data_2QDV # _entry.id 2QDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QDV pdb_00002qdv 10.2210/pdb2qdv/pdb RCSB RCSB043474 ? ? WWPDB D_1000043474 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2QDW _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2QDV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-06-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Carrell, C.J.' 1 'Ma, J.K.' 2 'Wang, Y.' 3 'Davidson, V.L.' 4 'Mathews, F.S.' 5 # _citation.id primary _citation.title ;A single methionine residue dictates the kinetic mechanism of interprotein electron transfer from methylamine dehydrogenase to amicyanin. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 46 _citation.page_first 11137 _citation.page_last 11146 _citation.year 2007 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17824674 _citation.pdbx_database_id_DOI 10.1021/bi7012307 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ma, J.K.' 1 ? primary 'Wang, Y.' 2 ? primary 'Carrell, C.J.' 3 ? primary 'Mathews, F.S.' 4 ? primary 'Davidson, V.L.' 5 ? # _cell.entry_id 2QDV _cell.length_a 28.360 _cell.length_b 55.390 _cell.length_c 27.010 _cell.angle_alpha 90.00 _cell.angle_beta 94.82 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QDV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Amicyanin 11461.053 1 ? M51A ? ? 2 non-polymer syn 'COPPER (II) ION' 63.546 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 196 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;DKATIPSESPFAAAEVADGAIVVDIAK(MHO)KYETPELHVKVGDTVTWINREAAPHNVHFVAGVLGEAALKGPMMKKEQ AYSLTFTEAGTYDYHCTPHPFMRGKVVVE ; _entity_poly.pdbx_seq_one_letter_code_can ;DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAAPHNVHFVAGVLGEAALKGPMMKKEQAYSL TFTEAGTYDYHCTPHPFMRGKVVVE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 LYS n 1 3 ALA n 1 4 THR n 1 5 ILE n 1 6 PRO n 1 7 SER n 1 8 GLU n 1 9 SER n 1 10 PRO n 1 11 PHE n 1 12 ALA n 1 13 ALA n 1 14 ALA n 1 15 GLU n 1 16 VAL n 1 17 ALA n 1 18 ASP n 1 19 GLY n 1 20 ALA n 1 21 ILE n 1 22 VAL n 1 23 VAL n 1 24 ASP n 1 25 ILE n 1 26 ALA n 1 27 LYS n 1 28 MHO y 1 28 MET y 1 29 LYS n 1 30 TYR n 1 31 GLU n 1 32 THR n 1 33 PRO n 1 34 GLU n 1 35 LEU n 1 36 HIS n 1 37 VAL n 1 38 LYS n 1 39 VAL n 1 40 GLY n 1 41 ASP n 1 42 THR n 1 43 VAL n 1 44 THR n 1 45 TRP n 1 46 ILE n 1 47 ASN n 1 48 ARG n 1 49 GLU n 1 50 ALA n 1 51 ALA n 1 52 PRO n 1 53 HIS n 1 54 ASN n 1 55 VAL n 1 56 HIS n 1 57 PHE n 1 58 VAL n 1 59 ALA n 1 60 GLY n 1 61 VAL n 1 62 LEU n 1 63 GLY n 1 64 GLU n 1 65 ALA n 1 66 ALA n 1 67 LEU n 1 68 LYS n 1 69 GLY n 1 70 PRO n 1 71 MET n 1 72 MET n 1 73 LYS n 1 74 LYS n 1 75 GLU n 1 76 GLN n 1 77 ALA n 1 78 TYR n 1 79 SER n 1 80 LEU n 1 81 THR n 1 82 PHE n 1 83 THR n 1 84 GLU n 1 85 ALA n 1 86 GLY n 1 87 THR n 1 88 TYR n 1 89 ASP n 1 90 TYR n 1 91 HIS n 1 92 CYS n 1 93 THR n 1 94 PRO n 1 95 HIS n 1 96 PRO n 1 97 PHE n 1 98 MET n 1 99 ARG n 1 100 GLY n 1 101 LYS n 1 102 VAL n 1 103 VAL n 1 104 VAL n 1 105 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Paracoccus _entity_src_gen.pdbx_gene_src_gene 'mauC, ami' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Paracoccus denitrificans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 266 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMEG201 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AMCY_PARDE _struct_ref.pdbx_db_accession P22364 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSL TFTEAGTYDYHCTPHPFMRGKVVVE ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QDV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 105 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22364 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 131 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 105 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2QDV _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 51 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P22364 _struct_ref_seq_dif.db_mon_id MET _struct_ref_seq_dif.pdbx_seq_db_seq_num 77 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 51 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MHO 'L-peptide linking' n S-OXYMETHIONINE ? 'C5 H11 N O3 S' 165.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2QDV _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.84 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 32.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2.5-3 M phosphate, 10 mg/ml amicyanin, pH 5.5, EVAPORATION, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-12-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Ge(111) crystal' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.90000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.90000 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C # _reflns.entry_id 2QDV _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 0.89 _reflns.d_resolution_low 30. _reflns.number_all 52990 _reflns.number_obs 52978 _reflns.percent_possible_obs 83.3 _reflns.pdbx_Rmerge_I_obs 0.040 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.89 _reflns_shell.d_res_low 0.91 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 41.2 _reflns_shell.Rmerge_I_obs 0.183 _reflns_shell.meanI_over_sigI_obs 7.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2QDV _refine.ls_number_reflns_all 52978 _refine.pdbx_ls_sigma_F 0.0 _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 0.89 _refine.ls_R_factor_obs 0.1109 _refine.ls_R_factor_all 0.1109 _refine.ls_R_factor_R_free 0.1348 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2671 _refine.ls_number_parameters 9288 _refine.ls_number_restraints 11111 _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF)' _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 52978 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_R_work 0.1096 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2QDV _refine_analyze.number_disordered_residues 6 _refine_analyze.occupancy_sum_hydrogen 790.00 _refine_analyze.occupancy_sum_non_hydrogen 1006.56 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 829 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 196 _refine_hist.number_atoms_total 1031 _refine_hist.d_res_high 0.89 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.033 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0325 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.118 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.110 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.068 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.091 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2QDV _pdbx_refine.R_factor_all_no_cutoff 0.1109 _pdbx_refine.R_factor_obs_no_cutoff 0.1096 _pdbx_refine.free_R_factor_no_cutoff 0.1348 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 2671 _pdbx_refine.R_factor_all_4sig_cutoff 0.1097 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1084 _pdbx_refine.free_R_factor_4sig_cutoff 0.1334 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 2555 _pdbx_refine.number_reflns_obs_4sig_cutoff 50811 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2QDV _struct.title 'Structure of the Cu(II) form of the M51A mutant of amicyanin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QDV _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'Beta sandwich, copper protein, electron transfer, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer.' # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 14 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id VAL _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 16 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 14 _struct_conf.end_auth_comp_id VAL _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 16 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 27 C ? ? ? 1_555 A MHO 28 N A ? A LYS 27 A MHO 28 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MHO 28 C A ? ? 1_555 A LYS 29 N ? ? A MHO 28 A LYS 29 1_555 ? ? ? ? ? ? ? 1.326 ? ? metalc1 metalc ? ? A HIS 53 ND1 ? ? ? 1_555 B CU . CU ? ? A HIS 53 A CU 1107 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc2 metalc ? ? A HIS 95 ND1 ? ? ? 1_555 B CU . CU ? ? A HIS 95 A CU 1107 1_555 ? ? ? ? ? ? ? 2.089 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 3 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 3 ? THR A 4 ? ALA A 3 THR A 4 A 2 GLN A 76 ? PHE A 82 ? GLN A 76 PHE A 82 A 3 PHE A 11 ? ALA A 12 ? PHE A 11 ALA A 12 B 1 ALA A 3 ? THR A 4 ? ALA A 3 THR A 4 B 2 GLN A 76 ? PHE A 82 ? GLN A 76 PHE A 82 B 3 THR A 42 ? ASN A 47 ? THR A 42 ASN A 47 B 4 ILE A 21 ? ALA A 26 ? ILE A 21 ALA A 26 B 5 LYS A 29 ? TYR A 30 ? LYS A 29 TYR A 30 C 1 GLU A 34 ? VAL A 37 ? GLU A 34 VAL A 37 C 2 ARG A 99 ? VAL A 104 ? ARG A 99 VAL A 104 C 3 GLY A 86 ? HIS A 91 ? GLY A 86 HIS A 91 D 1 HIS A 56 ? PHE A 57 ? HIS A 56 PHE A 57 D 2 LEU A 67 ? LYS A 68 ? LEU A 67 LYS A 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 4 ? N THR A 4 O THR A 81 ? O THR A 81 A 2 3 O ALA A 77 ? O ALA A 77 N PHE A 11 ? N PHE A 11 B 1 2 N THR A 4 ? N THR A 4 O THR A 81 ? O THR A 81 B 2 3 O LEU A 80 ? O LEU A 80 N VAL A 43 ? N VAL A 43 B 3 4 O THR A 42 ? O THR A 42 N ILE A 21 ? N ILE A 21 B 4 5 N ALA A 26 ? N ALA A 26 O LYS A 29 ? O LYS A 29 C 1 2 N LEU A 35 ? N LEU A 35 O VAL A 103 ? O VAL A 103 C 2 3 O VAL A 102 ? O VAL A 102 N TYR A 88 ? N TYR A 88 D 1 2 N PHE A 57 ? N PHE A 57 O LEU A 67 ? O LEU A 67 # _database_PDB_matrix.entry_id 2QDV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 2QDV _atom_sites.fract_transf_matrix[1][1] 0.035261 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002973 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018054 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037155 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 MHO 28 28 28 MHO MHO A . y A 1 28 MET 28 28 28 MET MET A . y A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 MET 71 71 71 MET MET A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 GLU 105 105 105 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU 1 1107 1107 CU CU A . C 3 PO4 1 201 201 PO4 PO4 A . D 4 HOH 1 1108 1 HOH HOH A . D 4 HOH 2 1109 2 HOH HOH A . D 4 HOH 3 1110 3 HOH HOH A . D 4 HOH 4 1111 4 HOH HOH A . D 4 HOH 5 1112 5 HOH HOH A . D 4 HOH 6 1113 6 HOH HOH A . D 4 HOH 7 1114 7 HOH HOH A . D 4 HOH 8 1115 8 HOH HOH A . D 4 HOH 9 1116 9 HOH HOH A . D 4 HOH 10 1117 10 HOH HOH A . D 4 HOH 11 1118 11 HOH HOH A . D 4 HOH 12 1119 12 HOH HOH A . D 4 HOH 13 1120 13 HOH HOH A . D 4 HOH 14 1121 14 HOH HOH A . D 4 HOH 15 1122 15 HOH HOH A . D 4 HOH 16 1123 16 HOH HOH A . D 4 HOH 17 1124 17 HOH HOH A . D 4 HOH 18 1125 18 HOH HOH A . D 4 HOH 19 1126 19 HOH HOH A . D 4 HOH 20 1127 20 HOH HOH A . D 4 HOH 21 1128 21 HOH HOH A . D 4 HOH 22 1129 22 HOH HOH A . D 4 HOH 23 1130 23 HOH HOH A . D 4 HOH 24 1131 24 HOH HOH A . D 4 HOH 25 1132 25 HOH HOH A . D 4 HOH 26 1133 26 HOH HOH A . D 4 HOH 27 1134 27 HOH HOH A . D 4 HOH 28 1135 28 HOH HOH A . D 4 HOH 29 1136 29 HOH HOH A . D 4 HOH 30 1137 30 HOH HOH A . D 4 HOH 31 1138 31 HOH HOH A . D 4 HOH 32 1139 32 HOH HOH A . D 4 HOH 33 1140 33 HOH HOH A . D 4 HOH 34 1141 34 HOH HOH A . D 4 HOH 35 1142 35 HOH HOH A . D 4 HOH 36 1143 36 HOH HOH A . D 4 HOH 37 1144 37 HOH HOH A . D 4 HOH 38 1145 38 HOH HOH A . D 4 HOH 39 1146 39 HOH HOH A . D 4 HOH 40 1147 40 HOH HOH A . D 4 HOH 41 1148 41 HOH HOH A . D 4 HOH 42 1149 42 HOH HOH A . D 4 HOH 43 1150 43 HOH HOH A . D 4 HOH 44 1151 44 HOH HOH A . D 4 HOH 45 1152 45 HOH HOH A . D 4 HOH 46 1153 46 HOH HOH A . D 4 HOH 47 1154 47 HOH HOH A . D 4 HOH 48 1155 48 HOH HOH A . D 4 HOH 49 1156 49 HOH HOH A . D 4 HOH 50 1157 50 HOH HOH A . D 4 HOH 51 1158 51 HOH HOH A . D 4 HOH 52 1159 52 HOH HOH A . D 4 HOH 53 1160 53 HOH HOH A . D 4 HOH 54 1161 54 HOH HOH A . D 4 HOH 55 1162 55 HOH HOH A . D 4 HOH 56 1163 56 HOH HOH A . D 4 HOH 57 1164 57 HOH HOH A . D 4 HOH 58 1165 58 HOH HOH A . D 4 HOH 59 1166 59 HOH HOH A . D 4 HOH 60 1167 60 HOH HOH A . D 4 HOH 61 1168 61 HOH HOH A . D 4 HOH 62 1169 62 HOH HOH A . D 4 HOH 63 1170 63 HOH HOH A . D 4 HOH 64 1171 64 HOH HOH A . D 4 HOH 65 1172 65 HOH HOH A . D 4 HOH 66 1173 66 HOH HOH A . D 4 HOH 67 1174 67 HOH HOH A . D 4 HOH 68 1175 68 HOH HOH A . D 4 HOH 69 1176 69 HOH HOH A . D 4 HOH 70 1177 70 HOH HOH A . D 4 HOH 71 1178 71 HOH HOH A . D 4 HOH 72 1179 72 HOH HOH A . D 4 HOH 73 1180 73 HOH HOH A . D 4 HOH 74 1181 74 HOH HOH A . D 4 HOH 75 1182 75 HOH HOH A . D 4 HOH 76 1183 76 HOH HOH A . D 4 HOH 77 1184 77 HOH HOH A . D 4 HOH 78 1185 78 HOH HOH A . D 4 HOH 79 1186 79 HOH HOH A . D 4 HOH 80 1187 80 HOH HOH A . D 4 HOH 81 1188 81 HOH HOH A . D 4 HOH 82 1189 82 HOH HOH A . D 4 HOH 83 1190 83 HOH HOH A . D 4 HOH 84 1191 84 HOH HOH A . D 4 HOH 85 1192 85 HOH HOH A . D 4 HOH 86 1193 86 HOH HOH A . D 4 HOH 87 1194 87 HOH HOH A . D 4 HOH 88 1195 88 HOH HOH A . D 4 HOH 89 1196 89 HOH HOH A . D 4 HOH 90 1197 90 HOH HOH A . D 4 HOH 91 1198 91 HOH HOH A . D 4 HOH 92 1199 92 HOH HOH A . D 4 HOH 93 1200 93 HOH HOH A . D 4 HOH 94 1201 94 HOH HOH A . D 4 HOH 95 1202 95 HOH HOH A . D 4 HOH 96 1203 96 HOH HOH A . D 4 HOH 97 1204 97 HOH HOH A . D 4 HOH 98 1205 98 HOH HOH A . D 4 HOH 99 1206 99 HOH HOH A . D 4 HOH 100 1207 100 HOH HOH A . D 4 HOH 101 1208 101 HOH HOH A . D 4 HOH 102 1209 102 HOH HOH A . D 4 HOH 103 1210 103 HOH HOH A . D 4 HOH 104 1211 104 HOH HOH A . D 4 HOH 105 1212 105 HOH HOH A . D 4 HOH 106 1213 106 HOH HOH A . D 4 HOH 107 1214 107 HOH HOH A . D 4 HOH 108 1215 108 HOH HOH A . D 4 HOH 109 1216 109 HOH HOH A . D 4 HOH 110 1217 110 HOH HOH A . D 4 HOH 111 1218 111 HOH HOH A . D 4 HOH 112 1219 112 HOH HOH A . D 4 HOH 113 1220 113 HOH HOH A . D 4 HOH 114 1221 114 HOH HOH A . D 4 HOH 115 1222 115 HOH HOH A . D 4 HOH 116 1223 116 HOH HOH A . D 4 HOH 117 1224 117 HOH HOH A . D 4 HOH 118 1225 118 HOH HOH A . D 4 HOH 119 1226 119 HOH HOH A . D 4 HOH 120 1227 120 HOH HOH A . D 4 HOH 121 1228 121 HOH HOH A . D 4 HOH 122 1229 122 HOH HOH A . D 4 HOH 123 1230 123 HOH HOH A . D 4 HOH 124 1231 124 HOH HOH A . D 4 HOH 125 1232 125 HOH HOH A . D 4 HOH 126 1233 126 HOH HOH A . D 4 HOH 127 1234 127 HOH HOH A . D 4 HOH 128 1235 128 HOH HOH A . D 4 HOH 129 1236 129 HOH HOH A . D 4 HOH 130 1237 130 HOH HOH A . D 4 HOH 131 1238 131 HOH HOH A . D 4 HOH 132 1239 132 HOH HOH A . D 4 HOH 133 1240 133 HOH HOH A . D 4 HOH 134 1241 134 HOH HOH A . D 4 HOH 135 1242 135 HOH HOH A . D 4 HOH 136 1243 136 HOH HOH A . D 4 HOH 137 1244 137 HOH HOH A . D 4 HOH 138 1245 138 HOH HOH A . D 4 HOH 139 1246 139 HOH HOH A . D 4 HOH 140 1247 140 HOH HOH A . D 4 HOH 141 1248 141 HOH HOH A . D 4 HOH 142 1249 142 HOH HOH A . D 4 HOH 143 1250 143 HOH HOH A . D 4 HOH 144 1251 144 HOH HOH A . D 4 HOH 145 1252 145 HOH HOH A . D 4 HOH 146 1253 146 HOH HOH A . D 4 HOH 147 1254 147 HOH HOH A . D 4 HOH 148 1255 148 HOH HOH A . D 4 HOH 149 1256 149 HOH HOH A . D 4 HOH 150 1257 150 HOH HOH A . D 4 HOH 151 1258 151 HOH HOH A . D 4 HOH 152 1259 152 HOH HOH A . D 4 HOH 153 1260 153 HOH HOH A . D 4 HOH 154 1261 154 HOH HOH A . D 4 HOH 155 1262 155 HOH HOH A . D 4 HOH 156 1263 156 HOH HOH A . D 4 HOH 157 1264 157 HOH HOH A . D 4 HOH 158 1265 158 HOH HOH A . D 4 HOH 159 1266 159 HOH HOH A . D 4 HOH 160 1267 160 HOH HOH A . D 4 HOH 161 1268 161 HOH HOH A . D 4 HOH 162 1269 162 HOH HOH A . D 4 HOH 163 1270 163 HOH HOH A . D 4 HOH 164 1271 164 HOH HOH A . D 4 HOH 165 1272 165 HOH HOH A . D 4 HOH 166 1273 166 HOH HOH A . D 4 HOH 167 1274 167 HOH HOH A . D 4 HOH 168 1275 168 HOH HOH A . D 4 HOH 169 1276 169 HOH HOH A . D 4 HOH 170 1277 170 HOH HOH A . D 4 HOH 171 1278 171 HOH HOH A . D 4 HOH 172 1279 172 HOH HOH A . D 4 HOH 173 1280 173 HOH HOH A . D 4 HOH 174 1281 174 HOH HOH A . D 4 HOH 175 1282 175 HOH HOH A . D 4 HOH 176 1283 176 HOH HOH A . D 4 HOH 177 1284 177 HOH HOH A . D 4 HOH 178 1285 178 HOH HOH A . D 4 HOH 179 1286 179 HOH HOH A . D 4 HOH 180 1287 180 HOH HOH A . D 4 HOH 181 1288 181 HOH HOH A . D 4 HOH 182 1289 182 HOH HOH A . D 4 HOH 183 1290 183 HOH HOH A . D 4 HOH 184 1291 184 HOH HOH A . D 4 HOH 185 1292 185 HOH HOH A . D 4 HOH 186 1293 186 HOH HOH A . D 4 HOH 187 1294 187 HOH HOH A . D 4 HOH 188 1295 188 HOH HOH A . D 4 HOH 189 1296 189 HOH HOH A . D 4 HOH 190 1297 190 HOH HOH A . D 4 HOH 191 1298 191 HOH HOH A . D 4 HOH 192 1299 192 HOH HOH A . D 4 HOH 193 1300 193 HOH HOH A . D 4 HOH 194 1301 194 HOH HOH A . D 4 HOH 195 1302 195 HOH HOH A . D 4 HOH 196 1303 196 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MHO _pdbx_struct_mod_residue.label_seq_id 28 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MHO _pdbx_struct_mod_residue.auth_seq_id 28 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details S-OXYMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id ND1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id HIS _pdbx_struct_conn_angle.ptnr1_label_seq_id 53 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 53 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id CU _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id CU _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id CU _pdbx_struct_conn_angle.ptnr2_auth_seq_id 1107 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id ND1 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id HIS _pdbx_struct_conn_angle.ptnr3_label_seq_id 95 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr3_auth_seq_id 95 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 103.3 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_conn_type 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.conn_type_id' 4 3 'Structure model' '_struct_conn.id' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 8 3 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 20 3 'Structure model' '_struct_conn_type.id' 21 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de refinement http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 5 SHELX . ? ? ? ? phasing ? ? ? 6 SHELXL-97 . ? ? ? ? refinement ? ? ? 7 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 LYS _pdbx_validate_rmsd_bond.auth_seq_id_1 27 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MET _pdbx_validate_rmsd_bond.auth_seq_id_2 28 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.481 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation 0.145 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 1 ? ? CG A ASP 1 ? ? OD1 A ASP 1 ? ? 108.80 118.30 -9.50 0.90 N 2 1 CB A ASP 1 ? ? CG A ASP 1 ? ? OD2 A ASP 1 ? ? 127.22 118.30 8.92 0.90 N 3 1 O A LYS 27 ? ? C A LYS 27 ? ? N A MET 28 ? B 110.25 122.70 -12.45 1.60 Y 4 1 C A LYS 27 ? ? N A MET 28 ? B CA A MET 28 ? B 136.70 121.70 15.00 2.50 Y 5 1 NE A ARG 48 ? ? CZ A ARG 48 ? ? NH1 A ARG 48 ? ? 115.62 120.30 -4.68 0.50 N 6 1 NE A ARG 48 ? ? CZ A ARG 48 ? ? NH2 A ARG 48 ? ? 124.77 120.30 4.47 0.50 N 7 1 CB A PHE 97 ? ? CG A PHE 97 ? ? CD1 A PHE 97 ? ? 116.01 120.80 -4.79 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 28 ? B 39.79 42.49 2 1 VAL A 61 ? ? -97.26 -63.19 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 'PHOSPHATE ION' PO4 4 water HOH #