 0.0173 -0.0018 0.0358 5.2553 1.4246 3.1089 -0.6743 2.7352 -0.0733 0.1194 0.0145 -0.4568 -0.0421 0.0045 0.1794 0.1129 -0.1962 -0.1240 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 2 A 92 A 93 ? 'X-RAY DIFFRACTION' ? 2 2 B 3 B 4 B 93 B 94 ? 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 SHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 57 ? ? -68.64 0.19 2 1 ALA A 57 ? ? -68.96 0.19 3 1 LEU A 65 ? ? -92.76 -63.54 4 1 LEU B 92 ? ? -85.29 -88.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 7 ? CZ ? A ARG 8 CZ 2 1 Y 1 A ARG 7 ? NH1 ? A ARG 8 NH1 3 1 Y 1 A ARG 7 ? NH2 ? A ARG 8 NH2 4 1 Y 1 A LYS 37 ? CE ? A LYS 38 CE 5 1 Y 1 A LYS 37 ? NZ ? A LYS 38 NZ 6 1 Y 1 A MSE 48 ? CG ? A MSE 49 CG 7 1 Y 1 A MSE 48 ? SE ? A MSE 49 SE 8 1 Y 1 A MSE 48 ? CE ? A MSE 49 CE 9 1 Y 1 A ARG 68 ? CG ? A ARG 69 CG 10 1 Y 1 A ARG 68 ? CD ? A ARG 69 CD 11 1 Y 1 A ARG 68 ? NE ? A ARG 69 NE 12 1 Y 1 A ARG 68 ? CZ ? A ARG 69 CZ 13 1 Y 1 A ARG 68 ? NH1 ? A ARG 69 NH1 14 1 Y 1 A ARG 68 ? NH2 ? A ARG 69 NH2 15 1 Y 1 A LYS 73 ? CE ? A LYS 74 CE 16 1 Y 1 A LYS 73 ? NZ ? A LYS 74 NZ 17 1 Y 1 B ARG 7 ? CZ ? B ARG 8 CZ 18 1 Y 1 B ARG 7 ? NH1 ? B ARG 8 NH1 19 1 Y 1 B ARG 7 ? NH2 ? B ARG 8 NH2 20 1 Y 1 B LYS 44 ? CE ? B LYS 45 CE 21 1 Y 1 B LYS 44 ? NZ ? B LYS 45 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLY 93 ? A GLY 94 3 1 Y 1 A SER 94 ? A SER 95 4 1 Y 1 B GLY 0 ? B GLY 1 5 1 Y 1 B MSE 1 ? B MSE 2 6 1 Y 1 B ASP 2 ? B ASP 3 7 1 Y 1 B SER 94 ? B SER 95 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 1,2-ETHANEDIOL EDO 4 'CITRIC ACID' CIT 5 'DI(HYDROXYETHYL)ETHER' PEG 6 water HOH #