HEADER METAL BINDING PROTEIN 30-JUN-07 2QH7 TITLE MITONEET IS A UNIQUELY FOLDED 2FE-2S OUTER MITOCHONDRIAL MEMBRANE TITLE 2 PROTEIN STABILIZED BY PIOGLITAZONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER CDGSH-TYPE DOMAIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: WATER-SOLULE DOMAIN OF MITONEET-RESIDUES 33-108; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZCD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MITONEET, 2FE-2S PROTEIN, OUTER MITOCHRODRIAL MEMBRANE PROTEIN, KEYWDS 2 PIOGLITAZONE BINDING, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.L.PADDOCK,S.E.WILEY,H.L.AXELROD,A.E.COHEN,M.ROY,E.C.ABRESCH, AUTHOR 2 D.CAPRARO,A.N.MURPHY,R.NECHUSHTAI,J.E.DIXON,P.A.JENNINGS REVDAT 6 21-FEB-24 2QH7 1 REMARK REVDAT 5 24-JAN-18 2QH7 1 AUTHOR REVDAT 4 13-JUL-11 2QH7 1 VERSN REVDAT 3 24-FEB-09 2QH7 1 VERSN REVDAT 2 16-OCT-07 2QH7 1 JRNL REVDAT 1 21-AUG-07 2QH7 0 JRNL AUTH M.L.PADDOCK,S.E.WILEY,H.L.AXELROD,A.E.COHEN,M.ROY, JRNL AUTH 2 E.C.ABRESCH,D.CAPRARO,A.N.MURPHY,R.NECHUSHTAI,J.E.DIXON, JRNL AUTH 3 P.A.JENNINGS JRNL TITL MITONEET IS A UNIQUELY FOLDED 2FE 2S OUTER MITOCHONDRIAL JRNL TITL 2 MEMBRANE PROTEIN STABILIZED BY PIOGLITAZONE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 14342 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17766440 JRNL DOI 10.1073/PNAS.0707189104 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 21479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1121 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.564 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1101 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 958 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1485 ; 1.717 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2254 ; 0.920 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 139 ; 6.444 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;20.957 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 198 ;11.990 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 5.394 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 153 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1227 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 211 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 175 ; 0.182 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 936 ; 0.172 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 503 ; 0.169 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 600 ; 0.083 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.170 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.116 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 20 ; 0.204 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.135 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 726 ; 1.843 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 275 ; 0.528 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1076 ; 2.309 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 472 ; 3.745 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 401 ; 4.654 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 42 A 106 6 REMARK 3 1 B 43 B 107 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 917 ; 0.250 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 917 ; 1.510 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9394 45.1101 7.8926 REMARK 3 T TENSOR REMARK 3 T11: -0.1435 T22: -0.2042 REMARK 3 T33: -0.1380 T12: 0.0307 REMARK 3 T13: 0.0168 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.9164 L22: 2.0161 REMARK 3 L33: 7.0724 L12: -0.2153 REMARK 3 L13: -1.4870 L23: -0.2902 REMARK 3 S TENSOR REMARK 3 S11: -0.1360 S12: 0.0005 S13: -0.1437 REMARK 3 S21: -0.0486 S22: -0.1035 S23: -0.1278 REMARK 3 S31: 0.4781 S32: 0.2602 S33: 0.2395 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8026 54.5578 5.6189 REMARK 3 T TENSOR REMARK 3 T11: -0.1802 T22: -0.2361 REMARK 3 T33: -0.1209 T12: 0.0481 REMARK 3 T13: -0.0158 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 3.2473 L22: 1.9235 REMARK 3 L33: 8.1164 L12: 0.1712 REMARK 3 L13: -1.9405 L23: 0.4046 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: 0.0856 S13: 0.2158 REMARK 3 S21: -0.0118 S22: -0.0608 S23: -0.0868 REMARK 3 S31: -0.4634 S32: 0.1792 S33: 0.0967 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3.ELECTRON DENSITIES CORRESPONDING TO RESIDUES 33-41 AND 107-108 REMARK 3 ON THE A SUBUNIT AND RESIDUES 33-42 AND 108 ON THE REMARK 3 B SUBUNIT WERE DISORDERED AND THESE RESIDUES WERE NOT MODELED. REMARK 3 4.A 2FE-2S CLUSTER (FES) WAS MODELED INTO EACH SUBUNIT IN THE REMARK 3 ASYMMETRIC UNIT. THE PRESENCE OF THE 2FE-2S CLUSTER WAS REMARK 3 CORRBORATED BY REMARK 3 ANOMALOUS DIFFERENCE MAPS. THE PROTEIN LIGANDS TO THE FE ATOMS REMARK 3 IN THE 2FE-2S CLUSTERS ARE CYS 72, CYS 74, CYS 83, AND HIS 87. REMARK 4 REMARK 4 2QH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-07; 10-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794; 1.7374, 1.3624, 1.7418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; MARMOSAIC REMARK 200 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21479 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.75400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.12, RESOLVE 2.12 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.40300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.50300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.81050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.50300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.40300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.81050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 33 REMARK 465 PHE A 34 REMARK 465 TYR A 35 REMARK 465 VAL A 36 REMARK 465 LYS A 37 REMARK 465 ASP A 38 REMARK 465 HIS A 39 REMARK 465 ARG A 40 REMARK 465 ASN A 41 REMARK 465 GLU A 107 REMARK 465 THR A 108 REMARK 465 ARG B 33 REMARK 465 PHE B 34 REMARK 465 TYR B 35 REMARK 465 VAL B 36 REMARK 465 LYS B 37 REMARK 465 ASP B 38 REMARK 465 HIS B 39 REMARK 465 ARG B 40 REMARK 465 ASN B 41 REMARK 465 LYS B 42 REMARK 465 THR B 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CB CG CD CE NZ REMARK 470 LYS A 79 CE NZ REMARK 470 LYS A 89 CE NZ REMARK 470 LYS A 106 NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 LYS B 105 CE NZ REMARK 470 LYS B 106 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 52 O HOH A 557 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 73 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 50 61.29 33.42 REMARK 500 GLN A 50 58.97 35.96 REMARK 500 ASN A 97 35.87 -141.55 REMARK 500 GLN B 50 60.50 32.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 500 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 72 SG REMARK 620 2 FES A 500 S1 110.3 REMARK 620 3 FES A 500 S2 117.2 104.1 REMARK 620 4 CYS A 74 SG 102.9 108.3 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 500 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 83 SG REMARK 620 2 FES A 500 S1 109.5 REMARK 620 3 FES A 500 S2 125.8 101.7 REMARK 620 4 HIS A 87 ND1 99.6 117.3 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 500 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 72 SG REMARK 620 2 FES B 500 S1 111.1 REMARK 620 3 FES B 500 S2 118.1 102.4 REMARK 620 4 CYS B 74 SG 101.9 108.9 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 500 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 83 SG REMARK 620 2 FES B 500 S1 107.8 REMARK 620 3 FES B 500 S2 129.4 100.5 REMARK 620 4 HIS B 87 ND1 98.8 118.3 103.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 500 DBREF 2QH7 A 33 108 UNP Q1X902 Q1X902_HUMAN 33 108 DBREF 2QH7 B 33 108 UNP Q1X902 Q1X902_HUMAN 33 108 SEQRES 1 A 76 ARG PHE TYR VAL LYS ASP HIS ARG ASN LYS ALA MET ILE SEQRES 2 A 76 ASN LEU HIS ILE GLN LYS ASP ASN PRO LYS ILE VAL HIS SEQRES 3 A 76 ALA PHE ASP MET GLU ASP LEU GLY ASP LYS ALA VAL TYR SEQRES 4 A 76 CYS ARG CYS TRP ARG SER LYS LYS PHE PRO PHE CYS ASP SEQRES 5 A 76 GLY ALA HIS THR LYS HIS ASN GLU GLU THR GLY ASP ASN SEQRES 6 A 76 VAL GLY PRO LEU ILE ILE LYS LYS LYS GLU THR SEQRES 1 B 76 ARG PHE TYR VAL LYS ASP HIS ARG ASN LYS ALA MET ILE SEQRES 2 B 76 ASN LEU HIS ILE GLN LYS ASP ASN PRO LYS ILE VAL HIS SEQRES 3 B 76 ALA PHE ASP MET GLU ASP LEU GLY ASP LYS ALA VAL TYR SEQRES 4 B 76 CYS ARG CYS TRP ARG SER LYS LYS PHE PRO PHE CYS ASP SEQRES 5 B 76 GLY ALA HIS THR LYS HIS ASN GLU GLU THR GLY ASP ASN SEQRES 6 B 76 VAL GLY PRO LEU ILE ILE LYS LYS LYS GLU THR HET FES A 500 4 HET FES B 500 4 HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 3 FES 2(FE2 S2) FORMUL 5 HOH *128(H2 O) HELIX 1 1 GLU A 63 LEU A 65 5 3 HELIX 2 2 GLY A 85 GLY A 95 1 11 HELIX 3 3 GLU B 63 LEU B 65 5 3 HELIX 4 4 GLY B 85 GLY B 95 1 11 SHEET 1 A 3 ILE A 56 ASP A 61 0 SHEET 2 A 3 VAL B 98 LYS B 104 1 O ILE B 102 N HIS A 58 SHEET 3 A 3 LYS B 68 TYR B 71 -1 N TYR B 71 O LEU B 101 SHEET 1 B 3 LYS A 68 TYR A 71 0 SHEET 2 B 3 VAL A 98 LYS A 104 -1 O LEU A 101 N TYR A 71 SHEET 3 B 3 ILE B 56 ASP B 61 1 O HIS B 58 N ILE A 102 LINK SG CYS A 72 FE1 FES A 500 1555 1555 2.33 LINK SG CYS A 74 FE1 FES A 500 1555 1555 2.15 LINK SG CYS A 83 FE2 FES A 500 1555 1555 2.32 LINK ND1 HIS A 87 FE2 FES A 500 1555 1555 2.19 LINK SG CYS B 72 FE1 FES B 500 1555 1555 2.31 LINK SG CYS B 74 FE1 FES B 500 1555 1555 2.24 LINK SG CYS B 83 FE2 FES B 500 1555 1555 2.30 LINK ND1 HIS B 87 FE2 FES B 500 1555 1555 2.14 CISPEP 1 PHE A 80 PRO A 81 0 11.46 CISPEP 2 PHE B 80 PRO B 81 0 12.29 SITE 1 AC1 10 CYS A 72 ARG A 73 CYS A 74 SER A 77 SITE 2 AC1 10 CYS A 83 ASP A 84 GLY A 85 ALA A 86 SITE 3 AC1 10 HIS A 87 PRO A 100 SITE 1 AC2 7 CYS B 72 ARG B 73 CYS B 74 CYS B 83 SITE 2 AC2 7 ASP B 84 ALA B 86 HIS B 87 CRYST1 46.806 49.621 59.006 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016947 0.00000