data_2Q9K # _entry.id 2Q9K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Q9K pdb_00002q9k 10.2210/pdb2q9k/pdb RCSB RCSB043320 ? ? WWPDB D_1000043320 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 375036 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2Q9K _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-06-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of conserved uncharacterized protein (ZP_00539648.1) from Exiguobacterium sp. 255-15 at 1.59 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2Q9K _cell.length_a 56.314 _cell.length_b 56.314 _cell.length_c 95.205 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Q9K _symmetry.Int_Tables_number 152 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 17282.236 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 3 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)ANKVEHRLSEQQ(MSE)KALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAIEADSLLVKTLADHPVF TLIFFADQSTYSLTCTDVAAWETTARLPLKVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDEAAA(MSE)QLDQQIQDI LKG ; _entity_poly.pdbx_seq_one_letter_code_can ;GMANKVEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQ STYSLTCTDVAAWETTARLPLKVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDEAAAMQLDQQIQDILKG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 375036 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ALA n 1 4 ASN n 1 5 LYS n 1 6 VAL n 1 7 GLU n 1 8 HIS n 1 9 ARG n 1 10 LEU n 1 11 SER n 1 12 GLU n 1 13 GLN n 1 14 GLN n 1 15 MSE n 1 16 LYS n 1 17 ALA n 1 18 LEU n 1 19 THR n 1 20 ASP n 1 21 LEU n 1 22 PRO n 1 23 LEU n 1 24 VAL n 1 25 PHE n 1 26 LEU n 1 27 ILE n 1 28 THR n 1 29 HIS n 1 30 ASP n 1 31 GLN n 1 32 SER n 1 33 LYS n 1 34 SER n 1 35 TRP n 1 36 PRO n 1 37 ILE n 1 38 THR n 1 39 HIS n 1 40 ALA n 1 41 ILE n 1 42 SER n 1 43 TRP n 1 44 VAL n 1 45 TYR n 1 46 ALA n 1 47 LYS n 1 48 ASP n 1 49 GLU n 1 50 THR n 1 51 THR n 1 52 ILE n 1 53 ARG n 1 54 PHE n 1 55 ALA n 1 56 ILE n 1 57 GLU n 1 58 ALA n 1 59 ASP n 1 60 SER n 1 61 LEU n 1 62 LEU n 1 63 VAL n 1 64 LYS n 1 65 THR n 1 66 LEU n 1 67 ALA n 1 68 ASP n 1 69 HIS n 1 70 PRO n 1 71 VAL n 1 72 PHE n 1 73 THR n 1 74 LEU n 1 75 ILE n 1 76 PHE n 1 77 PHE n 1 78 ALA n 1 79 ASP n 1 80 GLN n 1 81 SER n 1 82 THR n 1 83 TYR n 1 84 SER n 1 85 LEU n 1 86 THR n 1 87 CYS n 1 88 THR n 1 89 ASP n 1 90 VAL n 1 91 ALA n 1 92 ALA n 1 93 TRP n 1 94 GLU n 1 95 THR n 1 96 THR n 1 97 ALA n 1 98 ARG n 1 99 LEU n 1 100 PRO n 1 101 LEU n 1 102 LYS n 1 103 VAL n 1 104 ALA n 1 105 LEU n 1 106 TYR n 1 107 GLU n 1 108 GLY n 1 109 GLN n 1 110 ILE n 1 111 LYS n 1 112 GLU n 1 113 VAL n 1 114 ARG n 1 115 ASP n 1 116 ILE n 1 117 LEU n 1 118 PHE n 1 119 TYR n 1 120 GLY n 1 121 ALA n 1 122 ALA n 1 123 VAL n 1 124 SER n 1 125 ASP n 1 126 ARG n 1 127 PRO n 1 128 ARG n 1 129 VAL n 1 130 TYR n 1 131 LYS n 1 132 THR n 1 133 TYR n 1 134 ASP n 1 135 GLU n 1 136 ALA n 1 137 ALA n 1 138 ALA n 1 139 MSE n 1 140 GLN n 1 141 LEU n 1 142 ASP n 1 143 GLN n 1 144 GLN n 1 145 ILE n 1 146 GLN n 1 147 ASP n 1 148 ILE n 1 149 LEU n 1 150 LYS n 1 151 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Exiguobacterium _entity_src_gen.pdbx_gene_src_gene 'ZP_00539648.1, ExigDRAFT_1246' _entity_src_gen.gene_src_species 'Exiguobacterium sibiricum' _entity_src_gen.gene_src_strain 255-15 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Exiguobacterium sibiricum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 262543 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q41CU9_9BACI _struct_ref.pdbx_db_accession Q41CU9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MANKVEHRLSEQQMKALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQS TYSLTCTDVAAWETTARLPLKVALYEGQIKEVRDILFYGAAVSDRPRVYKTYDEAAAMQLDQQIQDILKG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Q9K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 151 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q41CU9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 150 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 150 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Q9K GLY A 1 ? UNP Q41CU9 ? ? 'expression tag' 0 1 1 2Q9K MSE A 2 ? UNP Q41CU9 MET 1 'modified residue' 1 2 1 2Q9K MSE A 15 ? UNP Q41CU9 MET 14 'modified residue' 14 3 1 2Q9K MSE A 139 ? UNP Q41CU9 MET 138 'modified residue' 138 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2Q9K # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 0.17M Sodium acetate, 25.5% PEG 4000, 15.0% Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2007-06-03 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97908 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list '0.91162, 0.97908' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 2Q9K _reflns.d_resolution_high 1.59 _reflns.d_resolution_low 26.997 _reflns.number_obs 24172 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_netI_over_sigmaI 5.900 _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_redundancy 7.100 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 24.182 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.59 1.63 ? 11754 ? 0.832 0.9 0.832 ? 6.70 ? 1753 100.00 1 1 1.63 1.68 ? 12547 ? 0.661 1.2 0.661 ? 7.30 ? 1729 99.90 2 1 1.68 1.72 ? 12001 ? 0.512 1.5 0.512 ? 7.20 ? 1664 100.00 3 1 1.72 1.78 ? 11747 ? 0.400 1.9 0.400 ? 7.30 ? 1619 100.00 4 1 1.78 1.84 ? 11209 ? 0.296 2.6 0.296 ? 7.20 ? 1549 100.00 5 1 1.84 1.90 ? 11037 ? 0.214 3.5 0.214 ? 7.20 ? 1525 100.00 6 1 1.90 1.97 ? 10736 ? 0.171 4.3 0.171 ? 7.30 ? 1479 100.00 7 1 1.97 2.05 ? 10244 ? 0.133 5.4 0.133 ? 7.20 ? 1414 100.00 8 1 2.05 2.14 ? 9854 ? 0.113 6.2 0.113 ? 7.20 ? 1361 100.00 9 1 2.14 2.25 ? 9469 ? 0.098 7.1 0.098 ? 7.20 ? 1312 100.00 10 1 2.25 2.37 ? 9034 ? 0.084 8.0 0.084 ? 7.20 ? 1251 100.00 11 1 2.37 2.51 ? 8603 ? 0.077 8.4 0.077 ? 7.20 ? 1188 100.00 12 1 2.51 2.69 ? 8037 ? 0.075 8.5 0.075 ? 7.20 ? 1120 100.00 13 1 2.69 2.90 ? 7450 ? 0.069 9.3 0.069 ? 7.10 ? 1045 100.00 14 1 2.90 3.18 ? 6834 ? 0.060 10.2 0.060 ? 7.10 ? 960 100.00 15 1 3.18 3.56 ? 6187 ? 0.052 11.8 0.052 ? 7.00 ? 882 100.00 16 1 3.56 4.11 ? 5501 ? 0.053 11.4 0.053 ? 7.00 ? 789 100.00 17 1 4.11 5.03 ? 4582 ? 0.047 13.3 0.047 ? 6.80 ? 673 100.00 18 1 5.03 7.11 ? 3582 ? 0.043 13.7 0.043 ? 6.60 ? 543 100.00 19 1 7.11 26.997 ? 1869 ? 0.039 15.0 0.039 ? 5.90 ? 316 97.80 20 1 # _refine.entry_id 2Q9K _refine.ls_d_res_high 1.590 _refine.ls_d_res_low 26.997 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.960 _refine.ls_number_reflns_obs 24135 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 4. UNKNOWN LIGAND (UNL) WAS MODELED BASED ON RELATED STRUCTURES. ; _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.252 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1232 _refine.B_iso_mean 19.654 _refine.aniso_B[1][1] 0.270 _refine.aniso_B[2][2] 0.270 _refine.aniso_B[3][3] -0.400 _refine.aniso_B[1][2] 0.130 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.pdbx_overall_ESU_R 0.091 _refine.pdbx_overall_ESU_R_Free 0.099 _refine.overall_SU_ML 0.065 _refine.overall_SU_B 3.750 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1160 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 1278 _refine_hist.d_res_high 1.590 _refine_hist.d_res_low 26.997 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1268 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 827 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1750 1.654 1.960 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2052 0.961 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 171 6.149 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 57 31.651 25.088 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 223 15.594 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 20.551 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 210 0.111 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1421 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 249 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 233 0.245 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 827 0.204 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 620 0.185 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 703 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 87 0.172 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 15 0.258 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 54 0.272 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 8 0.112 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 838 1.294 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 304 0.315 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1276 1.836 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 543 2.546 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 461 3.598 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.590 _refine_ls_shell.d_res_low 1.631 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.940 _refine_ls_shell.number_reflns_R_work 1669 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.296 _refine_ls_shell.R_factor_R_free 0.311 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 76 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1745 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Q9K _struct.title 'Crystal structure of a putative oxidoreductase (exig_1997) from exiguobacterium sibiricum 255-15 at 1.59 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Split barrel-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, oxidoreductase ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 2Q9K # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 11 ? LEU A 18 ? SER A 10 LEU A 17 1 ? 8 HELX_P HELX_P2 2 LEU A 61 ? HIS A 69 ? LEU A 60 HIS A 68 1 ? 9 HELX_P HELX_P3 3 ASP A 134 ? GLY A 151 ? ASP A 133 GLY A 150 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLN 14 C ? ? ? 1_555 A MSE 15 N ? ? A GLN 13 A MSE 14 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale2 covale both ? A MSE 15 C ? ? ? 1_555 A LYS 16 N ? ? A MSE 14 A LYS 15 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale3 covale both ? A ALA 138 C ? ? ? 1_555 A MSE 139 N ? ? A ALA 137 A MSE 138 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale4 covale both ? A MSE 139 C ? ? ? 1_555 A GLN 140 N ? ? A MSE 138 A GLN 139 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 37 ? ILE A 41 ? ILE A 36 ILE A 40 A 2 VAL A 24 ? THR A 28 ? VAL A 23 THR A 27 A 3 PHE A 72 ? ALA A 78 ? PHE A 71 ALA A 77 A 4 SER A 81 ? TRP A 93 ? SER A 80 TRP A 92 A 5 VAL A 103 ? ASP A 115 ? VAL A 102 ASP A 114 A 6 THR A 51 ? GLU A 57 ? THR A 50 GLU A 56 A 7 VAL A 44 ? ASP A 48 ? VAL A 43 ASP A 47 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 39 ? O HIS A 38 N LEU A 26 ? N LEU A 25 A 2 3 N ILE A 27 ? N ILE A 26 O THR A 73 ? O THR A 72 A 3 4 N ALA A 78 ? N ALA A 77 O SER A 81 ? O SER A 80 A 4 5 N THR A 86 ? N THR A 85 O LYS A 111 ? O LYS A 110 A 5 6 O ALA A 104 ? O ALA A 103 N ILE A 56 ? N ILE A 55 A 6 7 O ARG A 53 ? O ARG A 52 N TYR A 45 ? N TYR A 44 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id UNL _struct_site.pdbx_auth_seq_id 151 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE UNL A 151' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ILE A 41 ? ILE A 40 . ? 1_555 ? 2 AC1 10 SER A 42 ? SER A 41 . ? 1_555 ? 3 AC1 10 TRP A 43 ? TRP A 42 . ? 1_555 ? 4 AC1 10 ALA A 55 ? ALA A 54 . ? 1_555 ? 5 AC1 10 ILE A 56 ? ILE A 55 . ? 1_555 ? 6 AC1 10 GLU A 57 ? GLU A 56 . ? 1_555 ? 7 AC1 10 PHE A 118 ? PHE A 117 . ? 4_555 ? 8 AC1 10 LYS A 131 ? LYS A 130 . ? 1_555 ? 9 AC1 10 ASP A 142 ? ASP A 141 . ? 1_555 ? 10 AC1 10 HOH C . ? HOH A 174 . ? 1_555 ? # _atom_sites.entry_id 2Q9K _atom_sites.fract_transf_matrix[1][1] 0.017758 _atom_sites.fract_transf_matrix[1][2] 0.010252 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020505 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010504 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ALA 3 2 ? ? ? A . n A 1 4 ASN 4 3 ? ? ? A . n A 1 5 LYS 5 4 4 LYS LYS A . n A 1 6 VAL 6 5 5 VAL VAL A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 HIS 8 7 7 HIS HIS A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 SER 11 10 10 SER SER A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 GLN 14 13 13 GLN GLN A . n A 1 15 MSE 15 14 14 MSE MSE A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 ASP 20 19 19 ASP ASP A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 PRO 22 21 21 PRO PRO A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 HIS 29 28 28 HIS HIS A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 GLN 31 30 30 GLN GLN A . n A 1 32 SER 32 31 31 SER SER A . n A 1 33 LYS 33 32 32 LYS LYS A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 TRP 35 34 34 TRP TRP A . n A 1 36 PRO 36 35 35 PRO PRO A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 THR 38 37 37 THR THR A . n A 1 39 HIS 39 38 38 HIS HIS A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 TRP 43 42 42 TRP TRP A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 TYR 45 44 44 TYR TYR A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 LYS 47 46 46 LYS LYS A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 ILE 52 51 51 ILE ILE A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 PHE 54 53 53 PHE PHE A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 GLU 57 56 56 GLU GLU A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 LYS 64 63 63 LYS LYS A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 HIS 69 68 68 HIS HIS A . n A 1 70 PRO 70 69 69 PRO PRO A . n A 1 71 VAL 71 70 70 VAL VAL A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 THR 73 72 72 THR THR A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 ILE 75 74 74 ILE ILE A . n A 1 76 PHE 76 75 75 PHE PHE A . n A 1 77 PHE 77 76 76 PHE PHE A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 GLN 80 79 79 GLN GLN A . n A 1 81 SER 81 80 80 SER SER A . n A 1 82 THR 82 81 81 THR THR A . n A 1 83 TYR 83 82 82 TYR TYR A . n A 1 84 SER 84 83 83 SER SER A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 THR 86 85 85 THR THR A . n A 1 87 CYS 87 86 86 CYS CYS A . n A 1 88 THR 88 87 87 THR THR A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 TRP 93 92 92 TRP TRP A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 THR 95 94 94 THR THR A . n A 1 96 THR 96 95 95 THR THR A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 LEU 99 98 98 LEU LEU A . n A 1 100 PRO 100 99 99 PRO PRO A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 LYS 102 101 101 LYS LYS A . n A 1 103 VAL 103 102 102 VAL VAL A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 GLU 107 106 106 GLU GLU A . n A 1 108 GLY 108 107 107 GLY GLY A . n A 1 109 GLN 109 108 108 GLN GLN A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 LYS 111 110 110 LYS LYS A . n A 1 112 GLU 112 111 111 GLU GLU A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 ASP 115 114 114 ASP ASP A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 PHE 118 117 117 PHE PHE A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 VAL 123 122 122 VAL VAL A . n A 1 124 SER 124 123 123 SER SER A . n A 1 125 ASP 125 124 124 ASP ASP A . n A 1 126 ARG 126 125 125 ARG ARG A . n A 1 127 PRO 127 126 126 PRO PRO A . n A 1 128 ARG 128 127 127 ARG ARG A . n A 1 129 VAL 129 128 128 VAL VAL A . n A 1 130 TYR 130 129 129 TYR TYR A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 THR 132 131 131 THR THR A . n A 1 133 TYR 133 132 132 TYR TYR A . n A 1 134 ASP 134 133 133 ASP ASP A . n A 1 135 GLU 135 134 134 GLU GLU A . n A 1 136 ALA 136 135 135 ALA ALA A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 ALA 138 137 137 ALA ALA A . n A 1 139 MSE 139 138 138 MSE MSE A . n A 1 140 GLN 140 139 139 GLN GLN A . n A 1 141 LEU 141 140 140 LEU LEU A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 GLN 143 142 142 GLN GLN A . n A 1 144 GLN 144 143 143 GLN GLN A . n A 1 145 ILE 145 144 144 ILE ILE A . n A 1 146 GLN 146 145 145 GLN GLN A . n A 1 147 ASP 147 146 146 ASP ASP A . n A 1 148 ILE 148 147 147 ILE ILE A . n A 1 149 LEU 149 148 148 LEU LEU A . n A 1 150 LYS 150 149 149 LYS LYS A . n A 1 151 GLY 151 150 150 GLY GLY A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL 1 151 1 UNL UNL A . C 3 HOH 1 152 2 HOH HOH A . C 3 HOH 2 153 3 HOH HOH A . C 3 HOH 3 154 4 HOH HOH A . C 3 HOH 4 155 5 HOH HOH A . C 3 HOH 5 156 6 HOH HOH A . C 3 HOH 6 157 7 HOH HOH A . C 3 HOH 7 158 8 HOH HOH A . C 3 HOH 8 159 9 HOH HOH A . C 3 HOH 9 160 10 HOH HOH A . C 3 HOH 10 161 11 HOH HOH A . C 3 HOH 11 162 12 HOH HOH A . C 3 HOH 12 163 13 HOH HOH A . C 3 HOH 13 164 14 HOH HOH A . C 3 HOH 14 165 15 HOH HOH A . C 3 HOH 15 166 16 HOH HOH A . C 3 HOH 16 167 17 HOH HOH A . C 3 HOH 17 168 18 HOH HOH A . C 3 HOH 18 169 19 HOH HOH A . C 3 HOH 19 170 20 HOH HOH A . C 3 HOH 20 171 21 HOH HOH A . C 3 HOH 21 172 22 HOH HOH A . C 3 HOH 22 173 23 HOH HOH A . C 3 HOH 23 174 24 HOH HOH A . C 3 HOH 24 175 25 HOH HOH A . C 3 HOH 25 176 26 HOH HOH A . C 3 HOH 26 177 27 HOH HOH A . C 3 HOH 27 178 28 HOH HOH A . C 3 HOH 28 179 29 HOH HOH A . C 3 HOH 29 180 30 HOH HOH A . C 3 HOH 30 181 31 HOH HOH A . C 3 HOH 31 182 32 HOH HOH A . C 3 HOH 32 183 33 HOH HOH A . C 3 HOH 33 184 34 HOH HOH A . C 3 HOH 34 185 35 HOH HOH A . C 3 HOH 35 186 36 HOH HOH A . C 3 HOH 36 187 37 HOH HOH A . C 3 HOH 37 188 38 HOH HOH A . C 3 HOH 38 189 39 HOH HOH A . C 3 HOH 39 190 40 HOH HOH A . C 3 HOH 40 191 41 HOH HOH A . C 3 HOH 41 192 42 HOH HOH A . C 3 HOH 42 193 43 HOH HOH A . C 3 HOH 43 194 44 HOH HOH A . C 3 HOH 44 195 45 HOH HOH A . C 3 HOH 45 196 46 HOH HOH A . C 3 HOH 46 197 47 HOH HOH A . C 3 HOH 47 198 48 HOH HOH A . C 3 HOH 48 199 49 HOH HOH A . C 3 HOH 49 200 50 HOH HOH A . C 3 HOH 50 201 51 HOH HOH A . C 3 HOH 51 202 52 HOH HOH A . C 3 HOH 52 203 53 HOH HOH A . C 3 HOH 53 204 54 HOH HOH A . C 3 HOH 54 205 55 HOH HOH A . C 3 HOH 55 206 56 HOH HOH A . C 3 HOH 56 207 57 HOH HOH A . C 3 HOH 57 208 58 HOH HOH A . C 3 HOH 58 209 59 HOH HOH A . C 3 HOH 59 210 60 HOH HOH A . C 3 HOH 60 211 61 HOH HOH A . C 3 HOH 61 212 62 HOH HOH A . C 3 HOH 62 213 63 HOH HOH A . C 3 HOH 63 214 64 HOH HOH A . C 3 HOH 64 215 65 HOH HOH A . C 3 HOH 65 216 66 HOH HOH A . C 3 HOH 66 217 67 HOH HOH A . C 3 HOH 67 218 68 HOH HOH A . C 3 HOH 68 219 69 HOH HOH A . C 3 HOH 69 220 70 HOH HOH A . C 3 HOH 70 221 71 HOH HOH A . C 3 HOH 71 222 72 HOH HOH A . C 3 HOH 72 223 73 HOH HOH A . C 3 HOH 73 224 74 HOH HOH A . C 3 HOH 74 225 75 HOH HOH A . C 3 HOH 75 226 76 HOH HOH A . C 3 HOH 76 227 77 HOH HOH A . C 3 HOH 77 228 78 HOH HOH A . C 3 HOH 78 229 79 HOH HOH A . C 3 HOH 79 230 80 HOH HOH A . C 3 HOH 80 231 81 HOH HOH A . C 3 HOH 81 232 82 HOH HOH A . C 3 HOH 82 233 83 HOH HOH A . C 3 HOH 83 234 84 HOH HOH A . C 3 HOH 84 235 85 HOH HOH A . C 3 HOH 85 236 86 HOH HOH A . C 3 HOH 86 237 87 HOH HOH A . C 3 HOH 87 238 88 HOH HOH A . C 3 HOH 88 239 89 HOH HOH A . C 3 HOH 89 240 90 HOH HOH A . C 3 HOH 90 241 91 HOH HOH A . C 3 HOH 91 242 92 HOH HOH A . C 3 HOH 92 243 93 HOH HOH A . C 3 HOH 93 244 94 HOH HOH A . C 3 HOH 94 245 95 HOH HOH A . C 3 HOH 95 246 96 HOH HOH A . C 3 HOH 96 247 97 HOH HOH A . C 3 HOH 97 248 98 HOH HOH A . C 3 HOH 98 249 99 HOH HOH A . C 3 HOH 99 250 100 HOH HOH A . C 3 HOH 100 251 101 HOH HOH A . C 3 HOH 101 252 102 HOH HOH A . C 3 HOH 102 253 103 HOH HOH A . C 3 HOH 103 254 104 HOH HOH A . C 3 HOH 104 255 105 HOH HOH A . C 3 HOH 105 256 106 HOH HOH A . C 3 HOH 106 257 107 HOH HOH A . C 3 HOH 107 258 108 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 15 A MSE 14 ? MET SELENOMETHIONINE 2 A MSE 139 A MSE 138 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4760 ? 1 MORE -31 ? 1 'SSA (A^2)' 14140 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 217 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-19 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Refinement description' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software 3 5 'Structure model' struct_conn 4 6 'Structure model' database_2 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_software.classification' 4 5 'Structure model' '_software.contact_author' 5 5 'Structure model' '_software.contact_author_email' 6 5 'Structure model' '_software.language' 7 5 'Structure model' '_software.location' 8 5 'Structure model' '_software.name' 9 5 'Structure model' '_software.type' 10 5 'Structure model' '_software.version' 11 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 6 'Structure model' '_database_2.pdbx_DOI' 13 6 'Structure model' '_database_2.pdbx_database_accession' 14 6 'Structure model' '_struct_ref_seq_dif.details' 15 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.0280 _pdbx_refine_tls.origin_y 41.3050 _pdbx_refine_tls.origin_z 0.9870 _pdbx_refine_tls.T[1][1] -0.0469 _pdbx_refine_tls.T[2][2] -0.0695 _pdbx_refine_tls.T[3][3] -0.0573 _pdbx_refine_tls.T[1][2] 0.0198 _pdbx_refine_tls.T[1][3] 0.0291 _pdbx_refine_tls.T[2][3] 0.0010 _pdbx_refine_tls.L[1][1] 2.3041 _pdbx_refine_tls.L[2][2] 1.2989 _pdbx_refine_tls.L[3][3] 1.4517 _pdbx_refine_tls.L[1][2] -0.8257 _pdbx_refine_tls.L[1][3] -0.4616 _pdbx_refine_tls.L[2][3] -0.2620 _pdbx_refine_tls.S[1][1] -0.0684 _pdbx_refine_tls.S[2][2] 0.0944 _pdbx_refine_tls.S[3][3] -0.0260 _pdbx_refine_tls.S[1][2] -0.0392 _pdbx_refine_tls.S[1][3] -0.0959 _pdbx_refine_tls.S[2][3] 0.1316 _pdbx_refine_tls.S[2][1] 0.1387 _pdbx_refine_tls.S[3][1] -0.1722 _pdbx_refine_tls.S[3][2] -0.0265 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 5 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 151 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 4 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 150 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 5 PDB_EXTRACT 3.00 'March. 27, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 78 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 43.06 _pdbx_validate_torsion.psi -133.75 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 8 ? NE ? A ARG 9 NE 2 1 Y 1 A ARG 8 ? CZ ? A ARG 9 CZ 3 1 Y 1 A ARG 8 ? NH1 ? A ARG 9 NH1 4 1 Y 1 A ARG 8 ? NH2 ? A ARG 9 NH2 5 1 Y 1 A LYS 15 ? CE ? A LYS 16 CE 6 1 Y 1 A LYS 15 ? NZ ? A LYS 16 NZ 7 1 Y 1 A HIS 28 ? ND1 ? A HIS 29 ND1 8 1 Y 1 A HIS 28 ? CD2 ? A HIS 29 CD2 9 1 Y 1 A HIS 28 ? CE1 ? A HIS 29 CE1 10 1 Y 1 A HIS 28 ? NE2 ? A HIS 29 NE2 11 1 Y 1 A GLN 30 ? CG ? A GLN 31 CG 12 1 Y 1 A GLN 30 ? CD ? A GLN 31 CD 13 1 Y 1 A GLN 30 ? OE1 ? A GLN 31 OE1 14 1 Y 1 A GLN 30 ? NE2 ? A GLN 31 NE2 15 1 Y 1 A LYS 32 ? CG ? A LYS 33 CG 16 1 Y 1 A LYS 32 ? CD ? A LYS 33 CD 17 1 Y 1 A LYS 32 ? CE ? A LYS 33 CE 18 1 Y 1 A LYS 32 ? NZ ? A LYS 33 NZ 19 1 Y 1 A ARG 127 ? CZ ? A ARG 128 CZ 20 1 Y 1 A ARG 127 ? NH1 ? A ARG 128 NH1 21 1 Y 1 A ARG 127 ? NH2 ? A ARG 128 NH2 22 1 Y 1 A LYS 149 ? CE ? A LYS 150 CE 23 1 Y 1 A LYS 149 ? NZ ? A LYS 150 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A ALA 2 ? A ALA 3 4 1 Y 1 A ASN 3 ? A ASN 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 water HOH #