data_2QGG # _entry.id 2QGG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QGG RCSB RCSB043567 WWPDB D_1000043567 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id AsR73 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QGG _pdbx_database_status.recvd_initial_deposition_date 2007-06-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuzin, A.P.' 1 'Su, M.' 2 'Jayaraman, S.' 3 'Wang, D.' 4 'Janjua, H.' 5 'Cunningham, K.' 6 'Ma, L.-C.' 7 'Xiao, R.' 8 'Liu, J.' 9 'Baran, M.C.' 10 'Acton, T.B.' 11 'Rost, B.' 12 'Montelione, G.T.' 13 'Hunt, J.F.' 14 'Tong, L.' 15 'Northeast Structural Genomics Consortium (NESG)' 16 # _citation.id primary _citation.title 'X-Ray structure of the protein Q6F7I0 from Acinetobacter calcoaceticus AmMS 248.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kuzin, A.P.' 1 primary 'Su, M.' 2 primary 'Jayaraman, S.' 3 primary 'Wang, D.' 4 primary 'Janjua, H.' 5 primary 'Cunningham, K.' 6 primary 'Ma, L.-C.' 7 primary 'Xiao, R.' 8 primary 'Liu, J.' 9 primary 'Baran, M.C.' 10 primary 'Acton, T.B.' 11 primary 'Rost, B.' 12 primary 'Montelione, G.T.' 13 primary 'Hunt, J.F.' 14 primary 'Tong, L.' 15 # _cell.entry_id 2QGG _cell.length_a 44.899 _cell.length_b 37.588 _cell.length_c 69.200 _cell.angle_alpha 90.00 _cell.angle_beta 97.23 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QGG _symmetry.space_group_name_H-M 'P 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '16S rRNA-processing protein rimM' 21043.771 1 ? 'F46Y, N74G, N79T, A80G, I85V, G86A, T88N, V91I, T99A, E119D, A147P, V150I, A152S' ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)TPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEP(MSE)SN(MSE)FDYLPWYIETKAGWQTVDVKRWKPHGKGL VVSLKGVSDRTGAESLVASNIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDV(MSE)VVR ATPDSIDSEER(MSE)IPWHKDVVQRVDLEAGRIYVNWGVDY ; _entity_poly.pdbx_seq_one_letter_code_can ;MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTVDVKRWKPHGKGLVVSLKGVSDRTG AESLVASNIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWH KDVVQRVDLEAGRIYVNWGVDY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier AsR73 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 THR n 1 3 PRO n 1 4 THR n 1 5 GLN n 1 6 ASN n 1 7 VAL n 1 8 PRO n 1 9 GLU n 1 10 ASP n 1 11 ARG n 1 12 ILE n 1 13 GLN n 1 14 ILE n 1 15 GLY n 1 16 GLN n 1 17 LEU n 1 18 ARG n 1 19 SER n 1 20 ALA n 1 21 TYR n 1 22 GLY n 1 23 LEU n 1 24 ASN n 1 25 GLY n 1 26 TRP n 1 27 LEU n 1 28 TRP n 1 29 VAL n 1 30 TYR n 1 31 SER n 1 32 ASN n 1 33 THR n 1 34 GLU n 1 35 PRO n 1 36 MSE n 1 37 SER n 1 38 ASN n 1 39 MSE n 1 40 PHE n 1 41 ASP n 1 42 TYR n 1 43 LEU n 1 44 PRO n 1 45 TRP n 1 46 TYR n 1 47 ILE n 1 48 GLU n 1 49 THR n 1 50 LYS n 1 51 ALA n 1 52 GLY n 1 53 TRP n 1 54 GLN n 1 55 THR n 1 56 VAL n 1 57 ASP n 1 58 VAL n 1 59 LYS n 1 60 ARG n 1 61 TRP n 1 62 LYS n 1 63 PRO n 1 64 HIS n 1 65 GLY n 1 66 LYS n 1 67 GLY n 1 68 LEU n 1 69 VAL n 1 70 VAL n 1 71 SER n 1 72 LEU n 1 73 LYS n 1 74 GLY n 1 75 VAL n 1 76 SER n 1 77 ASP n 1 78 ARG n 1 79 THR n 1 80 GLY n 1 81 ALA n 1 82 GLU n 1 83 SER n 1 84 LEU n 1 85 VAL n 1 86 ALA n 1 87 SER n 1 88 ASN n 1 89 ILE n 1 90 TRP n 1 91 ILE n 1 92 ALA n 1 93 LYS n 1 94 SER n 1 95 GLN n 1 96 LEU n 1 97 PRO n 1 98 LYS n 1 99 ALA n 1 100 ASP n 1 101 VAL n 1 102 ASP n 1 103 GLU n 1 104 TYR n 1 105 TYR n 1 106 TRP n 1 107 SER n 1 108 ASP n 1 109 LEU n 1 110 LYS n 1 111 GLY n 1 112 LEU n 1 113 THR n 1 114 VAL n 1 115 LEU n 1 116 GLY n 1 117 LEU n 1 118 ASP n 1 119 ASP n 1 120 GLU n 1 121 GLU n 1 122 GLN n 1 123 GLU n 1 124 VAL n 1 125 ASN n 1 126 LEU n 1 127 GLY n 1 128 GLN n 1 129 ILE n 1 130 HIS n 1 131 GLU n 1 132 LEU n 1 133 PHE n 1 134 GLU n 1 135 THR n 1 136 GLY n 1 137 ALA n 1 138 ASN n 1 139 ASP n 1 140 VAL n 1 141 MSE n 1 142 VAL n 1 143 VAL n 1 144 ARG n 1 145 ALA n 1 146 THR n 1 147 PRO n 1 148 ASP n 1 149 SER n 1 150 ILE n 1 151 ASP n 1 152 SER n 1 153 GLU n 1 154 GLU n 1 155 ARG n 1 156 MSE n 1 157 ILE n 1 158 PRO n 1 159 TRP n 1 160 HIS n 1 161 LYS n 1 162 ASP n 1 163 VAL n 1 164 VAL n 1 165 GLN n 1 166 ARG n 1 167 VAL n 1 168 ASP n 1 169 LEU n 1 170 GLU n 1 171 ALA n 1 172 GLY n 1 173 ARG n 1 174 ILE n 1 175 TYR n 1 176 VAL n 1 177 ASN n 1 178 TRP n 1 179 GLY n 1 180 VAL n 1 181 ASP n 1 182 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Acinetobacter _entity_src_gen.pdbx_gene_src_gene 'rimM, ACIAD3312' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ADP1, AmMS 248' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acinetobacter calcoaceticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 471 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RIMM_ACIAD _struct_ref.pdbx_db_accession Q6F7I0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKGLVVSLKNVSDRNA AESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLGQIHELFETGANDVMVVRATADSVDAEERMIPWH KDVVQRVDLEAGRIYVNWGVDY ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QGG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 182 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6F7I0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 182 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 182 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QGG MSE A 1 ? UNP Q6F7I0 MET 1 'MODIFIED RESIDUE' 1 1 1 2QGG MSE A 36 ? UNP Q6F7I0 MET 36 'MODIFIED RESIDUE' 36 2 1 2QGG MSE A 39 ? UNP Q6F7I0 MET 39 'MODIFIED RESIDUE' 39 3 1 2QGG TYR A 46 ? UNP Q6F7I0 PHE 46 'SEE REMARK 999' 46 4 1 2QGG GLY A 74 ? UNP Q6F7I0 ASN 74 'SEE REMARK 999' 74 5 1 2QGG THR A 79 ? UNP Q6F7I0 ASN 79 'SEE REMARK 999' 79 6 1 2QGG GLY A 80 ? UNP Q6F7I0 ALA 80 'SEE REMARK 999' 80 7 1 2QGG VAL A 85 ? UNP Q6F7I0 ILE 85 'SEE REMARK 999' 85 8 1 2QGG ALA A 86 ? UNP Q6F7I0 GLY 86 'SEE REMARK 999' 86 9 1 2QGG ASN A 88 ? UNP Q6F7I0 THR 88 'SEE REMARK 999' 88 10 1 2QGG ILE A 91 ? UNP Q6F7I0 VAL 91 'SEE REMARK 999' 91 11 1 2QGG ALA A 99 ? UNP Q6F7I0 THR 99 'SEE REMARK 999' 99 12 1 2QGG ASP A 119 ? UNP Q6F7I0 GLU 119 'SEE REMARK 999' 119 13 1 2QGG MSE A 141 ? UNP Q6F7I0 MET 141 'MODIFIED RESIDUE' 141 14 1 2QGG PRO A 147 ? UNP Q6F7I0 ALA 147 'SEE REMARK 999' 147 15 1 2QGG ILE A 150 ? UNP Q6F7I0 VAL 150 'SEE REMARK 999' 150 16 1 2QGG SER A 152 ? UNP Q6F7I0 ALA 152 'SEE REMARK 999' 152 17 1 2QGG MSE A 156 ? UNP Q6F7I0 MET 156 'MODIFIED RESIDUE' 156 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QGG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_percent_sol 55.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '15% PEG 20000, 0.1M Potassium acetate, 0.1M MOPS, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2007-04-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97900 # _reflns.entry_id 2QGG _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.4 _reflns.number_obs 9040 _reflns.number_all ? _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 27.5 _reflns.pdbx_redundancy 13.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 85.7 _reflns_shell.Rmerge_I_obs 0.243 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2QGG _refine.ls_number_reflns_obs 7729 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF 438858.54 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.86 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 84.0 _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.256 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.4 _refine.ls_number_reflns_R_free 421 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 29.2 _refine.aniso_B[1][1] 11.05 _refine.aniso_B[2][2] -4.68 _refine.aniso_B[3][3] -6.37 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -3.96 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.306619 _refine.solvent_model_param_bsol 23.779 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2QGG _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.28 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.47 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1417 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1477 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 19.86 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.71 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.66 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.92 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.14 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.20 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 845 _refine_ls_shell.R_factor_R_work 0.272 _refine_ls_shell.percent_reflns_obs 58.6 _refine_ls_shell.R_factor_R_free 0.362 _refine_ls_shell.R_factor_R_free_error 0.054 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2QGG _struct.title ;X-Ray structure of the protein Q6F7I0 from Acinetobacter calcoaceticus AmMS 248. Northeast Structural Genomics Consortium target AsR73. ; _struct.pdbx_descriptor '16S rRNA-processing protein rimM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QGG _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;NESG, AsR73, Acinetobacter calcoaceticus, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 35 ? TYR A 42 ? PRO A 35 TYR A 42 5 ? 8 HELX_P HELX_P2 2 ASP A 77 ? SER A 83 ? ASP A 77 SER A 83 1 ? 7 HELX_P HELX_P3 3 ALA A 99 ? TYR A 104 ? ALA A 99 TYR A 104 1 ? 6 HELX_P HELX_P4 4 TYR A 105 ? LYS A 110 ? TYR A 105 LYS A 110 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A THR 146 O ? ? ? 1_555 B K . K ? ? A THR 146 A K 201 1_555 ? ? ? ? ? ? ? 2.615 ? metalc2 metalc ? ? A SER 149 O ? ? ? 1_555 B K . K ? ? A SER 149 A K 201 1_555 ? ? ? ? ? ? ? 2.991 ? metalc3 metalc ? ? A ASP 151 O ? ? ? 1_555 B K . K ? ? A ASP 151 A K 201 1_555 ? ? ? ? ? ? ? 2.801 ? covale1 covale ? ? A PRO 35 C ? ? ? 1_555 A MSE 36 N ? ? A PRO 35 A MSE 36 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 36 C ? ? ? 1_555 A SER 37 N ? ? A MSE 36 A SER 37 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A ASN 38 C ? ? ? 1_555 A MSE 39 N ? ? A ASN 38 A MSE 39 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 39 C ? ? ? 1_555 A PHE 40 N ? ? A MSE 39 A PHE 40 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A VAL 140 C ? ? ? 1_555 A MSE 141 N ? ? A VAL 140 A MSE 141 1_555 ? ? ? ? ? ? ? 1.323 ? covale6 covale ? ? A MSE 141 C ? ? ? 1_555 A VAL 142 N ? ? A MSE 141 A VAL 142 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A ARG 155 C ? ? ? 1_555 A MSE 156 N ? ? A ARG 155 A MSE 156 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? A MSE 156 C ? ? ? 1_555 A ILE 157 N ? ? A MSE 156 A ILE 157 1_555 ? ? ? ? ? ? ? 1.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 34 A . ? GLU 34 A PRO 35 A ? PRO 35 A 1 -0.03 2 LEU 43 A . ? LEU 43 A PRO 44 A ? PRO 44 A 1 -0.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 52 ? VAL A 56 ? GLY A 52 VAL A 56 A 2 TRP A 45 ? THR A 49 ? TRP A 45 THR A 49 A 3 ASN A 88 ? ALA A 92 ? ASN A 88 ALA A 92 A 4 ARG A 11 ? TYR A 21 ? ARG A 11 TYR A 21 A 5 TRP A 26 ? SER A 31 ? TRP A 26 SER A 31 A 6 GLY A 67 ? LEU A 72 ? GLY A 67 LEU A 72 A 7 VAL A 58 ? HIS A 64 ? VAL A 58 HIS A 64 B 1 ARG A 155 ? PRO A 158 ? ARG A 155 PRO A 158 B 2 ASP A 139 ? ARG A 144 ? ASP A 139 ARG A 144 B 3 GLU A 123 ? GLU A 134 ? GLU A 123 GLU A 134 B 4 THR A 113 ? LEU A 117 ? THR A 113 LEU A 117 B 5 ARG A 173 ? VAL A 176 ? ARG A 173 VAL A 176 B 6 VAL A 164 ? ASP A 168 ? VAL A 164 ASP A 168 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 56 ? O VAL A 56 N TRP A 45 ? N TRP A 45 A 2 3 N TYR A 46 ? N TYR A 46 O TRP A 90 ? O TRP A 90 A 3 4 O ILE A 89 ? O ILE A 89 N GLY A 15 ? N GLY A 15 A 4 5 N SER A 19 ? N SER A 19 O TRP A 28 ? O TRP A 28 A 5 6 N LEU A 27 ? N LEU A 27 O VAL A 70 ? O VAL A 70 A 6 7 O SER A 71 ? O SER A 71 N ARG A 60 ? N ARG A 60 B 1 2 O ILE A 157 ? O ILE A 157 N MSE A 141 ? N MSE A 141 B 2 3 O VAL A 142 ? O VAL A 142 N GLU A 131 ? N GLU A 131 B 3 4 O GLY A 127 ? O GLY A 127 N VAL A 114 ? N VAL A 114 B 4 5 N LEU A 115 ? N LEU A 115 O ILE A 174 ? O ILE A 174 B 5 6 O ARG A 173 ? O ARG A 173 N ASP A 168 ? N ASP A 168 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE K A 201' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE UNL A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 THR A 146 ? THR A 146 . ? 1_555 ? 2 AC1 3 SER A 149 ? SER A 149 . ? 1_555 ? 3 AC1 3 ASP A 151 ? ASP A 151 . ? 1_555 ? 4 AC2 5 TYR A 105 ? TYR A 105 . ? 1_555 ? 5 AC2 5 TRP A 106 ? TRP A 106 . ? 1_555 ? 6 AC2 5 GLU A 131 ? GLU A 131 . ? 1_555 ? 7 AC2 5 LEU A 132 ? LEU A 132 . ? 1_555 ? 8 AC2 5 GLU A 134 ? GLU A 134 . ? 1_555 ? # _database_PDB_matrix.entry_id 2QGG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QGG _atom_sites.fract_transf_matrix[1][1] 0.022272 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002825 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026604 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014567 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 GLN 5 5 ? ? ? A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 MSE 36 36 36 MSE MSE A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 MSE 39 39 39 MSE MSE A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 TRP 61 61 61 TRP TRP A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 TRP 90 90 90 TRP TRP A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 TRP 106 106 106 TRP TRP A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 GLN 122 122 122 GLN GLN A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 ASN 125 125 125 ASN ASN A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 HIS 130 130 130 HIS HIS A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 MSE 141 141 141 MSE MSE A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 PRO 147 147 147 PRO PRO A . n A 1 148 ASP 148 148 148 ASP ASP A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 GLU 153 153 153 GLU GLU A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 MSE 156 156 156 MSE MSE A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 TRP 159 159 159 TRP TRP A . n A 1 160 HIS 160 160 160 HIS HIS A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 GLN 165 165 165 GLN GLN A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 ALA 171 171 171 ALA ALA A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 ILE 174 174 174 ILE ILE A . n A 1 175 TYR 175 175 175 TYR TYR A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 ASN 177 177 177 ASN ASN A . n A 1 178 TRP 178 178 178 TRP TRP A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 TYR 182 182 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 201 201 K K A . C 3 UNL 1 202 1 UNL UNL A . D 4 HOH 1 203 8 HOH HOH A . D 4 HOH 2 204 9 HOH HOH A . D 4 HOH 3 205 10 HOH HOH A . D 4 HOH 4 206 11 HOH HOH A . D 4 HOH 5 207 12 HOH HOH A . D 4 HOH 6 208 13 HOH HOH A . D 4 HOH 7 209 14 HOH HOH A . D 4 HOH 8 210 15 HOH HOH A . D 4 HOH 9 211 16 HOH HOH A . D 4 HOH 10 212 17 HOH HOH A . D 4 HOH 11 213 18 HOH HOH A . D 4 HOH 12 214 19 HOH HOH A . D 4 HOH 13 215 21 HOH HOH A . D 4 HOH 14 216 22 HOH HOH A . D 4 HOH 15 217 23 HOH HOH A . D 4 HOH 16 218 24 HOH HOH A . D 4 HOH 17 219 25 HOH HOH A . D 4 HOH 18 220 26 HOH HOH A . D 4 HOH 19 221 27 HOH HOH A . D 4 HOH 20 222 28 HOH HOH A . D 4 HOH 21 223 29 HOH HOH A . D 4 HOH 22 224 30 HOH HOH A . D 4 HOH 23 225 31 HOH HOH A . D 4 HOH 24 226 32 HOH HOH A . D 4 HOH 25 227 33 HOH HOH A . D 4 HOH 26 228 34 HOH HOH A . D 4 HOH 27 229 35 HOH HOH A . D 4 HOH 28 230 36 HOH HOH A . D 4 HOH 29 231 37 HOH HOH A . D 4 HOH 30 232 38 HOH HOH A . D 4 HOH 31 233 39 HOH HOH A . D 4 HOH 32 234 40 HOH HOH A . D 4 HOH 33 235 41 HOH HOH A . D 4 HOH 34 236 42 HOH HOH A . D 4 HOH 35 237 43 HOH HOH A . D 4 HOH 36 238 44 HOH HOH A . D 4 HOH 37 239 45 HOH HOH A . D 4 HOH 38 240 46 HOH HOH A . D 4 HOH 39 241 47 HOH HOH A . D 4 HOH 40 242 49 HOH HOH A . D 4 HOH 41 243 50 HOH HOH A . D 4 HOH 42 244 51 HOH HOH A . D 4 HOH 43 245 52 HOH HOH A . D 4 HOH 44 246 53 HOH HOH A . D 4 HOH 45 247 54 HOH HOH A . D 4 HOH 46 248 55 HOH HOH A . D 4 HOH 47 249 56 HOH HOH A . D 4 HOH 48 250 57 HOH HOH A . D 4 HOH 49 251 59 HOH HOH A . D 4 HOH 50 252 61 HOH HOH A . D 4 HOH 51 253 62 HOH HOH A . D 4 HOH 52 254 64 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 36 A MSE 36 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 39 ? MET SELENOMETHIONINE 3 A MSE 141 A MSE 141 ? MET SELENOMETHIONINE 4 A MSE 156 A MSE 156 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A THR 146 ? A THR 146 ? 1_555 K ? B K . ? A K 201 ? 1_555 O ? A SER 149 ? A SER 149 ? 1_555 97.3 ? 2 O ? A THR 146 ? A THR 146 ? 1_555 K ? B K . ? A K 201 ? 1_555 O ? A ASP 151 ? A ASP 151 ? 1_555 114.0 ? 3 O ? A SER 149 ? A SER 149 ? 1_555 K ? B K . ? A K 201 ? 1_555 O ? A ASP 151 ? A ASP 151 ? 1_555 102.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-17 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.name' 2 4 'Structure model' '_citation_author.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 ADSC 'data collection' Quantum ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 600 ; HETEROGEN THE ATOMS OF UNKNOWN LIGAND HAVE BEEN REFINED AS WATER OXYGEN ATOMS. ; 999 ; SEQUENCE AUTHORS STATE THAT THE SEQUENCE DIFFERENCE IS DUE TO ANNOTATION ERROR OF THE ENTRY Q6F7I0. THE AUTHOR'S SEQUENCE CONTAINS 13 NATURAL (NOT ENGINEERED) REPLACEMENTS FROM ANNOTATED Q6F7I0. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 18 ? ? -99.51 -140.12 2 1 LYS A 110 ? ? -38.21 123.17 3 1 SER A 149 ? ? -43.50 158.03 4 1 ASP A 151 ? ? -147.86 -159.56 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A GLN 5 ? A GLN 5 6 1 Y 1 A TYR 182 ? A TYR 182 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'UNKNOWN LIGAND' UNL 4 water HOH #