data_2Q1R # _entry.id 2Q1R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Q1R pdb_00002q1r 10.2210/pdb2q1r/pdb NDB AR0079 ? ? RCSB RCSB043040 ? ? WWPDB D_1000043040 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq 7 3 'Structure model' struct_site 8 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.value' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 3 'Structure model' '_struct_ref_seq.db_align_beg' 9 3 'Structure model' '_struct_ref_seq.db_align_end' 10 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 11 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 12 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Q1R _pdbx_database_status.recvd_initial_deposition_date 2007-05-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, F.' 1 'Pallan, P.S.' 2 # _citation.id primary _citation.title ;Crystal structure, stability and in vitro RNAi activity of oligoribonucleotides containing the ribo-difluorotoluyl nucleotide: insights into substrate requirements by the human RISC Ago2 enzyme. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 6424 _citation.page_last 6438 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17881374 _citation.pdbx_database_id_DOI 10.1093/nar/gkm664 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, F.' 1 ? primary 'Pallan, P.S.' 2 ? primary 'Maier, M.A.' 3 ? primary 'Rajeev, K.G.' 4 ? primary 'Mathieu, S.L.' 5 ? primary 'Kreutz, C.' 6 ? primary 'Fan, Y.' 7 ? primary 'Sanghvi, J.' 8 ? primary 'Micura, R.' 9 ? primary 'Rozners, E.' 10 ? primary 'Manoharan, M.' 11 ? primary 'Egli, M.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3') ; 3851.360 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGCGAAUUAGCG _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUUAGCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 A n 1 6 A n 1 7 U n 1 8 U n 1 9 A n 1 10 G n 1 11 C n 1 12 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1001 1001 C C A . n A 1 2 G 2 1002 1002 G G A . n A 1 3 C 3 1003 1003 C C A . n A 1 4 G 4 1004 1004 G G A . n A 1 5 A 5 1005 1005 A A A . n A 1 6 A 6 1006 1006 A A A . n A 1 7 U 7 1007 1007 U U A . n A 1 8 U 8 1008 1008 U U A . n A 1 9 A 9 1009 1009 A A A . n A 1 10 G 10 1010 1010 G G A . n A 1 11 C 11 1011 1011 C C A . n A 1 12 G 12 1012 1012 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 8001 8001 MG MG A . C 2 MG 1 8002 8002 MG MG A . D 3 HOH 1 9001 9001 HOH HOH A . D 3 HOH 2 9002 9002 HOH HOH A . D 3 HOH 3 9003 9003 HOH HOH A . D 3 HOH 4 9004 9004 HOH HOH A . D 3 HOH 5 9005 9005 HOH HOH A . D 3 HOH 6 9006 9006 HOH HOH A . D 3 HOH 7 9007 9007 HOH HOH A . D 3 HOH 8 9008 9008 HOH HOH A . D 3 HOH 9 9009 9009 HOH HOH A . D 3 HOH 10 9010 9010 HOH HOH A . D 3 HOH 11 9011 9011 HOH HOH A . D 3 HOH 12 9012 9012 HOH HOH A . D 3 HOH 13 9013 9013 HOH HOH A . D 3 HOH 14 9014 9014 HOH HOH A . D 3 HOH 15 9015 9015 HOH HOH A . D 3 HOH 16 9016 9016 HOH HOH A . D 3 HOH 17 9017 9017 HOH HOH A . D 3 HOH 18 9018 9018 HOH HOH A . D 3 HOH 19 9019 9019 HOH HOH A . D 3 HOH 20 9020 9020 HOH HOH A . D 3 HOH 21 9021 9021 HOH HOH A . D 3 HOH 22 9022 9022 HOH HOH A . D 3 HOH 23 9023 9023 HOH HOH A . D 3 HOH 24 9024 9024 HOH HOH A . D 3 HOH 25 9025 9025 HOH HOH A . D 3 HOH 26 9026 9026 HOH HOH A . D 3 HOH 27 9027 9027 HOH HOH A . D 3 HOH 28 9028 9028 HOH HOH A . D 3 HOH 29 9029 9029 HOH HOH A . D 3 HOH 30 9030 9030 HOH HOH A . D 3 HOH 31 9031 9031 HOH HOH A . D 3 HOH 32 9032 9032 HOH HOH A . D 3 HOH 33 9033 9033 HOH HOH A . D 3 HOH 34 9034 9034 HOH HOH A . D 3 HOH 35 9035 9035 HOH HOH A . D 3 HOH 36 9036 9036 HOH HOH A . D 3 HOH 37 9037 9037 HOH HOH A . D 3 HOH 38 9038 9038 HOH HOH A . D 3 HOH 39 9039 9039 HOH HOH A . D 3 HOH 40 9040 9040 HOH HOH A . D 3 HOH 41 9041 9041 HOH HOH A . D 3 HOH 42 9042 9042 HOH HOH A . D 3 HOH 43 9043 9043 HOH HOH A . D 3 HOH 44 9044 9044 HOH HOH A . D 3 HOH 45 9045 9045 HOH HOH A . D 3 HOH 46 9046 9046 HOH HOH A . D 3 HOH 47 9047 9047 HOH HOH A . D 3 HOH 48 9048 9048 HOH HOH A . D 3 HOH 49 9049 9049 HOH HOH A . D 3 HOH 50 9050 9050 HOH HOH A . D 3 HOH 51 9051 9052 HOH HOH A . D 3 HOH 52 9052 9053 HOH HOH A . D 3 HOH 53 9053 9054 HOH HOH A . D 3 HOH 54 9054 9055 HOH HOH A . D 3 HOH 55 9055 9056 HOH HOH A . D 3 HOH 56 9056 9058 HOH HOH A . D 3 HOH 57 9057 9059 HOH HOH A . D 3 HOH 58 9058 9060 HOH HOH A . D 3 HOH 59 9059 9063 HOH HOH A . D 3 HOH 60 9060 9064 HOH HOH A . D 3 HOH 61 9061 9065 HOH HOH A . D 3 HOH 62 9062 9066 HOH HOH A . D 3 HOH 63 9063 9067 HOH HOH A . D 3 HOH 64 9064 9068 HOH HOH A . D 3 HOH 65 9065 9069 HOH HOH A . D 3 HOH 66 9066 9070 HOH HOH A . D 3 HOH 67 9067 9071 HOH HOH A . D 3 HOH 68 9068 9072 HOH HOH A . D 3 HOH 69 9069 9073 HOH HOH A . D 3 HOH 70 9070 9074 HOH HOH A . D 3 HOH 71 9071 9075 HOH HOH A . D 3 HOH 72 9072 9076 HOH HOH A . D 3 HOH 73 9073 9078 HOH HOH A . D 3 HOH 74 9074 9079 HOH HOH A . D 3 HOH 75 9075 9080 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 EPMR phasing . ? 2 SHELXL-97 refinement . ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 # _cell.entry_id 2Q1R _cell.length_a 41.339 _cell.length_b 34.886 _cell.length_c 32.118 _cell.angle_alpha 90.00 _cell.angle_beta 129.32 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Q1R _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2Q1R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_percent_sol 47.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;Droplets containing 0.5 mM oligonucleotide, 5% MPD, 20 mM sodium cacodylate, pH 7.0, 6 mM spermine-4HCl, 40 mM sodium chloride and 10 mM magnesium chloride were equilibrated against a reservoir of 35% MPD., VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 '5% MPD' ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 spermine-4HCl ? ? ? 1 4 1 'sodium chloride' ? ? ? 1 5 1 'magnesium chloride' ? ? ? 1 6 2 '35% MPD' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2004-03-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9790 # _reflns.entry_id 2Q1R _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.12 _reflns.d_resolution_low 24.84 _reflns.number_all 13446 _reflns.number_obs 13280 _reflns.percent_possible_obs 96.4 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.12 _reflns_shell.d_res_low 1.16 _reflns_shell.percent_possible_all 89.3 _reflns_shell.Rmerge_I_obs 0.277 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1330 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2Q1R _refine.ls_d_res_high 1.12 _refine.ls_d_res_low 10 _refine.pdbx_ls_sigma_F 4 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 13514 _refine.ls_number_reflns_obs 12597 _refine.ls_number_reflns_R_free 630 _refine.ls_percent_reflns_obs 93.2 _refine.ls_R_factor_all 0.149 _refine.ls_R_factor_obs 0.144 _refine.ls_R_factor_R_work 0.142 _refine.ls_R_factor_R_free 0.182 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'A native A-RNA' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 255 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 332 _refine_hist.d_res_high 1.12 _refine_hist.d_res_low 10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_angle_d 0.031 ? ? ? 'X-RAY DIFFRACTION' ? s_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 2Q1R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 2Q1R _struct.title 'Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Q1R _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'G-A mismatch, RNA, RNAi' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2Q1R _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CGCGAAUUAGCG _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 2Q1R _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Q1R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2Q1R _struct_ref_seq.db_align_beg 1001 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1012 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1001 _struct_ref_seq.pdbx_auth_seq_align_end 1012 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1.0000000000 0.0000000000 0.0000000000 82.6780000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a duplex and correspnds to the crystallographic asymmetric unit, hence no symmetry operators are needed' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8001 A HOH 9005 1_555 ? ? ? ? ? ? ? 2.077 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8001 A HOH 9023 1_555 ? ? ? ? ? ? ? 1.827 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8001 A HOH 9024 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8001 A HOH 9045 1_555 ? ? ? ? ? ? ? 1.852 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8001 A HOH 9046 1_555 ? ? ? ? ? ? ? 2.084 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8001 A HOH 9047 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8002 A HOH 9001 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8002 A HOH 9002 1_555 ? ? ? ? ? ? ? 1.966 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8002 A HOH 9009 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8002 A HOH 9019 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8002 A HOH 9021 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8002 A HOH 9032 1_555 ? ? ? ? ? ? ? 2.162 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 12 N1 ? ? A C 1001 A G 1012 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 12 O6 ? ? A C 1001 A G 1012 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 12 N2 ? ? A C 1001 A G 1012 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 11 N3 ? ? A G 1002 A C 1011 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 11 O2 ? ? A G 1002 A C 1011 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 11 N4 ? ? A G 1002 A C 1011 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 10 N1 ? ? A C 1003 A G 1010 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 10 O6 ? ? A C 1003 A G 1010 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 10 N2 ? ? A C 1003 A G 1010 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A A 9 N1 ? ? A G 1004 A A 1009 2_755 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A A 9 N6 ? ? A G 1004 A A 1009 2_755 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 8 N3 ? ? A A 1005 A U 1008 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 8 O4 ? ? A A 1005 A U 1008 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 7 N3 ? ? A A 1006 A U 1007 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 7 O4 ? ? A A 1006 A U 1007 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 6 N1 ? ? A U 1007 A A 1006 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 6 N6 ? ? A U 1007 A A 1006 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 5 N1 ? ? A U 1008 A A 1005 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 5 N6 ? ? A U 1008 A A 1005 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 4 N1 ? ? A A 1009 A G 1004 2_755 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 4 O6 ? ? A A 1009 A G 1004 2_755 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 3 N3 ? ? A G 1010 A C 1003 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 3 O2 ? ? A G 1010 A C 1003 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 3 N4 ? ? A G 1010 A C 1003 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 2 N1 ? ? A C 1011 A G 1002 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 2 O6 ? ? A C 1011 A G 1002 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 2 N2 ? ? A C 1011 A G 1002 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 1 N3 ? ? A G 1012 A C 1001 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 1 O2 ? ? A G 1012 A C 1001 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 1 N4 ? ? A G 1012 A C 1001 2_755 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 9005 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9023 ? 1_555 92.9 ? 2 O ? D HOH . ? A HOH 9005 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9024 ? 1_555 92.3 ? 3 O ? D HOH . ? A HOH 9023 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9024 ? 1_555 80.5 ? 4 O ? D HOH . ? A HOH 9005 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9045 ? 1_555 94.1 ? 5 O ? D HOH . ? A HOH 9023 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9045 ? 1_555 159.1 ? 6 O ? D HOH . ? A HOH 9024 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9045 ? 1_555 79.6 ? 7 O ? D HOH . ? A HOH 9005 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9046 ? 1_555 179.5 ? 8 O ? D HOH . ? A HOH 9023 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9046 ? 1_555 87.0 ? 9 O ? D HOH . ? A HOH 9024 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9046 ? 1_555 88.2 ? 10 O ? D HOH . ? A HOH 9045 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9046 ? 1_555 86.1 ? 11 O ? D HOH . ? A HOH 9005 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9047 ? 1_555 87.0 ? 12 O ? D HOH . ? A HOH 9023 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9047 ? 1_555 105.7 ? 13 O ? D HOH . ? A HOH 9024 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9047 ? 1_555 173.8 ? 14 O ? D HOH . ? A HOH 9045 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9047 ? 1_555 94.3 ? 15 O ? D HOH . ? A HOH 9046 ? 1_555 MG ? B MG . ? A MG 8001 ? 1_555 O ? D HOH . ? A HOH 9047 ? 1_555 92.5 ? 16 O ? D HOH . ? A HOH 9001 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9002 ? 1_555 89.1 ? 17 O ? D HOH . ? A HOH 9001 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9009 ? 1_555 176.4 ? 18 O ? D HOH . ? A HOH 9002 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9009 ? 1_555 87.5 ? 19 O ? D HOH . ? A HOH 9001 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9019 ? 1_555 95.6 ? 20 O ? D HOH . ? A HOH 9002 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9019 ? 1_555 95.3 ? 21 O ? D HOH . ? A HOH 9009 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9019 ? 1_555 83.4 ? 22 O ? D HOH . ? A HOH 9001 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9021 ? 1_555 93.8 ? 23 O ? D HOH . ? A HOH 9002 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9021 ? 1_555 91.8 ? 24 O ? D HOH . ? A HOH 9009 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9021 ? 1_555 87.7 ? 25 O ? D HOH . ? A HOH 9019 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9021 ? 1_555 168.3 ? 26 O ? D HOH . ? A HOH 9001 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9032 ? 1_555 93.2 ? 27 O ? D HOH . ? A HOH 9002 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9032 ? 1_555 171.8 ? 28 O ? D HOH . ? A HOH 9009 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9032 ? 1_555 90.3 ? 29 O ? D HOH . ? A HOH 9019 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9032 ? 1_555 92.3 ? 30 O ? D HOH . ? A HOH 9021 ? 1_555 MG ? C MG . ? A MG 8002 ? 1_555 O ? D HOH . ? A HOH 9032 ? 1_555 80.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 8001 ? 6 'BINDING SITE FOR RESIDUE MG A 8001' AC2 Software A MG 8002 ? 6 'BINDING SITE FOR RESIDUE MG A 8002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 9005 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 9023 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 9024 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 9045 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 9046 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 9047 . ? 1_555 ? 7 AC2 6 HOH D . ? HOH A 9001 . ? 1_555 ? 8 AC2 6 HOH D . ? HOH A 9002 . ? 1_555 ? 9 AC2 6 HOH D . ? HOH A 9009 . ? 1_555 ? 10 AC2 6 HOH D . ? HOH A 9019 . ? 1_555 ? 11 AC2 6 HOH D . ? HOH A 9021 . ? 1_555 ? 12 AC2 6 HOH D . ? HOH A 9032 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "C2'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1002 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1002 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.461 _pdbx_validate_rmsd_bond.bond_target_value 1.526 _pdbx_validate_rmsd_bond.bond_deviation -0.065 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.008 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A G 1002 ? ? "C2'" A G 1002 ? ? "C1'" A G 1002 ? ? 96.91 101.30 -4.39 0.70 N 2 1 C2 A A 1005 ? ? N3 A A 1005 ? ? C4 A A 1005 ? ? 114.25 110.60 3.65 0.50 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 9033 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2Q1R 'double helix' 2Q1R 'a-form double helix' 2Q1R 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 12 2_755 0.159 -0.084 -0.045 9.147 -17.370 0.498 1 A_C1001:G1012_A A 1001 ? A 1012 ? 19 1 1 A G 2 1_555 A C 11 2_755 -0.297 -0.153 0.005 -5.080 -18.047 0.947 2 A_G1002:C1011_A A 1002 ? A 1011 ? 19 1 1 A C 3 1_555 A G 10 2_755 0.159 -0.138 0.211 -2.446 -14.750 -1.971 3 A_C1003:G1010_A A 1003 ? A 1010 ? 19 1 1 A G 4 1_555 A A 9 2_755 -0.001 1.500 -0.292 3.264 -10.075 -17.795 4 A_G1004:A1009_A A 1004 ? A 1009 ? 8 ? 1 A A 5 1_555 A U 8 2_755 0.105 -0.027 0.125 1.036 -15.573 -5.152 5 A_A1005:U1008_A A 1005 ? A 1008 ? 20 1 1 A A 6 1_555 A U 7 2_755 0.038 -0.078 0.049 2.264 -25.321 -1.661 6 A_A1006:U1007_A A 1006 ? A 1007 ? 20 1 1 A U 7 1_555 A A 6 2_755 -0.038 -0.078 0.049 -2.264 -25.321 -1.661 7 A_U1007:A1006_A A 1007 ? A 1006 ? 20 1 1 A U 8 1_555 A A 5 2_755 -0.105 -0.027 0.125 -1.036 -15.573 -5.152 8 A_U1008:A1005_A A 1008 ? A 1005 ? 20 1 1 A A 9 1_555 A G 4 2_755 0.001 1.500 -0.292 -3.264 -10.075 -17.795 9 A_A1009:G1004_A A 1009 ? A 1004 ? 8 ? 1 A G 10 1_555 A C 3 2_755 -0.159 -0.138 0.211 2.446 -14.750 -1.971 10 A_G1010:C1003_A A 1010 ? A 1003 ? 19 1 1 A C 11 1_555 A G 2 2_755 0.297 -0.153 0.005 5.080 -18.048 0.947 11 A_C1011:G1002_A A 1011 ? A 1002 ? 19 1 1 A G 12 1_555 A C 1 2_755 -0.159 -0.084 -0.045 -9.147 -17.370 0.498 12 A_G1012:C1001_A A 1012 ? A 1001 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 12 2_755 A G 2 1_555 A C 11 2_755 -0.412 -1.599 3.432 -3.057 13.673 32.919 -4.516 0.245 2.611 22.880 5.116 35.700 1 AA_C1001G1002:C1011G1012_AA A 1001 ? A 1012 ? A 1002 ? A 1011 ? 1 A G 2 1_555 A C 11 2_755 A C 3 1_555 A G 10 2_755 -0.414 -1.321 3.185 -2.099 3.102 35.278 -2.605 0.385 3.080 5.100 3.451 35.470 2 AA_G1002C1003:G1010C1011_AA A 1002 ? A 1011 ? A 1003 ? A 1010 ? 1 A C 3 1_555 A G 10 2_755 A G 4 1_555 A A 9 2_755 -0.988 -1.394 3.112 2.281 10.910 26.028 -5.024 2.477 2.262 22.931 -4.795 28.276 3 AA_C1003G1004:A1009G1010_AA A 1003 ? A 1010 ? A 1004 ? A 1009 ? 1 A G 4 1_555 A A 9 2_755 A A 5 1_555 A U 8 2_755 0.453 -1.625 3.239 -3.315 13.227 29.760 -4.915 -1.313 2.269 24.218 6.070 32.671 4 AA_G1004A1005:U1008A1009_AA A 1004 ? A 1009 ? A 1005 ? A 1008 ? 1 A A 5 1_555 A U 8 2_755 A A 6 1_555 A U 7 2_755 0.187 -0.908 3.179 1.871 7.895 35.626 -2.481 -0.053 2.924 12.702 -3.010 36.509 5 AA_A1005A1006:U1007U1008_AA A 1005 ? A 1008 ? A 1006 ? A 1007 ? 1 A A 6 1_555 A U 7 2_755 A U 7 1_555 A A 6 2_755 0.000 -1.114 3.357 0.000 10.373 31.494 -3.660 0.000 2.857 18.494 0.000 33.117 6 AA_A1006U1007:A1006U1007_AA A 1006 ? A 1007 ? A 1007 ? A 1006 ? 1 A U 7 1_555 A A 6 2_755 A U 8 1_555 A A 5 2_755 -0.187 -0.908 3.179 -1.871 7.895 35.626 -2.481 0.053 2.924 12.702 3.010 36.509 7 AA_U1007U1008:A1005A1006_AA A 1007 ? A 1006 ? A 1008 ? A 1005 ? 1 A U 8 1_555 A A 5 2_755 A A 9 1_555 A G 4 2_755 -0.453 -1.625 3.239 3.315 13.227 29.760 -4.915 1.313 2.269 24.218 -6.070 32.671 8 AA_U1008A1009:G1004A1005_AA A 1008 ? A 1005 ? A 1009 ? A 1004 ? 1 A A 9 1_555 A G 4 2_755 A G 10 1_555 A C 3 2_755 0.988 -1.394 3.112 -2.281 10.910 26.028 -5.024 -2.477 2.262 22.931 4.795 28.276 9 AA_A1009G1010:C1003G1004_AA A 1009 ? A 1004 ? A 1010 ? A 1003 ? 1 A G 10 1_555 A C 3 2_755 A C 11 1_555 A G 2 2_755 0.414 -1.321 3.185 2.098 3.102 35.278 -2.605 -0.385 3.080 5.100 -3.450 35.470 10 AA_G1010C1011:G1002C1003_AA A 1010 ? A 1003 ? A 1011 ? A 1002 ? 1 A C 11 1_555 A G 2 2_755 A G 12 1_555 A C 1 2_755 0.412 -1.599 3.432 3.057 13.673 32.919 -4.516 -0.245 2.611 22.880 -5.116 35.700 11 AA_C1011G1012:C1001G1002_AA A 1011 ? A 1002 ? A 1012 ? A 1001 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'A native A-RNA' # _atom_sites.entry_id 2Q1R _atom_sites.fract_transf_matrix[1][1] 0.024190 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.019814 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028665 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040246 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_