HEADER TRANSCRIPTION 01-JUN-07 2Q5G TITLE LIGAND BINDING DOMAIN OF PPAR DELTA RECEPTOR IN COMPLEX WITH A PARTIAL TITLE 2 AGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR DELTA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: PPAR-DELTA, PPAR- BETA, NUCLEAR HORMONE RECEPTOR 1, NUC1, COMPND 6 NUCI; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: PPARD, NR1C2, PPARB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS PPAR DELTA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR I.PETTERSSON,P.SAUERBERG,E.JOHANSSON,I.HOFFMAN,L.W.TARI,M.J.HUNTER, AUTHOR 2 J.NIX REVDAT 5 30-AUG-23 2Q5G 1 COMPND REMARK HETNAM REVDAT 4 24-JAN-18 2Q5G 1 AUTHOR REVDAT 3 13-JUL-11 2Q5G 1 VERSN REVDAT 2 24-FEB-09 2Q5G 1 VERSN REVDAT 1 03-JUN-08 2Q5G 0 JRNL AUTH I.PETTERSSON,S.EBDRUP,M.HAVRANEK,P.PIHERA,M.KORINEK, JRNL AUTH 2 J.P.MOGENSEN,C.B.JEPPESEN,E.JOHANSSON,P.SAUERBERG JRNL TITL DESIGN OF A PARTIAL PPARDELTA AGONIST. JRNL REF BIOORG.MED.CHEM.LETT. V. 17 4625 2007 JRNL REFN ISSN 0960-894X JRNL PMID 17560785 JRNL DOI 10.1016/J.BMCL.2007.05.079 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 16225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.20000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -3.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.307 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.054 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3961 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5363 ; 1.625 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 6.165 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;35.517 ;24.046 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 669 ;19.938 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.516 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 611 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2936 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1849 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2724 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.108 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2444 ; 0.846 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3846 ; 1.436 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1739 ; 1.532 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1517 ; 2.476 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Q5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.4LDZ REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16233 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 53.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.530 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.47 REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 2GWX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.28850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.80150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.28850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.80150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -56.63496 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.80693 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 GLY A 201 REMARK 465 SER A 202 REMARK 465 GLN A 203 REMARK 465 TYR A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 GLN A 207 REMARK 465 VAL A 208 REMARK 465 ALA A 209 REMARK 465 SER A 242 REMARK 465 HIS A 243 REMARK 465 LYS A 265 REMARK 465 GLN A 266 REMARK 465 LEU A 267 REMARK 465 VAL A 268 REMARK 465 ASN A 269 REMARK 465 GLY A 270 REMARK 465 LEU A 271 REMARK 465 PRO A 272 REMARK 465 PRO A 273 REMARK 465 TYR A 274 REMARK 465 LYS A 275 REMARK 465 THR A 459 REMARK 465 GLU A 460 REMARK 465 THR A 461 REMARK 465 GLU A 462 REMARK 465 THR A 463 REMARK 465 SER A 464 REMARK 465 LEU A 465 REMARK 465 HIS A 466 REMARK 465 ASP A 475 REMARK 465 MET A 476 REMARK 465 TYR A 477 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 GLY B 201 REMARK 465 SER B 202 REMARK 465 GLN B 203 REMARK 465 TYR B 204 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 GLN B 207 REMARK 465 VAL B 208 REMARK 465 LYS B 240 REMARK 465 ALA B 241 REMARK 465 SER B 242 REMARK 465 HIS B 243 REMARK 465 THR B 244 REMARK 465 LYS B 265 REMARK 465 GLN B 266 REMARK 465 LEU B 267 REMARK 465 VAL B 268 REMARK 465 ASN B 269 REMARK 465 GLY B 270 REMARK 465 LEU B 271 REMARK 465 PRO B 272 REMARK 465 PRO B 273 REMARK 465 TYR B 274 REMARK 465 LYS B 275 REMARK 465 GLU B 460 REMARK 465 THR B 461 REMARK 465 GLU B 462 REMARK 465 THR B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 HIS B 466 REMARK 465 PRO B 467 REMARK 465 LEU B 468 REMARK 465 LEU B 469 REMARK 465 GLN B 470 REMARK 465 GLU B 471 REMARK 465 ILE B 472 REMARK 465 TYR B 473 REMARK 465 LYS B 474 REMARK 465 ASP B 475 REMARK 465 MET B 476 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 231 CD CE NZ REMARK 470 LYS A 260 CE NZ REMARK 470 GLN A 286 CD OE1 NE2 REMARK 470 ARG A 455 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 456 CG1 CG2 CD1 REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 LYS A 458 CG CD CE NZ REMARK 470 LYS A 474 CD CE NZ REMARK 470 LYS B 212 CE NZ REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 LYS B 224 CE NZ REMARK 470 LYS B 232 CD CE NZ REMARK 470 LYS B 358 CD CE NZ REMARK 470 GLN B 429 CG CD OE1 NE2 REMARK 470 ARG B 455 CD NE CZ NH1 NH2 REMARK 470 LYS B 457 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 394 CB CYS A 394 SG -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 393 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 342 77.63 48.77 REMARK 500 ASN A 343 63.33 7.41 REMARK 500 PRO A 359 44.98 -93.76 REMARK 500 ARG A 455 14.10 -67.54 REMARK 500 CYS B 287 -74.25 -7.93 REMARK 500 SER B 355 39.51 -82.92 REMARK 500 LYS B 457 45.81 -77.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FA B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GWX RELATED DB: PDB DBREF 2Q5G A 201 477 UNP Q03181 PPARD_HUMAN 165 441 DBREF 2Q5G B 201 477 UNP Q03181 PPARD_HUMAN 165 441 SEQADV 2Q5G HIS A 195 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS A 196 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS A 197 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS A 198 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS A 199 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS A 200 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS B 195 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS B 196 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS B 197 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS B 198 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS B 199 UNP Q03181 CLONING ARTIFACT SEQADV 2Q5G HIS B 200 UNP Q03181 CLONING ARTIFACT SEQRES 1 A 283 HIS HIS HIS HIS HIS HIS GLY SER GLN TYR ASN PRO GLN SEQRES 2 A 283 VAL ALA ASP LEU LYS ALA PHE SER LYS HIS ILE TYR ASN SEQRES 3 A 283 ALA TYR LEU LYS ASN PHE ASN MET THR LYS LYS LYS ALA SEQRES 4 A 283 ARG SER ILE LEU THR GLY LYS ALA SER HIS THR ALA PRO SEQRES 5 A 283 PHE VAL ILE HIS ASP ILE GLU THR LEU TRP GLN ALA GLU SEQRES 6 A 283 LYS GLY LEU VAL TRP LYS GLN LEU VAL ASN GLY LEU PRO SEQRES 7 A 283 PRO TYR LYS GLU ILE SER VAL HIS VAL PHE TYR ARG CYS SEQRES 8 A 283 GLN CYS THR THR VAL GLU THR VAL ARG GLU LEU THR GLU SEQRES 9 A 283 PHE ALA LYS SER ILE PRO SER PHE SER SER LEU PHE LEU SEQRES 10 A 283 ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU SEQRES 11 A 283 ALA ILE PHE ALA MET LEU ALA SER ILE VAL ASN LYS ASP SEQRES 12 A 283 GLY LEU LEU VAL ALA ASN GLY SER GLY PHE VAL THR ARG SEQRES 13 A 283 GLU PHE LEU ARG SER LEU ARG LYS PRO PHE SER ASP ILE SEQRES 14 A 283 ILE GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA SEQRES 15 A 283 LEU GLU LEU ASP ASP SER ASP LEU ALA LEU PHE ILE ALA SEQRES 16 A 283 ALA ILE ILE LEU CYS GLY ASP ARG PRO GLY LEU MET ASN SEQRES 17 A 283 VAL PRO ARG VAL GLU ALA ILE GLN ASP THR ILE LEU ARG SEQRES 18 A 283 ALA LEU GLU PHE HIS LEU GLN ALA ASN HIS PRO ASP ALA SEQRES 19 A 283 GLN TYR LEU PHE PRO LYS LEU LEU GLN LYS MET ALA ASP SEQRES 20 A 283 LEU ARG GLN LEU VAL THR GLU HIS ALA GLN MET MET GLN SEQRES 21 A 283 ARG ILE LYS LYS THR GLU THR GLU THR SER LEU HIS PRO SEQRES 22 A 283 LEU LEU GLN GLU ILE TYR LYS ASP MET TYR SEQRES 1 B 283 HIS HIS HIS HIS HIS HIS GLY SER GLN TYR ASN PRO GLN SEQRES 2 B 283 VAL ALA ASP LEU LYS ALA PHE SER LYS HIS ILE TYR ASN SEQRES 3 B 283 ALA TYR LEU LYS ASN PHE ASN MET THR LYS LYS LYS ALA SEQRES 4 B 283 ARG SER ILE LEU THR GLY LYS ALA SER HIS THR ALA PRO SEQRES 5 B 283 PHE VAL ILE HIS ASP ILE GLU THR LEU TRP GLN ALA GLU SEQRES 6 B 283 LYS GLY LEU VAL TRP LYS GLN LEU VAL ASN GLY LEU PRO SEQRES 7 B 283 PRO TYR LYS GLU ILE SER VAL HIS VAL PHE TYR ARG CYS SEQRES 8 B 283 GLN CYS THR THR VAL GLU THR VAL ARG GLU LEU THR GLU SEQRES 9 B 283 PHE ALA LYS SER ILE PRO SER PHE SER SER LEU PHE LEU SEQRES 10 B 283 ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU SEQRES 11 B 283 ALA ILE PHE ALA MET LEU ALA SER ILE VAL ASN LYS ASP SEQRES 12 B 283 GLY LEU LEU VAL ALA ASN GLY SER GLY PHE VAL THR ARG SEQRES 13 B 283 GLU PHE LEU ARG SER LEU ARG LYS PRO PHE SER ASP ILE SEQRES 14 B 283 ILE GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA SEQRES 15 B 283 LEU GLU LEU ASP ASP SER ASP LEU ALA LEU PHE ILE ALA SEQRES 16 B 283 ALA ILE ILE LEU CYS GLY ASP ARG PRO GLY LEU MET ASN SEQRES 17 B 283 VAL PRO ARG VAL GLU ALA ILE GLN ASP THR ILE LEU ARG SEQRES 18 B 283 ALA LEU GLU PHE HIS LEU GLN ALA ASN HIS PRO ASP ALA SEQRES 19 B 283 GLN TYR LEU PHE PRO LYS LEU LEU GLN LYS MET ALA ASP SEQRES 20 B 283 LEU ARG GLN LEU VAL THR GLU HIS ALA GLN MET MET GLN SEQRES 21 B 283 ARG ILE LYS LYS THR GLU THR GLU THR SER LEU HIS PRO SEQRES 22 B 283 LEU LEU GLN GLU ILE TYR LYS ASP MET TYR HET 1FA A 501 42 HET 1FA B 502 42 HETNAM 1FA [(7-{[2-(3-MORPHOLIN-4-YLPROP-1-YN-1-YL)-6-{[4- HETNAM 2 1FA (TRIFLUOROMETHYL)PHENYL]ETHYNYL}PYRIDIN-4-YL]THIO}-2, HETNAM 3 1FA 3-DIHYDRO-1H-INDEN- 4-YL)OXY]ACETIC ACID HETSYN 1FA {7-[2-(3-MORPHOLIN-4-YL-PROP-1-YNYL)-6-(4- HETSYN 2 1FA TRIFLUOROMETHYL-PHENYLETHYNYL) -PYRIDIN-4-YLSULFANYL]- HETSYN 3 1FA INDAN-4-YLOXY}-ACETIC ACID FORMUL 3 1FA 2(C32 H27 F3 N2 O4 S) HELIX 1 1 ASP A 210 LYS A 224 1 15 HELIX 2 2 THR A 229 THR A 238 1 10 HELIX 3 3 ASP A 251 GLY A 261 1 11 HELIX 4 4 ILE A 277 SER A 302 1 26 HELIX 5 5 ILE A 303 SER A 308 1 6 HELIX 6 6 PHE A 310 VAL A 334 1 25 HELIX 7 7 ARG A 350 SER A 355 1 6 HELIX 8 8 PHE A 360 LEU A 377 1 18 HELIX 9 9 ASP A 380 LEU A 393 1 14 HELIX 10 10 ASN A 402 HIS A 425 1 24 HELIX 11 11 TYR A 430 ARG A 455 1 26 HELIX 12 12 ALA B 209 PHE B 226 1 18 HELIX 13 13 THR B 229 GLY B 239 1 11 HELIX 14 14 ASP B 251 LYS B 260 1 10 HELIX 15 15 GLU B 276 GLN B 286 1 11 HELIX 16 16 THR B 288 SER B 302 1 15 HELIX 17 17 PHE B 310 TYR B 320 1 11 HELIX 18 18 GLY B 321 LEU B 330 1 10 HELIX 19 19 ARG B 350 SER B 355 1 6 HELIX 20 20 PRO B 359 LEU B 377 1 19 HELIX 21 21 ASP B 380 LEU B 393 1 14 HELIX 22 22 ASN B 402 HIS B 425 1 24 HELIX 23 23 TYR B 430 LYS B 457 1 28 SHEET 1 A 3 PHE A 247 ILE A 249 0 SHEET 2 A 3 GLY A 346 THR A 349 1 O PHE A 347 N PHE A 247 SHEET 3 A 3 GLY A 338 VAL A 341 -1 N VAL A 341 O GLY A 346 SHEET 1 B 4 PHE B 247 ILE B 249 0 SHEET 2 B 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 B 4 GLY B 338 VAL B 341 -1 N LEU B 339 O VAL B 348 SHEET 4 B 4 VAL B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 CISPEP 1 LYS A 358 PRO A 359 0 -6.45 CISPEP 2 LYS B 358 PRO B 359 0 15.72 SITE 1 AC1 16 MET A 228 LEU A 255 ARG A 284 CYS A 285 SITE 2 AC1 16 GLN A 286 THR A 288 THR A 292 ILE A 326 SITE 3 AC1 16 PHE A 327 MET A 329 LEU A 330 ILE A 333 SITE 4 AC1 16 ILE A 363 LYS A 367 HIS A 449 MET A 453 SITE 1 AC2 16 MET B 228 LEU B 255 PHE B 282 ARG B 284 SITE 2 AC2 16 CYS B 285 GLN B 286 THR B 288 THR B 292 SITE 3 AC2 16 MET B 329 LEU B 330 ILE B 333 LEU B 339 SITE 4 AC2 16 ILE B 363 ILE B 364 LYS B 367 HIS B 449 CRYST1 112.577 65.603 101.149 90.00 124.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008883 0.000000 0.006003 0.00000 SCALE2 0.000000 0.015243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011932 0.00000