data_2Q9R # _entry.id 2Q9R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Q9R pdb_00002q9r 10.2210/pdb2q9r/pdb RCSB RCSB043327 ? ? WWPDB D_1000043327 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 374572 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2Q9R _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-06-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of protein of unknown function (YP_001051499.1) from Shewanella baltica OS155 at 1.91 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2Q9R _cell.length_a 68.570 _cell.length_b 77.140 _cell.length_c 87.170 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Q9R _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein of unknown function' 22431.959 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 'BENZOIC ACID' 122.121 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 6 ? ? ? ? 6 water nat water 18.015 124 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)TKKTGFFKRLKALTLPQKQLFATALCQR(MSE)LPNYQLFSEVCEFGDPAVLSTALELLWQSLYDPKLKFNIDV HLQRLEDNTPEPADFEAYGVYPA(MSE)DAVVAISTLLGAIQGKIEEDIVNISKLSSSTVANYIEAISDVDLVDEALDDF VFAHEV(MSE)EEEKELQNSLLEIIEENPKITAELVKGLRKDIIETGVSNIGISVA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTKKTGFFKRLKALTLPQKQLFATALCQRMLPNYQLFSEVCEFGDPAVLSTALELLWQSLYDPKLKFNIDVHLQRLEDN TPEPADFEAYGVYPAMDAVVAISTLLGAIQGKIEEDIVNISKLSSSTVANYIEAISDVDLVDEALDDFVFAHEVMEEEKE LQNSLLEIIEENPKITAELVKGLRKDIIETGVSNIGISVA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 374572 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 LYS n 1 5 LYS n 1 6 THR n 1 7 GLY n 1 8 PHE n 1 9 PHE n 1 10 LYS n 1 11 ARG n 1 12 LEU n 1 13 LYS n 1 14 ALA n 1 15 LEU n 1 16 THR n 1 17 LEU n 1 18 PRO n 1 19 GLN n 1 20 LYS n 1 21 GLN n 1 22 LEU n 1 23 PHE n 1 24 ALA n 1 25 THR n 1 26 ALA n 1 27 LEU n 1 28 CYS n 1 29 GLN n 1 30 ARG n 1 31 MSE n 1 32 LEU n 1 33 PRO n 1 34 ASN n 1 35 TYR n 1 36 GLN n 1 37 LEU n 1 38 PHE n 1 39 SER n 1 40 GLU n 1 41 VAL n 1 42 CYS n 1 43 GLU n 1 44 PHE n 1 45 GLY n 1 46 ASP n 1 47 PRO n 1 48 ALA n 1 49 VAL n 1 50 LEU n 1 51 SER n 1 52 THR n 1 53 ALA n 1 54 LEU n 1 55 GLU n 1 56 LEU n 1 57 LEU n 1 58 TRP n 1 59 GLN n 1 60 SER n 1 61 LEU n 1 62 TYR n 1 63 ASP n 1 64 PRO n 1 65 LYS n 1 66 LEU n 1 67 LYS n 1 68 PHE n 1 69 ASN n 1 70 ILE n 1 71 ASP n 1 72 VAL n 1 73 HIS n 1 74 LEU n 1 75 GLN n 1 76 ARG n 1 77 LEU n 1 78 GLU n 1 79 ASP n 1 80 ASN n 1 81 THR n 1 82 PRO n 1 83 GLU n 1 84 PRO n 1 85 ALA n 1 86 ASP n 1 87 PHE n 1 88 GLU n 1 89 ALA n 1 90 TYR n 1 91 GLY n 1 92 VAL n 1 93 TYR n 1 94 PRO n 1 95 ALA n 1 96 MSE n 1 97 ASP n 1 98 ALA n 1 99 VAL n 1 100 VAL n 1 101 ALA n 1 102 ILE n 1 103 SER n 1 104 THR n 1 105 LEU n 1 106 LEU n 1 107 GLY n 1 108 ALA n 1 109 ILE n 1 110 GLN n 1 111 GLY n 1 112 LYS n 1 113 ILE n 1 114 GLU n 1 115 GLU n 1 116 ASP n 1 117 ILE n 1 118 VAL n 1 119 ASN n 1 120 ILE n 1 121 SER n 1 122 LYS n 1 123 LEU n 1 124 SER n 1 125 SER n 1 126 SER n 1 127 THR n 1 128 VAL n 1 129 ALA n 1 130 ASN n 1 131 TYR n 1 132 ILE n 1 133 GLU n 1 134 ALA n 1 135 ILE n 1 136 SER n 1 137 ASP n 1 138 VAL n 1 139 ASP n 1 140 LEU n 1 141 VAL n 1 142 ASP n 1 143 GLU n 1 144 ALA n 1 145 LEU n 1 146 ASP n 1 147 ASP n 1 148 PHE n 1 149 VAL n 1 150 PHE n 1 151 ALA n 1 152 HIS n 1 153 GLU n 1 154 VAL n 1 155 MSE n 1 156 GLU n 1 157 GLU n 1 158 GLU n 1 159 LYS n 1 160 GLU n 1 161 LEU n 1 162 GLN n 1 163 ASN n 1 164 SER n 1 165 LEU n 1 166 LEU n 1 167 GLU n 1 168 ILE n 1 169 ILE n 1 170 GLU n 1 171 GLU n 1 172 ASN n 1 173 PRO n 1 174 LYS n 1 175 ILE n 1 176 THR n 1 177 ALA n 1 178 GLU n 1 179 LEU n 1 180 VAL n 1 181 LYS n 1 182 GLY n 1 183 LEU n 1 184 ARG n 1 185 LYS n 1 186 ASP n 1 187 ILE n 1 188 ILE n 1 189 GLU n 1 190 THR n 1 191 GLY n 1 192 VAL n 1 193 SER n 1 194 ASN n 1 195 ILE n 1 196 GLY n 1 197 ILE n 1 198 SER n 1 199 VAL n 1 200 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Shewanella _entity_src_gen.pdbx_gene_src_gene 'YP_001051499.1, Sbal_3149' _entity_src_gen.gene_src_species 'Shewanella baltica' _entity_src_gen.gene_src_strain OS155 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shewanella baltica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 325240 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A3D7B7_9GAMM _struct_ref.pdbx_db_accession A3D7B7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTKKTGFFKRLKALTLPQKQLFATALCQRMLPNYQLFSEVCEFGDPAVLSTALELLWQSLYDPKLKFNIDVHLQRLEDNT PEPADFEAYGVYPAMDAVVAISTLLGAIQGKIEEDIVNISKLSSSTVANYIEAISDVDLVDEALDDFVFAHEVMEEEKEL QNSLLEIIEENPKITAELVKGLRKDIIETGVSNIGISVA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Q9R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 200 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A3D7B7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 199 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Q9R GLY A 1 ? UNP A3D7B7 ? ? 'expression tag' 0 1 1 2Q9R MSE A 2 ? UNP A3D7B7 MET 1 'modified residue' 1 2 1 2Q9R MSE A 31 ? UNP A3D7B7 MET 30 'modified residue' 30 3 1 2Q9R MSE A 96 ? UNP A3D7B7 MET 95 'modified residue' 95 4 1 2Q9R MSE A 155 ? UNP A3D7B7 MET 154 'modified residue' 154 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BEZ non-polymer . 'BENZOIC ACID' ? 'C7 H6 O2' 122.121 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2Q9R # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 2.4M (NH4)2SO4, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2007-06-03 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97922 1.0 3 0.97905 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97922, 0.97905' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 2Q9R _reflns.d_resolution_high 1.91 _reflns.d_resolution_low 29.062 _reflns.number_obs 18196 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_netI_over_sigmaI 13.640 _reflns.percent_possible_obs 99.200 _reflns.B_iso_Wilson_estimate 42.205 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.91 1.98 8278 ? 3432 0.633 1.6 ? ? ? ? ? 97.20 1 1 1.98 2.06 8563 ? 3456 0.474 2.2 ? ? ? ? ? 99.70 2 1 2.06 2.15 8119 ? 3329 0.327 3.2 ? ? ? ? ? 99.40 3 1 2.15 2.26 8135 ? 3320 0.242 4.5 ? ? ? ? ? 99.30 4 1 2.26 2.41 9195 ? 3665 0.161 6.2 ? ? ? ? ? 99.30 5 1 2.41 2.59 8369 ? 3337 0.115 8.6 ? ? ? ? ? 99.60 6 1 2.59 2.85 8650 ? 3462 0.080 12.1 ? ? ? ? ? 99.70 7 1 2.85 3.26 8726 ? 3459 0.047 19.2 ? ? ? ? ? 99.90 8 1 3.26 4.10 8623 ? 3453 0.027 33.3 ? ? ? ? ? 99.80 9 1 4.10 29.062 8669 ? 3444 0.017 45.0 ? ? ? ? ? 97.70 10 1 # _refine.entry_id 2Q9R _refine.ls_d_res_high 1.910 _refine.ls_d_res_low 29.062 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.570 _refine.ls_number_reflns_obs 18169 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. THE BENZOIC ACID (BEZ) MOLECULE IS ASSIGNED BASED ON THE ELECTRON DENSITY AND ITS INTERACTION WITH THE PROTEIN. IT COULD BE SOME RELATED COMPOUND WITH A SIMILAR STRUCTURE. 5. GOL, SO4 AND ACT ARE PRESENT IN CRYSTALLIZATION/CRYO BUFFER. ACT SITS ON SPECIAL POSITION AND COULD BE A NOISE. ; _refine.ls_R_factor_obs 0.171 _refine.ls_R_factor_R_work 0.169 _refine.ls_R_factor_R_free 0.215 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 923 _refine.B_iso_mean 37.634 _refine.aniso_B[1][1] -1.060 _refine.aniso_B[2][2] 1.070 _refine.aniso_B[3][3] -0.010 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.pdbx_overall_ESU_R 0.133 _refine.pdbx_overall_ESU_R_Free 0.132 _refine.overall_SU_ML 0.108 _refine.overall_SU_B 7.625 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1503 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1686 _refine_hist.d_res_high 1.910 _refine_hist.d_res_low 29.062 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1610 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1040 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2192 1.456 2.008 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2577 0.976 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 206 4.730 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 70 34.010 26.429 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 266 13.335 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 19.123 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 259 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1768 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 282 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 382 0.221 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1001 0.174 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 809 0.183 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 779 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 91 0.163 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 10 0.218 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 34 0.187 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 11 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1037 2.169 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 396 0.547 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1621 3.325 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 646 5.987 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 565 8.186 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.910 _refine_ls_shell.d_res_low 1.959 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.470 _refine_ls_shell.number_reflns_R_work 1213 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.333 _refine_ls_shell.R_factor_R_free 0.385 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1272 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Q9R _struct.title 'CRYSTAL STRUCTURE OF a DUF416 family protein (SBAL_3149) FROM SHEWANELLA BALTICA OS155 AT 1.91 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 2Q9R # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 6 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY AND PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 7 ? LEU A 15 ? GLY A 6 LEU A 14 1 ? 9 HELX_P HELX_P2 2 THR A 16 ? GLU A 43 ? THR A 15 GLU A 42 1 ? 28 HELX_P HELX_P3 3 ASP A 46 ? ASP A 63 ? ASP A 45 ASP A 62 1 ? 18 HELX_P HELX_P4 4 ASN A 69 ? ASN A 80 ? ASN A 68 ASN A 79 1 ? 12 HELX_P HELX_P5 5 GLU A 83 ? PHE A 87 ? GLU A 82 PHE A 86 5 ? 5 HELX_P HELX_P6 6 GLY A 91 ? LYS A 112 ? GLY A 90 LYS A 111 1 ? 22 HELX_P HELX_P7 7 ILE A 113 ? ASN A 119 ? ILE A 112 ASN A 118 1 ? 7 HELX_P HELX_P8 8 ASN A 119 ? ASP A 137 ? ASN A 118 ASP A 136 1 ? 19 HELX_P HELX_P9 9 VAL A 141 ? ALA A 151 ? VAL A 140 ALA A 150 1 ? 11 HELX_P HELX_P10 10 HIS A 152 ? GLU A 171 ? HIS A 151 GLU A 170 1 ? 20 HELX_P HELX_P11 11 THR A 176 ? GLY A 191 ? THR A 175 GLY A 190 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ARG 30 C ? ? ? 1_555 A MSE 31 N ? ? A ARG 29 A MSE 30 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? A MSE 31 C ? ? ? 1_555 A LEU 32 N ? ? A MSE 30 A LEU 31 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale3 covale both ? A ALA 95 C ? ? ? 1_555 A MSE 96 N ? ? A ALA 94 A MSE 95 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A MSE 96 C ? ? ? 1_555 A ASP 97 N ? ? A MSE 95 A ASP 96 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale5 covale both ? A VAL 154 C ? ? ? 1_555 A MSE 155 N ? ? A VAL 153 A MSE 154 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale6 covale both ? A MSE 155 C ? ? ? 1_555 A GLU 156 N ? ? A MSE 154 A GLU 155 1_555 ? ? ? ? ? ? ? 1.320 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 200 ? 5 'BINDING SITE FOR RESIDUE SO4 A 200' AC2 Software A SO4 201 ? 6 'BINDING SITE FOR RESIDUE SO4 A 201' AC3 Software A ACT 202 ? 4 'BINDING SITE FOR RESIDUE ACT A 202' AC4 Software A BEZ 203 ? 7 'BINDING SITE FOR RESIDUE BEZ A 203' AC5 Software A GOL 204 ? 5 'BINDING SITE FOR RESIDUE GOL A 204' AC6 Software A GOL 205 ? 4 'BINDING SITE FOR RESIDUE GOL A 205' AC7 Software A GOL 206 ? 6 'BINDING SITE FOR RESIDUE GOL A 206' AC8 Software A GOL 207 ? 5 'BINDING SITE FOR RESIDUE GOL A 207' AC9 Software A GOL 208 ? 2 'BINDING SITE FOR RESIDUE GOL A 208' BC1 Software A GOL 209 ? 2 'BINDING SITE FOR RESIDUE GOL A 209' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 PHE A 87 ? PHE A 86 . ? 1_555 ? 2 AC1 5 GLU A 88 ? GLU A 87 . ? 1_555 ? 3 AC1 5 ALA A 89 ? ALA A 88 . ? 1_555 ? 4 AC1 5 HOH L . ? HOH A 274 . ? 4_565 ? 5 AC1 5 HOH L . ? HOH A 297 . ? 4_565 ? 6 AC2 6 PHE A 68 ? PHE A 67 . ? 1_555 ? 7 AC2 6 ASN A 69 ? ASN A 68 . ? 1_555 ? 8 AC2 6 ILE A 70 ? ILE A 69 . ? 1_555 ? 9 AC2 6 ASP A 71 ? ASP A 70 . ? 1_555 ? 10 AC2 6 GLN A 110 ? GLN A 109 . ? 1_555 ? 11 AC2 6 HOH L . ? HOH A 332 . ? 1_555 ? 12 AC3 4 GLU A 157 ? GLU A 156 . ? 1_555 ? 13 AC3 4 GLU A 157 ? GLU A 156 . ? 4_565 ? 14 AC3 4 HOH L . ? HOH A 271 . ? 1_555 ? 15 AC3 4 HOH L . ? HOH A 271 . ? 4_565 ? 16 AC4 7 ASN A 34 ? ASN A 33 . ? 1_555 ? 17 AC4 7 GLY A 91 ? GLY A 90 . ? 1_555 ? 18 AC4 7 SER A 136 ? SER A 135 . ? 4_565 ? 19 AC4 7 PHE A 148 ? PHE A 147 . ? 4_565 ? 20 AC4 7 HIS A 152 ? HIS A 151 . ? 4_565 ? 21 AC4 7 HOH L . ? HOH A 213 . ? 1_555 ? 22 AC4 7 HOH L . ? HOH A 215 . ? 1_555 ? 23 AC5 5 SER A 60 ? SER A 59 . ? 1_555 ? 24 AC5 5 LEU A 66 ? LEU A 65 . ? 1_555 ? 25 AC5 5 LYS A 67 ? LYS A 66 . ? 1_555 ? 26 AC5 5 PHE A 68 ? PHE A 67 . ? 1_555 ? 27 AC5 5 HOH L . ? HOH A 281 . ? 1_555 ? 28 AC6 4 PHE A 8 ? PHE A 7 . ? 1_555 ? 29 AC6 4 LYS A 159 ? LYS A 158 . ? 1_555 ? 30 AC6 4 ASN A 163 ? ASN A 162 . ? 1_555 ? 31 AC6 4 GOL K . ? GOL A 209 . ? 1_555 ? 32 AC7 6 LEU A 161 ? LEU A 160 . ? 1_555 ? 33 AC7 6 SER A 164 ? SER A 163 . ? 1_555 ? 34 AC7 6 ILE A 168 ? ILE A 167 . ? 1_555 ? 35 AC7 6 LEU A 183 ? LEU A 182 . ? 1_555 ? 36 AC7 6 ASP A 186 ? ASP A 185 . ? 1_555 ? 37 AC7 6 HOH L . ? HOH A 270 . ? 1_555 ? 38 AC8 5 GLU A 40 ? GLU A 39 . ? 1_555 ? 39 AC8 5 ASP A 147 ? ASP A 146 . ? 4_565 ? 40 AC8 5 PHE A 148 ? PHE A 147 . ? 4_565 ? 41 AC8 5 VAL A 199 ? VAL A 198 . ? 1_555 ? 42 AC8 5 HOH L . ? HOH A 243 . ? 4_565 ? 43 AC9 2 GLY A 45 ? GLY A 44 . ? 1_555 ? 44 AC9 2 ASN A 80 ? ASN A 79 . ? 1_555 ? 45 BC1 2 ASP A 146 ? ASP A 145 . ? 1_555 ? 46 BC1 2 GOL G . ? GOL A 205 . ? 1_555 ? # _atom_sites.entry_id 2Q9R _atom_sites.fract_transf_matrix[1][1] 0.014584 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012963 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011472 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 THR 3 2 ? ? ? A . n A 1 4 LYS 4 3 ? ? ? A . n A 1 5 LYS 5 4 4 LYS LYS A . n A 1 6 THR 6 5 5 THR THR A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 PHE 8 7 7 PHE PHE A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 PRO 18 17 17 PRO PRO A . n A 1 19 GLN 19 18 18 GLN GLN A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 GLN 21 20 20 GLN GLN A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 PHE 23 22 22 PHE PHE A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 THR 25 24 24 THR THR A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 CYS 28 27 27 CYS CYS A . n A 1 29 GLN 29 28 28 GLN GLN A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 MSE 31 30 30 MSE MSE A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 PRO 33 32 32 PRO PRO A . n A 1 34 ASN 34 33 33 ASN ASN A . n A 1 35 TYR 35 34 34 TYR TYR A . n A 1 36 GLN 36 35 35 GLN GLN A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 PHE 38 37 37 PHE PHE A . n A 1 39 SER 39 38 38 SER SER A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 CYS 42 41 41 CYS CYS A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 PRO 47 46 46 PRO PRO A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 VAL 49 48 48 VAL VAL A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 SER 51 50 50 SER SER A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 TRP 58 57 57 TRP TRP A . n A 1 59 GLN 59 58 58 GLN GLN A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 PRO 64 63 63 PRO PRO A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 PHE 68 67 67 PHE PHE A . n A 1 69 ASN 69 68 68 ASN ASN A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 HIS 73 72 72 HIS HIS A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 ARG 76 75 75 ARG ARG A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 GLU 78 77 77 GLU GLU A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 ASN 80 79 79 ASN ASN A . n A 1 81 THR 81 80 80 THR THR A . n A 1 82 PRO 82 81 81 PRO PRO A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 PRO 84 83 83 PRO PRO A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 PHE 87 86 86 PHE PHE A . n A 1 88 GLU 88 87 87 GLU GLU A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 TYR 90 89 89 TYR TYR A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 PRO 94 93 93 PRO PRO A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 MSE 96 95 95 MSE MSE A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 ILE 102 101 101 ILE ILE A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 THR 104 103 103 THR THR A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 GLY 107 106 106 GLY GLY A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 GLN 110 109 109 GLN GLN A . n A 1 111 GLY 111 110 110 GLY GLY A . n A 1 112 LYS 112 111 111 LYS LYS A . n A 1 113 ILE 113 112 112 ILE ILE A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 ASP 116 115 115 ASP ASP A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 VAL 118 117 117 VAL VAL A . n A 1 119 ASN 119 118 118 ASN ASN A . n A 1 120 ILE 120 119 119 ILE ILE A . n A 1 121 SER 121 120 120 SER SER A . n A 1 122 LYS 122 121 121 LYS LYS A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 SER 124 123 123 SER SER A . n A 1 125 SER 125 124 124 SER SER A . n A 1 126 SER 126 125 125 SER SER A . n A 1 127 THR 127 126 126 THR THR A . n A 1 128 VAL 128 127 127 VAL VAL A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 ASN 130 129 129 ASN ASN A . n A 1 131 TYR 131 130 130 TYR TYR A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 GLU 133 132 132 GLU GLU A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 ILE 135 134 134 ILE ILE A . n A 1 136 SER 136 135 135 SER SER A . n A 1 137 ASP 137 136 136 ASP ASP A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 ASP 139 138 138 ASP ASP A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 VAL 141 140 140 VAL VAL A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 ALA 144 143 143 ALA ALA A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 ASP 146 145 145 ASP ASP A . n A 1 147 ASP 147 146 146 ASP ASP A . n A 1 148 PHE 148 147 147 PHE PHE A . n A 1 149 VAL 149 148 148 VAL VAL A . n A 1 150 PHE 150 149 149 PHE PHE A . n A 1 151 ALA 151 150 150 ALA ALA A . n A 1 152 HIS 152 151 151 HIS HIS A . n A 1 153 GLU 153 152 152 GLU GLU A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 MSE 155 154 154 MSE MSE A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 GLU 157 156 156 GLU GLU A . n A 1 158 GLU 158 157 157 GLU GLU A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 GLU 160 159 159 GLU GLU A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 GLN 162 161 161 GLN GLN A . n A 1 163 ASN 163 162 162 ASN ASN A . n A 1 164 SER 164 163 163 SER SER A . n A 1 165 LEU 165 164 164 LEU LEU A . n A 1 166 LEU 166 165 165 LEU LEU A . n A 1 167 GLU 167 166 166 GLU GLU A . n A 1 168 ILE 168 167 167 ILE ILE A . n A 1 169 ILE 169 168 168 ILE ILE A . n A 1 170 GLU 170 169 169 GLU GLU A . n A 1 171 GLU 171 170 170 GLU GLU A . n A 1 172 ASN 172 171 171 ASN ASN A . n A 1 173 PRO 173 172 172 PRO PRO A . n A 1 174 LYS 174 173 173 LYS LYS A . n A 1 175 ILE 175 174 174 ILE ILE A . n A 1 176 THR 176 175 175 THR THR A . n A 1 177 ALA 177 176 176 ALA ALA A . n A 1 178 GLU 178 177 177 GLU GLU A . n A 1 179 LEU 179 178 178 LEU LEU A . n A 1 180 VAL 180 179 179 VAL VAL A . n A 1 181 LYS 181 180 180 LYS LYS A . n A 1 182 GLY 182 181 181 GLY GLY A . n A 1 183 LEU 183 182 182 LEU LEU A . n A 1 184 ARG 184 183 183 ARG ARG A . n A 1 185 LYS 185 184 184 LYS LYS A . n A 1 186 ASP 186 185 185 ASP ASP A . n A 1 187 ILE 187 186 186 ILE ILE A . n A 1 188 ILE 188 187 187 ILE ILE A . n A 1 189 GLU 189 188 188 GLU GLU A . n A 1 190 THR 190 189 189 THR THR A . n A 1 191 GLY 191 190 190 GLY GLY A . n A 1 192 VAL 192 191 191 VAL VAL A . n A 1 193 SER 193 192 192 SER SER A . n A 1 194 ASN 194 193 193 ASN ASN A . n A 1 195 ILE 195 194 194 ILE ILE A . n A 1 196 GLY 196 195 195 GLY GLY A . n A 1 197 ILE 197 196 196 ILE ILE A . n A 1 198 SER 198 197 197 SER SER A . n A 1 199 VAL 199 198 198 VAL VAL A . n A 1 200 ALA 200 199 199 ALA ALA A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 200 2 SO4 SO4 A . C 2 SO4 1 201 3 SO4 SO4 A . D 3 ACT 1 202 10 ACT ACT A . E 4 BEZ 1 203 1 BEZ BEZ A . F 5 GOL 1 204 4 GOL GOL A . G 5 GOL 1 205 5 GOL GOL A . H 5 GOL 1 206 6 GOL GOL A . I 5 GOL 1 207 7 GOL GOL A . J 5 GOL 1 208 8 GOL GOL A . K 5 GOL 1 209 9 GOL GOL A . L 6 HOH 1 210 11 HOH HOH A . L 6 HOH 2 211 12 HOH HOH A . L 6 HOH 3 212 13 HOH HOH A . L 6 HOH 4 213 14 HOH HOH A . L 6 HOH 5 214 15 HOH HOH A . L 6 HOH 6 215 16 HOH HOH A . L 6 HOH 7 216 17 HOH HOH A . L 6 HOH 8 217 18 HOH HOH A . L 6 HOH 9 218 19 HOH HOH A . L 6 HOH 10 219 20 HOH HOH A . L 6 HOH 11 220 21 HOH HOH A . L 6 HOH 12 221 22 HOH HOH A . L 6 HOH 13 222 23 HOH HOH A . L 6 HOH 14 223 24 HOH HOH A . L 6 HOH 15 224 25 HOH HOH A . L 6 HOH 16 225 26 HOH HOH A . L 6 HOH 17 226 27 HOH HOH A . L 6 HOH 18 227 28 HOH HOH A . L 6 HOH 19 228 29 HOH HOH A . L 6 HOH 20 229 30 HOH HOH A . L 6 HOH 21 230 31 HOH HOH A . L 6 HOH 22 231 32 HOH HOH A . L 6 HOH 23 232 33 HOH HOH A . L 6 HOH 24 233 34 HOH HOH A . L 6 HOH 25 234 35 HOH HOH A . L 6 HOH 26 235 36 HOH HOH A . L 6 HOH 27 236 37 HOH HOH A . L 6 HOH 28 237 38 HOH HOH A . L 6 HOH 29 238 39 HOH HOH A . L 6 HOH 30 239 40 HOH HOH A . L 6 HOH 31 240 41 HOH HOH A . L 6 HOH 32 241 42 HOH HOH A . L 6 HOH 33 242 43 HOH HOH A . L 6 HOH 34 243 44 HOH HOH A . L 6 HOH 35 244 45 HOH HOH A . L 6 HOH 36 245 46 HOH HOH A . L 6 HOH 37 246 47 HOH HOH A . L 6 HOH 38 247 48 HOH HOH A . L 6 HOH 39 248 49 HOH HOH A . L 6 HOH 40 249 50 HOH HOH A . L 6 HOH 41 250 51 HOH HOH A . L 6 HOH 42 251 52 HOH HOH A . L 6 HOH 43 252 53 HOH HOH A . L 6 HOH 44 253 54 HOH HOH A . L 6 HOH 45 254 55 HOH HOH A . L 6 HOH 46 255 56 HOH HOH A . L 6 HOH 47 256 57 HOH HOH A . L 6 HOH 48 257 58 HOH HOH A . L 6 HOH 49 258 59 HOH HOH A . L 6 HOH 50 259 60 HOH HOH A . L 6 HOH 51 260 61 HOH HOH A . L 6 HOH 52 261 62 HOH HOH A . L 6 HOH 53 262 63 HOH HOH A . L 6 HOH 54 263 64 HOH HOH A . L 6 HOH 55 264 65 HOH HOH A . L 6 HOH 56 265 66 HOH HOH A . L 6 HOH 57 266 67 HOH HOH A . L 6 HOH 58 267 68 HOH HOH A . L 6 HOH 59 268 69 HOH HOH A . L 6 HOH 60 269 70 HOH HOH A . L 6 HOH 61 270 71 HOH HOH A . L 6 HOH 62 271 72 HOH HOH A . L 6 HOH 63 272 73 HOH HOH A . L 6 HOH 64 273 74 HOH HOH A . L 6 HOH 65 274 75 HOH HOH A . L 6 HOH 66 275 76 HOH HOH A . L 6 HOH 67 276 77 HOH HOH A . L 6 HOH 68 277 78 HOH HOH A . L 6 HOH 69 278 79 HOH HOH A . L 6 HOH 70 279 80 HOH HOH A . L 6 HOH 71 280 81 HOH HOH A . L 6 HOH 72 281 82 HOH HOH A . L 6 HOH 73 282 83 HOH HOH A . L 6 HOH 74 283 84 HOH HOH A . L 6 HOH 75 284 85 HOH HOH A . L 6 HOH 76 285 86 HOH HOH A . L 6 HOH 77 286 87 HOH HOH A . L 6 HOH 78 287 88 HOH HOH A . L 6 HOH 79 288 89 HOH HOH A . L 6 HOH 80 289 90 HOH HOH A . L 6 HOH 81 290 91 HOH HOH A . L 6 HOH 82 291 92 HOH HOH A . L 6 HOH 83 292 93 HOH HOH A . L 6 HOH 84 293 94 HOH HOH A . L 6 HOH 85 294 95 HOH HOH A . L 6 HOH 86 295 96 HOH HOH A . L 6 HOH 87 296 97 HOH HOH A . L 6 HOH 88 297 98 HOH HOH A . L 6 HOH 89 298 99 HOH HOH A . L 6 HOH 90 299 100 HOH HOH A . L 6 HOH 91 300 101 HOH HOH A . L 6 HOH 92 301 102 HOH HOH A . L 6 HOH 93 302 103 HOH HOH A . L 6 HOH 94 303 104 HOH HOH A . L 6 HOH 95 304 105 HOH HOH A . L 6 HOH 96 305 106 HOH HOH A . L 6 HOH 97 306 107 HOH HOH A . L 6 HOH 98 307 108 HOH HOH A . L 6 HOH 99 308 109 HOH HOH A . L 6 HOH 100 309 110 HOH HOH A . L 6 HOH 101 310 111 HOH HOH A . L 6 HOH 102 311 112 HOH HOH A . L 6 HOH 103 312 113 HOH HOH A . L 6 HOH 104 313 114 HOH HOH A . L 6 HOH 105 314 115 HOH HOH A . L 6 HOH 106 315 116 HOH HOH A . L 6 HOH 107 316 117 HOH HOH A . L 6 HOH 108 317 118 HOH HOH A . L 6 HOH 109 318 119 HOH HOH A . L 6 HOH 110 319 120 HOH HOH A . L 6 HOH 111 320 121 HOH HOH A . L 6 HOH 112 321 122 HOH HOH A . L 6 HOH 113 322 123 HOH HOH A . L 6 HOH 114 323 124 HOH HOH A . L 6 HOH 115 324 125 HOH HOH A . L 6 HOH 116 325 126 HOH HOH A . L 6 HOH 117 326 127 HOH HOH A . L 6 HOH 118 327 128 HOH HOH A . L 6 HOH 119 328 129 HOH HOH A . L 6 HOH 120 329 130 HOH HOH A . L 6 HOH 121 330 131 HOH HOH A . L 6 HOH 122 331 132 HOH HOH A . L 6 HOH 123 332 133 HOH HOH A . L 6 HOH 124 333 134 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 31 A MSE 30 ? MET SELENOMETHIONINE 2 A MSE 96 A MSE 95 ? MET SELENOMETHIONINE 3 A MSE 155 A MSE 154 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 77.1400000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A ACT 202 ? D ACT . 2 1 A ACT 202 ? D ACT . 3 1 A HOH 263 ? L HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-26 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2017-10-25 6 'Structure model' 1 5 2019-07-24 7 'Structure model' 1 6 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Author supporting evidence' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' 10 7 'Structure model' 'Database references' 11 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_struct_assembly_auth_evidence 3 6 'Structure model' software 4 6 'Structure model' struct_conn 5 7 'Structure model' database_2 6 7 'Structure model' struct_ref_seq_dif 7 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 6 'Structure model' '_software.classification' 4 6 'Structure model' '_software.contact_author' 5 6 'Structure model' '_software.contact_author_email' 6 6 'Structure model' '_software.language' 7 6 'Structure model' '_software.location' 8 6 'Structure model' '_software.name' 9 6 'Structure model' '_software.type' 10 6 'Structure model' '_software.version' 11 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 7 'Structure model' '_database_2.pdbx_DOI' 13 7 'Structure model' '_database_2.pdbx_database_accession' 14 7 'Structure model' '_struct_ref_seq_dif.details' 15 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 40.5330 _pdbx_refine_tls.origin_y 22.0860 _pdbx_refine_tls.origin_z -5.5180 _pdbx_refine_tls.T[1][1] -0.0469 _pdbx_refine_tls.T[2][2] -0.0491 _pdbx_refine_tls.T[3][3] -0.0173 _pdbx_refine_tls.T[1][2] 0.0541 _pdbx_refine_tls.T[1][3] -0.0033 _pdbx_refine_tls.T[2][3] -0.0518 _pdbx_refine_tls.L[1][1] 0.5927 _pdbx_refine_tls.L[2][2] 1.2690 _pdbx_refine_tls.L[3][3] 1.3045 _pdbx_refine_tls.L[1][2] 0.4534 _pdbx_refine_tls.L[1][3] 0.4909 _pdbx_refine_tls.L[2][3] 0.2252 _pdbx_refine_tls.S[1][1] 0.0165 _pdbx_refine_tls.S[2][2] -0.0143 _pdbx_refine_tls.S[3][3] -0.0022 _pdbx_refine_tls.S[1][2] -0.0737 _pdbx_refine_tls.S[1][3] -0.0219 _pdbx_refine_tls.S[2][3] 0.0500 _pdbx_refine_tls.S[2][1] -0.0338 _pdbx_refine_tls.S[3][1] 0.1229 _pdbx_refine_tls.S[3][2] 0.0715 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 5 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 200 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 4 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 199 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.00 'March. 27, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY AND SURFACE ANALYSIS SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. ; 999 ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MSE _pdbx_validate_rmsd_angle.auth_seq_id_1 154 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SE _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MSE _pdbx_validate_rmsd_angle.auth_seq_id_2 154 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MSE _pdbx_validate_rmsd_angle.auth_seq_id_3 154 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 85.16 _pdbx_validate_rmsd_angle.angle_target_value 98.90 _pdbx_validate_rmsd_angle.angle_deviation -13.74 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.20 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 141 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 56.52 _pdbx_validate_torsion.psi -132.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 4 ? CG ? A LYS 5 CG 2 1 Y 1 A LYS 4 ? CD ? A LYS 5 CD 3 1 Y 1 A LYS 4 ? CE ? A LYS 5 CE 4 1 Y 1 A LYS 4 ? NZ ? A LYS 5 NZ 5 1 Y 1 A LYS 9 ? CG ? A LYS 10 CG 6 1 Y 1 A LYS 9 ? CD ? A LYS 10 CD 7 1 Y 1 A LYS 9 ? CE ? A LYS 10 CE 8 1 Y 1 A LYS 9 ? NZ ? A LYS 10 NZ 9 1 Y 1 A LYS 64 ? CD ? A LYS 65 CD 10 1 Y 1 A LYS 64 ? CE ? A LYS 65 CE 11 1 Y 1 A LYS 64 ? NZ ? A LYS 65 NZ 12 1 Y 1 A LYS 66 ? CD ? A LYS 67 CD 13 1 Y 1 A LYS 66 ? CE ? A LYS 67 CE 14 1 Y 1 A LYS 66 ? NZ ? A LYS 67 NZ 15 1 Y 1 A LYS 111 ? CD ? A LYS 112 CD 16 1 Y 1 A LYS 111 ? CE ? A LYS 112 CE 17 1 Y 1 A LYS 111 ? NZ ? A LYS 112 NZ 18 1 Y 1 A GLU 114 ? CD ? A GLU 115 CD 19 1 Y 1 A GLU 114 ? OE1 ? A GLU 115 OE1 20 1 Y 1 A GLU 114 ? OE2 ? A GLU 115 OE2 21 1 Y 1 A ILE 134 ? CD1 ? A ILE 135 CD1 22 1 Y 1 A GLU 142 ? CG ? A GLU 143 CG 23 1 Y 1 A GLU 142 ? CD ? A GLU 143 CD 24 1 Y 1 A GLU 142 ? OE1 ? A GLU 143 OE1 25 1 Y 1 A GLU 142 ? OE2 ? A GLU 143 OE2 26 1 Y 1 A LYS 180 ? CE ? A LYS 181 CE 27 1 Y 1 A LYS 180 ? NZ ? A LYS 181 NZ 28 1 Y 1 A ALA 199 ? CA ? A ALA 200 CA 29 1 Y 1 A ALA 199 ? C ? A ALA 200 C 30 1 Y 1 A ALA 199 ? O ? A ALA 200 O 31 1 Y 1 A ALA 199 ? CB ? A ALA 200 CB # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A THR 2 ? A THR 3 4 1 Y 1 A LYS 3 ? A LYS 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'ACETATE ION' ACT 4 'BENZOIC ACID' BEZ 5 GLYCEROL GOL 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #