HEADER HYDROLASE 04-JUN-07 2Q63 TITLE HIV-1 PR MUTANT IN COMPLEX WITH NELFINAVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE RETROPEPSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HIV-1 PROTEASE; COMPND 5 EC: 3.4.23.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: TYPE B; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET LIKE, T7 PROMOTOR DRIVEN KEYWDS RESISTANCE; NELFINAVIR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.REZACOVA,M.KOZISEK,K.SASKOVA,J.BRYNDA,J.KONVALINKA REVDAT 7 30-AUG-23 2Q63 1 REMARK REVDAT 6 20-OCT-21 2Q63 1 REMARK SEQADV REVDAT 5 13-JUL-11 2Q63 1 VERSN REVDAT 4 24-FEB-09 2Q63 1 VERSN REVDAT 3 25-MAR-08 2Q63 1 REMARK REVDAT 2 04-MAR-08 2Q63 1 REMARK REVDAT 1 26-FEB-08 2Q63 0 JRNL AUTH M.KOZISEK,J.BRAY,P.REZACOVA,K.SASKOVA,J.BRYNDA,J.POKORNA, JRNL AUTH 2 F.MAMMANO,L.RULISEK,J.KONVALINKA JRNL TITL MOLECULAR ANALYSIS OF THE HIV-1 RESISTANCE DEVELOPMENT: JRNL TITL 2 ENZYMATIC ACTIVITIES, CRYSTAL STRUCTURES, AND THERMODYNAMICS JRNL TITL 3 OF NELFINAVIR-RESISTANT HIV PROTEASE MUTANTS JRNL REF J.MOL.BIOL. V. 374 1005 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17977555 JRNL DOI 10.1016/J.JMB.2007.09.083 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 8003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 881 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 454 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.532 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.650 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1641 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2231 ; 1.320 ; 2.032 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 6.406 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;39.869 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 282 ;14.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.312 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 265 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1166 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 758 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1109 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1015 ; 0.499 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1592 ; 0.741 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 720 ; 1.255 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 638 ; 1.843 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 99 2 REMARK 3 1 B 1 B 99 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 395 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 359 ; 0.07 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 395 ; 0.08 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 359 ; 0.09 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1001 A 1001 1 REMARK 3 1 A 1001 A 1001 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 B (A): 40 ; 0.01 ; 0.05 REMARK 3 TIGHT THERMAL 2 B (A**2): 40 ; 0.04 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 6 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0080 60.0550 9.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1461 REMARK 3 T33: 0.0669 T12: -0.1825 REMARK 3 T13: -0.0829 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 2.1031 L22: 4.8829 REMARK 3 L33: 34.9925 L12: 3.0982 REMARK 3 L13: -1.7093 L23: 0.7552 REMARK 3 S TENSOR REMARK 3 S11: 0.8684 S12: -0.2168 S13: -0.6088 REMARK 3 S21: -0.0441 S22: -0.5868 S23: -0.4522 REMARK 3 S31: -2.0511 S32: 2.9418 S33: -0.2816 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4260 65.7740 -0.5160 REMARK 3 T TENSOR REMARK 3 T11: -0.0647 T22: -0.1338 REMARK 3 T33: -0.1027 T12: -0.0140 REMARK 3 T13: -0.0073 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.8939 L22: 8.3914 REMARK 3 L33: 6.3566 L12: -1.0439 REMARK 3 L13: 1.3448 L23: -6.8246 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.0222 S13: 0.2471 REMARK 3 S21: 0.2386 S22: 0.0043 S23: 0.0220 REMARK 3 S31: -0.3380 S32: -0.0601 S33: 0.0128 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8530 60.9190 -5.5510 REMARK 3 T TENSOR REMARK 3 T11: -0.0768 T22: -0.0950 REMARK 3 T33: 0.0049 T12: -0.0487 REMARK 3 T13: -0.0370 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 13.1091 L22: 31.1602 REMARK 3 L33: 6.4946 L12: -10.5808 REMARK 3 L13: 3.9984 L23: -10.8480 REMARK 3 S TENSOR REMARK 3 S11: 0.3368 S12: 0.2202 S13: 0.7574 REMARK 3 S21: -0.9101 S22: 0.0316 S23: 0.9733 REMARK 3 S31: 0.3492 S32: -0.4917 S33: -0.3684 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8500 59.5660 -14.1230 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.2082 REMARK 3 T33: 0.2383 T12: -0.0912 REMARK 3 T13: -0.0361 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 18.8158 L22: 2.9771 REMARK 3 L33: 36.2432 L12: 7.0716 REMARK 3 L13: 15.6811 L23: 4.6893 REMARK 3 S TENSOR REMARK 3 S11: -0.4394 S12: 2.0650 S13: -0.2137 REMARK 3 S21: -3.4985 S22: 1.3570 S23: 0.9785 REMARK 3 S31: 2.0028 S32: -1.0363 S33: -0.9175 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5930 53.0080 -0.2900 REMARK 3 T TENSOR REMARK 3 T11: 0.4506 T22: 0.3942 REMARK 3 T33: 0.3693 T12: 0.1310 REMARK 3 T13: -0.1284 T23: 0.1034 REMARK 3 L TENSOR REMARK 3 L11: 8.2743 L22: 5.8838 REMARK 3 L33: 0.2454 L12: 6.9774 REMARK 3 L13: 1.4251 L23: 1.2017 REMARK 3 S TENSOR REMARK 3 S11: -1.4013 S12: 0.0233 S13: 0.6280 REMARK 3 S21: 0.5235 S22: 0.9681 S23: 1.1734 REMARK 3 S31: -0.9824 S32: 2.5320 S33: 0.4332 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1820 62.6290 -11.6920 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: -0.1263 REMARK 3 T33: -0.0532 T12: 0.0723 REMARK 3 T13: 0.0845 T23: 0.0960 REMARK 3 L TENSOR REMARK 3 L11: 28.0818 L22: 10.1811 REMARK 3 L33: 4.2214 L12: 7.1160 REMARK 3 L13: -0.7765 L23: -0.0257 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.1476 S13: -0.1987 REMARK 3 S21: -0.7818 S22: -0.0575 S23: -0.4309 REMARK 3 S31: 0.4500 S32: -0.1026 S33: 0.0553 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4450 60.1360 -6.1180 REMARK 3 T TENSOR REMARK 3 T11: -0.0230 T22: -0.0967 REMARK 3 T33: -0.0442 T12: -0.0035 REMARK 3 T13: -0.0047 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.9664 L22: 5.1659 REMARK 3 L33: 4.4283 L12: 0.1133 REMARK 3 L13: 0.8010 L23: -3.0063 REMARK 3 S TENSOR REMARK 3 S11: -0.1114 S12: 0.0788 S13: 0.1693 REMARK 3 S21: -0.3796 S22: 0.2585 S23: 0.2456 REMARK 3 S31: 0.0230 S32: -0.1172 S33: -0.1472 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3280 56.7460 -7.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.0970 T22: -0.0139 REMARK 3 T33: -0.0693 T12: 0.0734 REMARK 3 T13: 0.0757 T23: 0.0659 REMARK 3 L TENSOR REMARK 3 L11: 29.5767 L22: 53.5434 REMARK 3 L33: 18.6699 L12: -8.3815 REMARK 3 L13: -21.6789 L23: -5.7830 REMARK 3 S TENSOR REMARK 3 S11: 0.3327 S12: 0.4618 S13: 1.1680 REMARK 3 S21: -1.9015 S22: -0.0432 S23: -0.6835 REMARK 3 S31: 0.0800 S32: 1.0070 S33: -0.2895 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3410 51.8240 3.3920 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0226 REMARK 3 T33: 0.1773 T12: -0.0373 REMARK 3 T13: 0.0521 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 9.0963 L22: 4.0161 REMARK 3 L33: 22.6548 L12: 2.2892 REMARK 3 L13: -2.9991 L23: -1.0110 REMARK 3 S TENSOR REMARK 3 S11: -0.2543 S12: 0.1237 S13: 0.1778 REMARK 3 S21: 0.2026 S22: -0.9464 S23: -0.9157 REMARK 3 S31: 0.8807 S32: 0.5064 S33: 1.2007 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 6 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0050 48.2170 -1.3390 REMARK 3 T TENSOR REMARK 3 T11: 0.1380 T22: 0.1624 REMARK 3 T33: 0.1132 T12: 0.1308 REMARK 3 T13: 0.1058 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 5.6675 L22: 5.4243 REMARK 3 L33: 31.0666 L12: 1.4587 REMARK 3 L13: 5.6884 L23: 3.4260 REMARK 3 S TENSOR REMARK 3 S11: 1.2590 S12: 0.1676 S13: 0.5187 REMARK 3 S21: -0.6331 S22: -0.3236 S23: -0.9397 REMARK 3 S31: 1.7197 S32: 2.8510 S33: -0.9355 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 14 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6440 42.1920 5.5360 REMARK 3 T TENSOR REMARK 3 T11: -0.0423 T22: -0.1300 REMARK 3 T33: -0.0932 T12: 0.0101 REMARK 3 T13: -0.0171 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 2.8128 L22: 9.1453 REMARK 3 L33: 22.2765 L12: 1.2773 REMARK 3 L13: -6.5332 L23: -10.1120 REMARK 3 S TENSOR REMARK 3 S11: -0.0799 S12: -0.0919 S13: -0.0515 REMARK 3 S21: -0.4694 S22: -0.4419 S23: -0.2600 REMARK 3 S31: 0.3864 S32: 0.4494 S33: 0.5218 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 23 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4720 38.5090 12.6010 REMARK 3 T TENSOR REMARK 3 T11: -0.1529 T22: -0.1106 REMARK 3 T33: -0.0389 T12: -0.0109 REMARK 3 T13: 0.0555 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.5266 L22: 30.3031 REMARK 3 L33: 17.7253 L12: -0.7585 REMARK 3 L13: 3.9184 L23: -17.0948 REMARK 3 S TENSOR REMARK 3 S11: 0.2411 S12: -0.1129 S13: -0.0077 REMARK 3 S21: -0.4911 S22: 0.2200 S23: 0.0161 REMARK 3 S31: 0.7280 S32: -0.4415 S33: -0.4611 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 36 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7120 48.8680 11.4240 REMARK 3 T TENSOR REMARK 3 T11: -0.0559 T22: -0.1514 REMARK 3 T33: -0.0424 T12: 0.0232 REMARK 3 T13: 0.0067 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 7.4168 L22: 5.4040 REMARK 3 L33: 5.8736 L12: 0.1249 REMARK 3 L13: -3.1483 L23: -3.9509 REMARK 3 S TENSOR REMARK 3 S11: 0.1459 S12: 0.1847 S13: -0.4776 REMARK 3 S21: 0.3082 S22: -0.0061 S23: 0.6160 REMARK 3 S31: -0.0603 S32: -0.3069 S33: -0.1398 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9380 49.7000 20.0960 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.3470 REMARK 3 T33: 0.1659 T12: 0.0656 REMARK 3 T13: 0.1242 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 7.0267 L22: 22.2654 REMARK 3 L33: 30.6535 L12: -2.6908 REMARK 3 L13: 0.3535 L23: -10.0186 REMARK 3 S TENSOR REMARK 3 S11: -0.4125 S12: -1.1297 S13: -0.2929 REMARK 3 S21: 3.4021 S22: 0.8892 S23: 0.8258 REMARK 3 S31: -2.7394 S32: -1.1876 S33: -0.4767 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2620 49.6250 18.0030 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.0735 REMARK 3 T33: 0.0302 T12: 0.0461 REMARK 3 T13: 0.1030 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 8.8896 L22: 8.7171 REMARK 3 L33: 1.5536 L12: -3.8803 REMARK 3 L13: 2.1778 L23: -3.6272 REMARK 3 S TENSOR REMARK 3 S11: 0.2715 S12: -0.3715 S13: 0.1092 REMARK 3 S21: 0.7085 S22: -0.0214 S23: 0.6195 REMARK 3 S31: -0.2601 S32: -0.4837 S33: -0.2501 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 65 B 80 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8930 45.4660 16.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: -0.2002 REMARK 3 T33: 0.0284 T12: -0.0877 REMARK 3 T13: 0.0262 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 8.1279 L22: 5.8664 REMARK 3 L33: 10.6610 L12: -3.4510 REMARK 3 L13: 4.3257 L23: -4.7613 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: -0.3872 S13: -0.6434 REMARK 3 S21: 0.2131 S22: 0.2276 S23: -0.2136 REMARK 3 S31: -0.3572 S32: 0.1649 S33: -0.1698 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 81 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6480 50.1920 11.3050 REMARK 3 T TENSOR REMARK 3 T11: -0.0518 T22: -0.0980 REMARK 3 T33: -0.0877 T12: -0.0445 REMARK 3 T13: -0.0554 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.4500 L22: 6.4949 REMARK 3 L33: 5.3782 L12: -0.1383 REMARK 3 L13: -1.5323 L23: 1.4881 REMARK 3 S TENSOR REMARK 3 S11: -0.2056 S12: 0.0879 S13: -0.0295 REMARK 3 S21: 0.2521 S22: 0.0561 S23: 0.2882 REMARK 3 S31: -0.1117 S32: -0.0033 S33: 0.1494 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4740 54.6840 7.9980 REMARK 3 T TENSOR REMARK 3 T11: -0.0473 T22: 0.1303 REMARK 3 T33: 0.1022 T12: 0.0472 REMARK 3 T13: -0.0904 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.3652 L22: 10.6847 REMARK 3 L33: 16.5974 L12: 1.5057 REMARK 3 L13: -5.4722 L23: -4.6932 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: -0.0533 S13: -0.1695 REMARK 3 S21: -0.3162 S22: -0.5119 S23: -0.8972 REMARK 3 S31: 0.2182 S32: 0.7030 S33: 0.5888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Q63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : DOUBLE MIRRORS X-RAY OPTICAL REMARK 200 SYSTEM (BRUKER) REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 54.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1U8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION: 0.5M (NH4)2SO4, REMARK 280 0.1M MES PH 5.4 OR PH 5.5; DROPS: 2+1UL (PROTEIN+RESERVOIR}; REMARK 280 PROTEIN: 3-5MG/ML 5-FOLD MOLAR EXCESS OF INHIBITOR, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.70667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.03000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.38333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.67667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 34 O HOH B 107 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1UN A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PYM RELATED DB: PDB REMARK 900 RELATED ID: 2PYN RELATED DB: PDB REMARK 900 RELATED ID: 2Q64 RELATED DB: PDB REMARK 900 RELATED ID: 2QAK RELATED DB: PDB DBREF 2Q63 A 1 99 UNP P03367 POL_HV1BR 69 167 DBREF 2Q63 B 1 99 UNP P03367 POL_HV1BR 69 167 SEQADV 2Q63 ASN A 30 UNP P03367 ASP 98 ENGINEERED MUTATION SEQADV 2Q63 ALA A 55 UNP P03367 LYS 123 ENGINEERED MUTATION SEQADV 2Q63 MET A 90 UNP P03367 LEU 158 ENGINEERED MUTATION SEQADV 2Q63 ASN B 30 UNP P03367 ASP 98 ENGINEERED MUTATION SEQADV 2Q63 ALA B 55 UNP P03367 LYS 123 ENGINEERED MUTATION SEQADV 2Q63 MET B 90 UNP P03367 LEU 158 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP GLN ARG PRO LEU VAL THR ILE SEQRES 2 A 99 LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASN THR VAL LEU GLU GLU MET SER LEU PRO SEQRES 4 A 99 GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE ILE ALA VAL ARG GLN TYR ASP GLN ILE LEU ILE GLU SEQRES 6 A 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU MET THR SEQRES 8 A 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP GLN ARG PRO LEU VAL THR ILE SEQRES 2 B 99 LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASN THR VAL LEU GLU GLU MET SER LEU PRO SEQRES 4 B 99 GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE ILE ALA VAL ARG GLN TYR ASP GLN ILE LEU ILE GLU SEQRES 6 B 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU MET THR SEQRES 8 B 99 GLN ILE GLY CYS THR LEU ASN PHE HET 1UN A1001 80 HETNAM 1UN 2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4- HETNAM 2 1UN PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3- HETNAM 3 1UN CARBOXYLIC ACID TERT-BUTYLAMIDE HETSYN 1UN NELFINAVIR MESYLATE AG1343 FORMUL 3 1UN C32 H45 N3 O4 S FORMUL 4 HOH *118(H2 O) HELIX 1 1 GLY A 86 THR A 91 1 6 HELIX 2 2 GLN A 92 GLY A 94 5 3 HELIX 3 3 GLY B 86 THR B 91 1 6 HELIX 4 4 GLN B 92 GLY B 94 5 3 SHEET 1 A 4 GLN A 2 ILE A 3 0 SHEET 2 A 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 A 4 THR A 96 ASN A 98 -1 N THR A 96 O ASN B 98 SHEET 4 A 4 GLN B 2 ILE B 3 -1 O ILE B 3 N LEU A 97 SHEET 1 B 8 LYS A 43 GLY A 49 0 SHEET 2 B 8 GLY A 52 ILE A 66 -1 O VAL A 56 N LYS A 45 SHEET 3 B 8 HIS A 69 VAL A 77 -1 O ALA A 71 N ILE A 64 SHEET 4 B 8 VAL A 32 LEU A 33 1 N LEU A 33 O LEU A 76 SHEET 5 B 8 ILE A 84 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 B 8 LEU A 10 ILE A 15 -1 N ILE A 13 O LYS A 20 SHEET 8 B 8 GLY A 52 ILE A 66 -1 O GLU A 65 N LYS A 14 SHEET 1 C 8 LYS B 43 GLY B 49 0 SHEET 2 C 8 GLY B 52 ILE B 66 -1 O VAL B 56 N LYS B 45 SHEET 3 C 8 HIS B 69 VAL B 77 -1 O ALA B 71 N ILE B 64 SHEET 4 C 8 VAL B 32 LEU B 33 1 N LEU B 33 O LEU B 76 SHEET 5 C 8 ILE B 84 ILE B 85 -1 O ILE B 84 N VAL B 32 SHEET 6 C 8 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 85 SHEET 7 C 8 LEU B 10 ILE B 15 -1 N ILE B 13 O LYS B 20 SHEET 8 C 8 GLY B 52 ILE B 66 -1 O GLU B 65 N LYS B 14 CISPEP 1 PRO B 39 GLY B 40 0 -23.86 SITE 1 AC1 24 ASP A 25 GLY A 27 ASP A 29 ASN A 30 SITE 2 AC1 24 ILE A 47 GLY A 48 GLY A 49 ILE A 50 SITE 3 AC1 24 THR A 80 PRO A 81 ILE A 84 HOH A1006 SITE 4 AC1 24 HOH A1052 ASP B 25 GLY B 27 ASP B 29 SITE 5 AC1 24 ASN B 30 ILE B 47 GLY B 48 GLY B 49 SITE 6 AC1 24 ILE B 50 PRO B 81 ILE B 84 HOH B 151 CRYST1 62.500 62.500 82.060 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016000 0.009238 0.000000 0.00000 SCALE2 0.000000 0.018475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012186 0.00000