data_2PIL # _entry.id 2PIL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2PIL WWPDB D_1000178475 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PIL _pdbx_database_status.recvd_initial_deposition_date 1998-03-02 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Forest, K.T.' 1 'Dunham, S.A.' 2 'Koomey, M.' 3 'Tainer, J.A.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystallographic structure reveals phosphorylated pilin from Neisseria: phosphoserine sites modify type IV pilus surface chemistry and fibre morphology. ; Mol.Microbiol. 31 743 752 1999 MOMIEE UK 0950-382X 2007 ? 10048019 10.1046/j.1365-2958.1999.01184.x 1 'Structure of the Fibre-Forming Protein Pilin at 2.6 A Resolution' Nature 378 32 ? 1995 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Forest, K.T.' 1 ? primary 'Dunham, S.A.' 2 ? primary 'Koomey, M.' 3 ? primary 'Tainer, J.A.' 4 ? 1 'Parge, H.E.' 5 ? 1 'Forest, K.T.' 6 ? 1 'Hickey, M.J.' 7 ? 1 'Christensen, D.A.' 8 ? 1 'Getzoff, E.D.' 9 ? 1 'Tainer, J.A.' 10 ? # _cell.entry_id 2PIL _cell.length_a 127.580 _cell.length_b 121.080 _cell.length_c 26.860 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PIL _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'TYPE 4 PILIN' 17286.484 1 ? ? ? ? 2 branched man 'alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose' 383.349 1 ? ? ? ? 3 non-polymer syn 'PLATINUM (II) ION' 195.078 1 ? ? ? ? 4 non-polymer syn HEPTANE-1,2,3-TRIOL 148.200 1 ? ? ? ? 5 water nat water 18.015 127 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name FIMBRIAE # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MEA)TLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVA(SEP)PPSD IKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCR DNFDAK ; _entity_poly.pdbx_seq_one_letter_code_can ;FTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASPPSDIKGKYVKE VEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCRDNFDAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MEA n 1 2 THR n 1 3 LEU n 1 4 ILE n 1 5 GLU n 1 6 LEU n 1 7 MET n 1 8 ILE n 1 9 VAL n 1 10 ILE n 1 11 ALA n 1 12 ILE n 1 13 VAL n 1 14 GLY n 1 15 ILE n 1 16 LEU n 1 17 ALA n 1 18 ALA n 1 19 VAL n 1 20 ALA n 1 21 LEU n 1 22 PRO n 1 23 ALA n 1 24 TYR n 1 25 GLN n 1 26 ASP n 1 27 TYR n 1 28 THR n 1 29 ALA n 1 30 ARG n 1 31 ALA n 1 32 GLN n 1 33 VAL n 1 34 SER n 1 35 GLU n 1 36 ALA n 1 37 ILE n 1 38 LEU n 1 39 LEU n 1 40 ALA n 1 41 GLU n 1 42 GLY n 1 43 GLN n 1 44 LYS n 1 45 SER n 1 46 ALA n 1 47 VAL n 1 48 THR n 1 49 GLU n 1 50 TYR n 1 51 TYR n 1 52 LEU n 1 53 ASN n 1 54 HIS n 1 55 GLY n 1 56 LYS n 1 57 TRP n 1 58 PRO n 1 59 GLU n 1 60 ASN n 1 61 ASN n 1 62 THR n 1 63 SER n 1 64 ALA n 1 65 GLY n 1 66 VAL n 1 67 ALA n 1 68 SEP n 1 69 PRO n 1 70 PRO n 1 71 SER n 1 72 ASP n 1 73 ILE n 1 74 LYS n 1 75 GLY n 1 76 LYS n 1 77 TYR n 1 78 VAL n 1 79 LYS n 1 80 GLU n 1 81 VAL n 1 82 GLU n 1 83 VAL n 1 84 LYS n 1 85 ASN n 1 86 GLY n 1 87 VAL n 1 88 VAL n 1 89 THR n 1 90 ALA n 1 91 THR n 1 92 MET n 1 93 LEU n 1 94 SER n 1 95 SER n 1 96 GLY n 1 97 VAL n 1 98 ASN n 1 99 ASN n 1 100 GLU n 1 101 ILE n 1 102 LYS n 1 103 GLY n 1 104 LYS n 1 105 LYS n 1 106 LEU n 1 107 SER n 1 108 LEU n 1 109 TRP n 1 110 ALA n 1 111 ARG n 1 112 ARG n 1 113 GLU n 1 114 ASN n 1 115 GLY n 1 116 SER n 1 117 VAL n 1 118 LYS n 1 119 TRP n 1 120 PHE n 1 121 CYS n 1 122 GLY n 1 123 GLN n 1 124 PRO n 1 125 VAL n 1 126 THR n 1 127 ARG n 1 128 THR n 1 129 ASP n 1 130 ASP n 1 131 ASP n 1 132 THR n 1 133 VAL n 1 134 ALA n 1 135 ASP n 1 136 ALA n 1 137 LYS n 1 138 ASP n 1 139 GLY n 1 140 LYS n 1 141 GLU n 1 142 ILE n 1 143 ASP n 1 144 THR n 1 145 LYS n 1 146 HIS n 1 147 LEU n 1 148 PRO n 1 149 SER n 1 150 THR n 1 151 CYS n 1 152 ARG n 1 153 ASP n 1 154 ASN n 1 155 PHE n 1 156 ASP n 1 157 ALA n 1 158 LYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Neisseria gonorrhoeae' _entity_src_nat.pdbx_ncbi_taxonomy_id 485 _entity_src_nat.genus Neisseria _entity_src_nat.species ? _entity_src_nat.strain MS11 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location EXTRACELLULAR _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle PILUS _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FMM1_NEIGO _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P02974 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASPPSDI KGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCRD NFDAK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PIL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02974 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 165 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 158 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2PIL _struct_ref_seq_dif.mon_id SEP _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 68 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P02974 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 75 _struct_ref_seq_dif.details 'modified residue' _struct_ref_seq_dif.pdbx_auth_seq_num 68 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLA 'D-saccharide, alpha linking' . alpha-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 HTO non-polymer . HEPTANE-1,2,3-TRIOL ? 'C7 H16 O3' 148.200 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MEA 'L-peptide linking' n N-METHYLPHENYLALANINE ? 'C10 H13 N O2' 179.216 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PT non-polymer . 'PLATINUM (II) ION' ? 'Pt 2' 195.078 SEP 'L-peptide linking' n PHOSPHOSERINE PHOSPHONOSERINE 'C3 H8 N O6 P' 185.072 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PIL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.16 _exptl_crystal.density_percent_sol 60. _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED FROM 60% PEG400, 50 MM CHESS, PH 8.0, 1% BETA-OCTYL GLUCOSIDE, 0.6% 1,2,3-HEPTANETRIOL.' # _diffrn.id 1 _diffrn.ambient_temp 290 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1993-05-15 _diffrn_detector.details 'BENT MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.07 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength 1.07 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2PIL _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.0 _reflns.d_resolution_high 2.6 _reflns.number_obs 6565 _reflns.number_all ? _reflns.percent_possible_obs 95. _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_netI_over_sigmaI 6.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.78 _reflns_shell.percent_possible_all 80.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.307 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2PIL _refine.ls_number_reflns_obs 6565 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 100000.0 _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.6 _refine.ls_percent_reflns_obs 95.0 _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 41.8 _refine.aniso_B[1][1] -.731 _refine.aniso_B[2][2] 18.443 _refine.aniso_B[3][3] -.639 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][3] 0.0 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;FITTING BEGAN WITH PDB MODEL 1AY2. PHOSPHOSERINE 68 WAS ADDED AND A BULK SOLVENT CORRECTION WAS APPLIED. THE EXPECTED N-TERMINAL METHYL-PHE WAS VERIFIED BY N-TERMINAL SEQUENCING BUT WAS NOT INCLUDED IN THE MODEL BECAUSE IT IS NOT APPARENT IN ELECTRON DENSITY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PIL _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 20.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1212 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1375 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.5 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 25.0 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.36 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 2.96 1.5 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 4.66 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 5.26 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 8.08 2.5 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.72 _refine_ls_shell.number_reflns_R_work 743 _refine_ls_shell.R_factor_R_work 0.312 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARAM19X_PO4G3P.PRO TOPH19.PEP 'X-RAY DIFFRACTION' 2 PARAM3_MOD.CHO TOPH3.CHO 'X-RAY DIFFRACTION' 3 ? HEPT123.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 2PIL _struct.title 'Crystallographic Structure of Phosphorylated Pilin from Neisseria: Phosphoserine Sites Modify Type IV Pilus Surface Chemistry' _struct.pdbx_descriptor 'TYPE 4 PILIN, HEPTANE-1,2,3-TRIOL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PIL _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'TYPE IV PILIN, FIBER-FORMING PROTEIN, MEMBRANE PROTEIN, DNA INDING PROTEIN, CONTRACTILE PROTEIN, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 3 ? HIS A 54 ? LEU A 3 HIS A 54 1 ? 52 HELX_P HELX_P2 2 ASN A 61 ? ALA A 64 ? ASN A 61 ALA A 64 1 ? 4 HELX_P HELX_P3 3 PRO A 70 ? ASP A 72 ? PRO A 70 ASP A 72 5 ? 3 HELX_P HELX_P4 4 ASN A 99 ? ILE A 101 ? ASN A 99 ILE A 101 5 ? 3 HELX_P HELX_P5 5 THR A 144 ? HIS A 146 ? THR A 144 HIS A 146 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 121 SG ? ? ? 1_555 A CYS 151 SG ? ? A CYS 121 A CYS 151 1_555 ? ? ? ? ? ? ? 2.011 ? ? covale1 covale both ? A MEA 1 C ? ? ? 1_555 A THR 2 N ? ? A MEA 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.407 ? ? covale2 covale one ? A SER 63 OG ? ? ? 1_555 B NAG . C1 ? ? A SER 63 B NAG 1 1_555 ? ? ? ? ? ? ? 1.395 ? O-Glycosylation covale3 covale both ? A ALA 67 C ? ? ? 1_555 A SEP 68 N ? ? A ALA 67 A SEP 68 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale4 covale both ? A SEP 68 C ? ? ? 1_555 A PRO 69 N ? ? A SEP 68 A PRO 69 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale5 covale both ? B NAG . O3 ? ? ? 1_555 B GLA . C1 ? ? B NAG 1 B GLA 2 1_555 ? ? ? ? ? ? ? 1.403 ? ? metalc1 metalc ? ? A HIS 54 NE2 ? ? ? 4_566 C PT . PT ? ? A HIS 54 A PT 200 1_555 ? ? ? ? ? ? ? 3.331 ? ? metalc2 metalc ? ? A HIS 54 NE2 ? ? ? 1_555 C PT . PT ? ? A HIS 54 A PT 200 1_555 ? ? ? ? ? ? ? 3.331 ? ? metalc3 metalc ? ? C PT . PT ? ? ? 1_555 E HOH . O ? ? A PT 200 A HOH 333 1_555 ? ? ? ? ? ? ? 2.709 ? ? metalc4 metalc ? ? C PT . PT ? ? ? 1_555 E HOH . O ? ? A PT 200 A HOH 333 4_566 ? ? ? ? ? ? ? 2.709 ? ? metalc5 metalc ? ? C PT . PT ? ? ? 1_555 E HOH . O ? ? A PT 200 A HOH 810 1_555 ? ? ? ? ? ? ? 1.447 ? ? metalc6 metalc ? ? C PT . PT ? ? ? 1_555 E HOH . O ? ? A PT 200 A HOH 810 4_566 ? ? ? ? ? ? ? 1.447 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 116 ? GLY A 122 ? SER A 116 GLY A 122 A 2 LYS A 105 ? GLU A 113 ? LYS A 105 GLU A 113 A 3 VAL A 87 ? MET A 92 ? VAL A 87 MET A 92 A 4 VAL A 78 ? LYS A 84 ? VAL A 78 LYS A 84 B 1 VAL A 125 ? ASP A 129 ? VAL A 125 ASP A 129 B 2 THR A 132 ? ASP A 135 ? THR A 132 ASP A 135 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 116 ? O SER A 116 N GLU A 113 ? N GLU A 113 A 2 3 O LEU A 106 ? O LEU A 106 N ALA A 90 ? N ALA A 90 A 3 4 O VAL A 87 ? O VAL A 87 N LYS A 84 ? N LYS A 84 B 1 2 O THR A 126 ? O THR A 126 N ALA A 134 ? N ALA A 134 # _database_PDB_matrix.entry_id 2PIL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PIL _atom_sites.fract_transf_matrix[1][1] 0.007838 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008259 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037230 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P PT S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MEA 1 1 1 MEA PHE A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 SEP 68 68 68 SEP SEP A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 TRP 109 109 109 TRP TRP A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 TRP 119 119 119 TRP TRP A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 CYS 121 121 121 CYS CYS A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 CYS 151 151 151 CYS CYS A . n A 1 152 ARG 152 152 152 ARG ARG A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 LYS 158 158 158 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PT 1 200 200 PT PT A . D 4 HTO 1 162 162 HTO HTO A . E 5 HOH 1 301 301 HOH HOH A . E 5 HOH 2 303 303 HOH HOH A . E 5 HOH 3 307 307 HOH HOH A . E 5 HOH 4 308 308 HOH HOH A . E 5 HOH 5 310 310 HOH HOH A . E 5 HOH 6 311 311 HOH HOH A . E 5 HOH 7 314 314 HOH HOH A . E 5 HOH 8 315 315 HOH HOH A . E 5 HOH 9 317 317 HOH HOH A . E 5 HOH 10 322 322 HOH HOH A . E 5 HOH 11 323 323 HOH HOH A . E 5 HOH 12 324 324 HOH HOH A . E 5 HOH 13 325 325 HOH HOH A . E 5 HOH 14 326 326 HOH HOH A . E 5 HOH 15 328 328 HOH HOH A . E 5 HOH 16 333 333 HOH HOH A . E 5 HOH 17 334 334 HOH HOH A . E 5 HOH 18 335 335 HOH HOH A . E 5 HOH 19 336 336 HOH HOH A . E 5 HOH 20 338 338 HOH HOH A . E 5 HOH 21 341 341 HOH HOH A . E 5 HOH 22 343 343 HOH HOH A . E 5 HOH 23 344 344 HOH HOH A . E 5 HOH 24 345 345 HOH HOH A . E 5 HOH 25 346 346 HOH HOH A . E 5 HOH 26 347 347 HOH HOH A . E 5 HOH 27 348 348 HOH HOH A . E 5 HOH 28 352 352 HOH HOH A . E 5 HOH 29 353 353 HOH HOH A . E 5 HOH 30 354 354 HOH HOH A . E 5 HOH 31 355 355 HOH HOH A . E 5 HOH 32 356 356 HOH HOH A . E 5 HOH 33 357 357 HOH HOH A . E 5 HOH 34 358 358 HOH HOH A . E 5 HOH 35 359 359 HOH HOH A . E 5 HOH 36 361 361 HOH HOH A . E 5 HOH 37 362 362 HOH HOH A . E 5 HOH 38 364 364 HOH HOH A . E 5 HOH 39 365 365 HOH HOH A . E 5 HOH 40 366 366 HOH HOH A . E 5 HOH 41 367 367 HOH HOH A . E 5 HOH 42 371 371 HOH HOH A . E 5 HOH 43 372 372 HOH HOH A . E 5 HOH 44 375 375 HOH HOH A . E 5 HOH 45 376 376 HOH HOH A . E 5 HOH 46 377 377 HOH HOH A . E 5 HOH 47 378 378 HOH HOH A . E 5 HOH 48 381 381 HOH HOH A . E 5 HOH 49 382 382 HOH HOH A . E 5 HOH 50 383 383 HOH HOH A . E 5 HOH 51 384 384 HOH HOH A . E 5 HOH 52 386 386 HOH HOH A . E 5 HOH 53 387 387 HOH HOH A . E 5 HOH 54 388 388 HOH HOH A . E 5 HOH 55 389 389 HOH HOH A . E 5 HOH 56 390 390 HOH HOH A . E 5 HOH 57 391 391 HOH HOH A . E 5 HOH 58 394 394 HOH HOH A . E 5 HOH 59 395 395 HOH HOH A . E 5 HOH 60 396 396 HOH HOH A . E 5 HOH 61 397 397 HOH HOH A . E 5 HOH 62 398 398 HOH HOH A . E 5 HOH 63 399 399 HOH HOH A . E 5 HOH 64 401 401 HOH HOH A . E 5 HOH 65 403 403 HOH HOH A . E 5 HOH 66 404 404 HOH HOH A . E 5 HOH 67 405 405 HOH HOH A . E 5 HOH 68 406 406 HOH HOH A . E 5 HOH 69 407 407 HOH HOH A . E 5 HOH 70 408 408 HOH HOH A . E 5 HOH 71 409 409 HOH HOH A . E 5 HOH 72 415 415 HOH HOH A . E 5 HOH 73 416 416 HOH HOH A . E 5 HOH 74 420 420 HOH HOH A . E 5 HOH 75 425 425 HOH HOH A . E 5 HOH 76 426 426 HOH HOH A . E 5 HOH 77 427 427 HOH HOH A . E 5 HOH 78 430 430 HOH HOH A . E 5 HOH 79 431 431 HOH HOH A . E 5 HOH 80 432 432 HOH HOH A . E 5 HOH 81 433 433 HOH HOH A . E 5 HOH 82 436 436 HOH HOH A . E 5 HOH 83 437 437 HOH HOH A . E 5 HOH 84 438 438 HOH HOH A . E 5 HOH 85 440 440 HOH HOH A . E 5 HOH 86 503 503 HOH HOH A . E 5 HOH 87 508 508 HOH HOH A . E 5 HOH 88 509 509 HOH HOH A . E 5 HOH 89 510 510 HOH HOH A . E 5 HOH 90 513 513 HOH HOH A . E 5 HOH 91 515 515 HOH HOH A . E 5 HOH 92 517 517 HOH HOH A . E 5 HOH 93 518 518 HOH HOH A . E 5 HOH 94 522 522 HOH HOH A . E 5 HOH 95 602 602 HOH HOH A . E 5 HOH 96 603 603 HOH HOH A . E 5 HOH 97 604 604 HOH HOH A . E 5 HOH 98 605 605 HOH HOH A . E 5 HOH 99 606 606 HOH HOH A . E 5 HOH 100 608 608 HOH HOH A . E 5 HOH 101 609 609 HOH HOH A . E 5 HOH 102 610 610 HOH HOH A . E 5 HOH 103 701 701 HOH HOH A . E 5 HOH 104 702 702 HOH HOH A . E 5 HOH 105 801 801 HOH HOH A . E 5 HOH 106 802 802 HOH HOH A . E 5 HOH 107 803 803 HOH HOH A . E 5 HOH 108 804 804 HOH HOH A . E 5 HOH 109 805 805 HOH HOH A . E 5 HOH 110 806 806 HOH HOH A . E 5 HOH 111 807 807 HOH HOH A . E 5 HOH 112 808 808 HOH HOH A . E 5 HOH 113 809 809 HOH HOH A . E 5 HOH 114 810 810 HOH HOH A . E 5 HOH 115 811 811 HOH HOH A . E 5 HOH 116 812 812 HOH HOH A . E 5 HOH 117 813 813 HOH HOH A . E 5 HOH 118 814 814 HOH HOH A . E 5 HOH 119 815 815 HOH HOH A . E 5 HOH 120 816 816 HOH HOH A . E 5 HOH 121 817 817 HOH HOH A . E 5 HOH 122 818 818 HOH HOH A . E 5 HOH 123 819 819 HOH HOH A . E 5 HOH 124 820 820 HOH HOH A . E 5 HOH 125 821 821 HOH HOH A . E 5 HOH 126 822 822 HOH HOH A . E 5 HOH 127 823 823 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A SER 63 A SER 63 ? SER 'GLYCOSYLATION SITE' 2 A MEA 1 A MEA 1 ? PHE N-METHYLPHENYLALANINE 3 A SEP 68 A SEP 68 ? SER PHOSPHOSERINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id PT _pdbx_struct_special_symmetry.auth_seq_id 200 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id PT _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 102.4 ? 2 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 72.5 ? 3 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 1_555 75.5 ? 4 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 4_566 75.5 ? 5 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 4_566 72.5 ? 6 O ? E HOH . ? A HOH 333 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 333 ? 4_566 127.7 ? 7 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 810 ? 1_555 140.4 ? 8 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 810 ? 1_555 81.3 ? 9 O ? E HOH . ? A HOH 333 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 810 ? 1_555 70.4 ? 10 O ? E HOH . ? A HOH 333 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 810 ? 1_555 140.4 ? 11 NE2 ? A HIS 54 ? A HIS 54 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 810 ? 4_566 81.3 ? 12 NE2 ? A HIS 54 ? A HIS 54 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 810 ? 4_566 140.4 ? 13 O ? E HOH . ? A HOH 333 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 810 ? 4_566 140.4 ? 14 O ? E HOH . ? A HOH 333 ? 4_566 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 810 ? 4_566 70.4 ? 15 O ? E HOH . ? A HOH 810 ? 1_555 PT ? C PT . ? A PT 200 ? 1_555 O ? E HOH . ? A HOH 810 ? 4_566 120.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-05-27 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_struct_conn_angle 14 4 'Structure model' pdbx_struct_special_symmetry 15 4 'Structure model' software 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_ref_seq_dif 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.occupancy' 14 4 'Structure model' '_atom_site.type_symbol' 15 4 'Structure model' '_chem_comp.name' 16 4 'Structure model' '_chem_comp.type' 17 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 33 4 'Structure model' '_pdbx_struct_conn_angle.value' 34 4 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 35 4 'Structure model' '_software.name' 36 4 'Structure model' '_struct_conn.pdbx_dist_value' 37 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 38 4 'Structure model' '_struct_conn.pdbx_role' 39 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 40 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 41 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 42 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 43 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 44 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 45 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 46 4 'Structure model' '_struct_conn.ptnr1_symmetry' 47 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 48 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 49 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 50 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 51 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 52 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 53 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 54 4 'Structure model' '_struct_conn.ptnr2_symmetry' 55 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 ROTAVATA/AGROVATA 'data reduction' . ? 2 X-PLOR 'model building' 3.8 ? 3 X-PLOR refinement 3.8 ? 4 CCP4 'data scaling' '(AGROVATA' ? 5 ROTAVATA 'data scaling' . ? 6 X-PLOR phasing 3.8 ? 7 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O1P _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 SEP _pdbx_validate_symm_contact.auth_seq_id_1 68 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 608 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_554 _pdbx_validate_symm_contact.dist 2.00 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 NE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 146 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 146 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.295 _pdbx_validate_rmsd_bond.bond_target_value 1.373 _pdbx_validate_rmsd_bond.bond_deviation -0.078 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A THR 2 ? ? CA A THR 2 ? ? C A THR 2 ? ? 134.28 111.00 23.28 2.70 N 2 1 CA A VAL 19 ? ? CB A VAL 19 ? ? CG2 A VAL 19 ? ? 101.46 110.90 -9.44 1.50 N 3 1 CB A TYR 27 ? ? CG A TYR 27 ? ? CD1 A TYR 27 ? ? 116.18 121.00 -4.82 0.60 N 4 1 CD1 A TRP 57 ? ? CG A TRP 57 ? ? CD2 A TRP 57 ? ? 112.10 106.30 5.80 0.80 N 5 1 CE2 A TRP 57 ? ? CD2 A TRP 57 ? ? CG A TRP 57 ? ? 101.70 107.30 -5.60 0.80 N 6 1 CB A TYR 77 ? ? CG A TYR 77 ? ? CD2 A TYR 77 ? ? 116.69 121.00 -4.31 0.60 N 7 1 CA A GLU 100 ? ? CB A GLU 100 ? ? CG A GLU 100 ? ? 128.58 113.40 15.18 2.20 N 8 1 CA A LEU 106 ? ? CB A LEU 106 ? ? CG A LEU 106 ? ? 136.94 115.30 21.64 2.30 N 9 1 CD1 A TRP 109 ? ? CG A TRP 109 ? ? CD2 A TRP 109 ? ? 112.96 106.30 6.66 0.80 N 10 1 CE2 A TRP 109 ? ? CD2 A TRP 109 ? ? CG A TRP 109 ? ? 101.28 107.30 -6.02 0.80 N 11 1 CA A GLU 113 ? ? C A GLU 113 ? ? N A ASN 114 ? ? 102.92 117.20 -14.28 2.20 Y 12 1 CD1 A TRP 119 ? ? CG A TRP 119 ? ? CD2 A TRP 119 ? ? 113.24 106.30 6.94 0.80 N 13 1 CE2 A TRP 119 ? ? CD2 A TRP 119 ? ? CG A TRP 119 ? ? 101.16 107.30 -6.14 0.80 N 14 1 CG A TRP 119 ? ? CD2 A TRP 119 ? ? CE3 A TRP 119 ? ? 139.84 133.90 5.94 0.90 N 15 1 NE A ARG 127 ? ? CZ A ARG 127 ? ? NH1 A ARG 127 ? ? 124.08 120.30 3.78 0.50 N 16 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH2 A ARG 152 ? ? 116.17 120.30 -4.13 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 113 ? ? -111.85 75.46 2 1 ASN A 114 ? ? -0.78 99.91 3 1 ALA A 136 ? ? -115.64 63.84 4 1 PRO A 148 ? ? -48.42 154.99 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 50 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.101 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id MEA _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id C1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id MEA _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id C1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 161 n B 2 GLA 2 B GLA 2 ? GAL 160 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpa GLA 'COMMON NAME' GMML 1.0 a-D-galactopyranose GLA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Galp GLA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGalpa1-3DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a2112h-1a_1-5]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(3+1)][b-D-GlcpNAc]{[(3+1)][a-D-Galp]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GLA _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 GLA 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PLATINUM (II) ION' PT 4 HEPTANE-1,2,3-TRIOL HTO 5 water HOH #