data_2QKH # _entry.id 2QKH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QKH RCSB RCSB043711 WWPDB D_1000043711 # _pdbx_database_status.entry_id 2QKH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Parthier, C.' 1 'Kleinschmidt, M.' 2 'Neumann, P.' 3 'Rudolph, R.' 4 'Manhart, S.' 5 'Schlenzig, D.' 6 'Fanghanel, J.' 7 'Rahfeld, J.-U.' 8 'Demuth, H.-U.' 9 'Stubbs, M.T.' 10 # _citation.id primary _citation.title 'Crystal structure of the incretin-bound extracellular domain of a G protein-coupled receptor' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 104 _citation.page_first 13942 _citation.page_last 13947 _citation.year 2007 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17715056 _citation.pdbx_database_id_DOI 10.1073/pnas.0706404104 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parthier, C.' 1 ? primary 'Kleinschmidt, M.' 2 ? primary 'Neumann, P.' 3 ? primary 'Rudolph, R.' 4 ? primary 'Manhart, S.' 5 ? primary 'Schlenzig, D.' 6 ? primary 'Fanghanel, J.' 7 ? primary 'Rahfeld, J.-U.' 8 ? primary 'Demuth, H.-U.' 9 ? primary 'Stubbs, M.T.' 10 ? # _cell.entry_id 2QKH _cell.length_a 84.007 _cell.length_b 84.007 _cell.length_c 180.947 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QKH _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Glucose-dependent insulinotropic polypeptide' 4990.586 1 ? ? 'Sequence database residues 52-93' ? 2 polymer man 'Glucose-dependent insulinotropic polypeptide receptor' 15390.996 1 ? ? 'Extracellular domain, residues 29-138' ? 3 branched man ;Cyclic 2,3-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-2,6-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-3-O-methyl-alpha-D-glucopyranose ; 1251.185 1 ? ? ? ? 4 non-polymer syn 'D(-)-TARTARIC ACID' 150.087 1 ? ? ? ? 5 water nat water 18.015 133 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Gastric inhibitory polypeptide, GIP' 2 'Gastric inhibitory polypeptide receptor, GIP-R' 3 methyl-beta-cyclodextrin # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no YAEGTFISDYSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQ YAEGTFISDYSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQ B ? 2 'polypeptide(L)' no no ;GSSHHHHHHSSGLVPRGSHMETGSKGQTAGELYQRWERYRRECQETLAAAEPPSGLACNGSFDMYVCWDYAAPNATARAS CPWYLPWHHHVAAGFVLRQCGSDGQWGLWRDHTQCENPEKNEAFLDQRLILERLQ ; ;GSSHHHHHHSSGLVPRGSHMETGSKGQTAGELYQRWERYRRECQETLAAAEPPSGLACNGSFDMYVCWDYAAPNATARAS CPWYLPWHHHVAAGFVLRQCGSDGQWGLWRDHTQCENPEKNEAFLDQRLILERLQ ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 ALA n 1 3 GLU n 1 4 GLY n 1 5 THR n 1 6 PHE n 1 7 ILE n 1 8 SER n 1 9 ASP n 1 10 TYR n 1 11 SER n 1 12 ILE n 1 13 ALA n 1 14 MET n 1 15 ASP n 1 16 LYS n 1 17 ILE n 1 18 HIS n 1 19 GLN n 1 20 GLN n 1 21 ASP n 1 22 PHE n 1 23 VAL n 1 24 ASN n 1 25 TRP n 1 26 LEU n 1 27 LEU n 1 28 ALA n 1 29 GLN n 1 30 LYS n 1 31 GLY n 1 32 LYS n 1 33 LYS n 1 34 ASN n 1 35 ASP n 1 36 TRP n 1 37 LYS n 1 38 HIS n 1 39 ASN n 1 40 ILE n 1 41 THR n 1 42 GLN n 2 1 GLY n 2 2 SER n 2 3 SER n 2 4 HIS n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 HIS n 2 9 HIS n 2 10 SER n 2 11 SER n 2 12 GLY n 2 13 LEU n 2 14 VAL n 2 15 PRO n 2 16 ARG n 2 17 GLY n 2 18 SER n 2 19 HIS n 2 20 MET n 2 21 GLU n 2 22 THR n 2 23 GLY n 2 24 SER n 2 25 LYS n 2 26 GLY n 2 27 GLN n 2 28 THR n 2 29 ALA n 2 30 GLY n 2 31 GLU n 2 32 LEU n 2 33 TYR n 2 34 GLN n 2 35 ARG n 2 36 TRP n 2 37 GLU n 2 38 ARG n 2 39 TYR n 2 40 ARG n 2 41 ARG n 2 42 GLU n 2 43 CYS n 2 44 GLN n 2 45 GLU n 2 46 THR n 2 47 LEU n 2 48 ALA n 2 49 ALA n 2 50 ALA n 2 51 GLU n 2 52 PRO n 2 53 PRO n 2 54 SER n 2 55 GLY n 2 56 LEU n 2 57 ALA n 2 58 CYS n 2 59 ASN n 2 60 GLY n 2 61 SER n 2 62 PHE n 2 63 ASP n 2 64 MET n 2 65 TYR n 2 66 VAL n 2 67 CYS n 2 68 TRP n 2 69 ASP n 2 70 TYR n 2 71 ALA n 2 72 ALA n 2 73 PRO n 2 74 ASN n 2 75 ALA n 2 76 THR n 2 77 ALA n 2 78 ARG n 2 79 ALA n 2 80 SER n 2 81 CYS n 2 82 PRO n 2 83 TRP n 2 84 TYR n 2 85 LEU n 2 86 PRO n 2 87 TRP n 2 88 HIS n 2 89 HIS n 2 90 HIS n 2 91 VAL n 2 92 ALA n 2 93 ALA n 2 94 GLY n 2 95 PHE n 2 96 VAL n 2 97 LEU n 2 98 ARG n 2 99 GLN n 2 100 CYS n 2 101 GLY n 2 102 SER n 2 103 ASP n 2 104 GLY n 2 105 GLN n 2 106 TRP n 2 107 GLY n 2 108 LEU n 2 109 TRP n 2 110 ARG n 2 111 ASP n 2 112 HIS n 2 113 THR n 2 114 GLN n 2 115 CYS n 2 116 GLU n 2 117 ASN n 2 118 PRO n 2 119 GLU n 2 120 LYS n 2 121 ASN n 2 122 GLU n 2 123 ALA n 2 124 PHE n 2 125 LEU n 2 126 ASP n 2 127 GLN n 2 128 ARG n 2 129 LEU n 2 130 ILE n 2 131 LEU n 2 132 GLU n 2 133 ARG n 2 134 LEU n 2 135 GLN n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene GIPR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The peptide is naturally found in Homo Sapiens (human).' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GIP_HUMAN P09681 1 YAEGTFISDYSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQ 52 ? 2 UNP GIPR_HUMAN P48546 2 ;ETGSKGQTAGELYQRWERYRRECQETLAAAEPPSGLACNGSFDMYVCWDYAAPNATARASCPWYLPWHHHVAAGFVLRQC GSDGQWGLWRDHTQCENPEKNEAFLDQRLILERLQ ; 24 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QKH B 1 ? 42 ? P09681 52 ? 93 ? 1 42 2 2 2QKH A 21 ? 135 ? P48546 24 ? 138 ? 24 138 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 2QKH GLY A 1 ? UNP P48546 ? ? 'expression tag' 4 1 2 2QKH SER A 2 ? UNP P48546 ? ? 'expression tag' 5 2 2 2QKH SER A 3 ? UNP P48546 ? ? 'expression tag' 6 3 2 2QKH HIS A 4 ? UNP P48546 ? ? 'expression tag' 7 4 2 2QKH HIS A 5 ? UNP P48546 ? ? 'expression tag' 8 5 2 2QKH HIS A 6 ? UNP P48546 ? ? 'expression tag' 9 6 2 2QKH HIS A 7 ? UNP P48546 ? ? 'expression tag' 10 7 2 2QKH HIS A 8 ? UNP P48546 ? ? 'expression tag' 11 8 2 2QKH HIS A 9 ? UNP P48546 ? ? 'expression tag' 12 9 2 2QKH SER A 10 ? UNP P48546 ? ? 'expression tag' 13 10 2 2QKH SER A 11 ? UNP P48546 ? ? 'expression tag' 14 11 2 2QKH GLY A 12 ? UNP P48546 ? ? 'expression tag' 15 12 2 2QKH LEU A 13 ? UNP P48546 ? ? 'expression tag' 16 13 2 2QKH VAL A 14 ? UNP P48546 ? ? 'expression tag' 17 14 2 2QKH PRO A 15 ? UNP P48546 ? ? 'expression tag' 18 15 2 2QKH ARG A 16 ? UNP P48546 ? ? 'expression tag' 19 16 2 2QKH GLY A 17 ? UNP P48546 ? ? 'expression tag' 20 17 2 2QKH SER A 18 ? UNP P48546 ? ? 'expression tag' 21 18 2 2QKH HIS A 19 ? UNP P48546 ? ? 'expression tag' 22 19 2 2QKH MET A 20 ? UNP P48546 ? ? 'expression tag' 23 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TAR non-polymer . 'D(-)-TARTARIC ACID' ? 'C4 H6 O6' 150.087 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZB0 'D-saccharide, alpha linking' n 2,3-di-O-methyl-alpha-D-glucopyranose ? 'C8 H16 O6' 208.209 ZB1 'D-saccharide, alpha linking' n 3-O-methyl-alpha-D-glucopyranose ? 'C7 H14 O6' 194.182 ZB2 'D-saccharide, alpha linking' n 2-O-methyl-alpha-D-glucopyranose ? 'C7 H14 O6' 194.182 ZB3 'D-saccharide, alpha linking' n 2,6-di-O-methyl-alpha-D-glucopyranose ? 'C8 H16 O6' 208.209 # _exptl.crystals_number 1 _exptl.entry_id 2QKH _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 59.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100 mM HEPES, 1 M potassium-sodium tartrate, 9% Methyl-beta-cyclodextrin, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 288K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-08-28 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2QKH _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 50.000 _reflns.number_obs 19647 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_netI_over_sigmaI 12.300 _reflns.pdbx_chi_squared 1.024 _reflns.pdbx_redundancy 50.100 _reflns.percent_possible_obs 99.8 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 3 _reflns.number_all 19684 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 32.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.538 _reflns_shell.meanI_over_sigI_obs 8.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.009 _reflns_shell.pdbx_redundancy 48.90 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1942 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2QKH _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 42.00 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.810 _refine.ls_number_reflns_obs 18643 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_obs 0.167 _refine.ls_R_factor_R_work 0.166 _refine.ls_R_factor_R_free 0.183 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1004 _refine.B_iso_mean 38.771 _refine.aniso_B[1][1] 1.070 _refine.aniso_B[2][2] 1.070 _refine.aniso_B[3][3] -1.610 _refine.aniso_B[1][2] 0.540 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.956 _refine.pdbx_overall_ESU_R 0.127 _refine.pdbx_overall_ESU_R_Free 0.092 _refine.overall_SU_ML 0.057 _refine.overall_SU_B 3.667 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I 0.00 _refine.ls_number_reflns_all 19684 _refine.ls_R_factor_all 0.18329 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model isotropic _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2QKH _refine_analyze.Luzzati_coordinate_error_obs 0.127 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.092 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1028 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.number_atoms_solvent 138 _refine_hist.number_atoms_total 1250 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 42.00 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1162 0.010 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1593 1.175 1.989 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 128 5.113 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 59 28.158 23.390 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 154 11.101 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 15.139 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 173 0.080 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 868 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 529 0.218 0.300 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 837 0.320 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 189 0.202 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 42 0.422 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 23 0.316 0.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 646 1.710 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 999 2.530 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 606 1.746 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 592 2.634 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.951 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.650 _refine_ls_shell.number_reflns_R_work 1349 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.179 _refine_ls_shell.R_factor_R_free 0.225 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1411 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QKH _struct.title 'Crystal structure of the extracellular domain of human GIP receptor in complex with the hormone GIP' _struct.pdbx_descriptor 'Glucose-dependent insulinotropic polypeptide, Glucose-dependent insulinotropic polypeptide receptor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QKH _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/HORMONE' _struct_keywords.text ;GPCR, incretin, hormone-GPCR complex, extracellular domain, ligand binding domain, ECD, glugacon receptor family, hormone recognition fold, diabetes, helix formation, Cleavage on pair of basic residues, Polymorphism, Alternative splicing, G-protein coupled receptor, Glycoprotein, Membrane, Transducer, Transmembrane, SIGNALING PROTEIN-HORMONE COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? GLN A 29 ? THR B 5 GLN B 29 1 ? 25 HELX_P HELX_P2 2 THR B 28 ? ALA B 50 ? THR A 31 ALA A 53 1 ? 23 HELX_P HELX_P3 3 TRP B 87 ? ALA B 92 ? TRP A 90 ALA A 95 1 ? 6 HELX_P HELX_P4 4 HIS B 112 ? GLU B 116 ? HIS A 115 GLU A 119 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? B CYS 43 SG ? ? ? 1_555 B CYS 67 SG ? ? A CYS 46 A CYS 70 1_555 ? ? ? ? ? ? ? 2.118 ? ? disulf2 disulf ? ? B CYS 58 SG ? ? ? 1_555 B CYS 100 SG ? ? A CYS 61 A CYS 103 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? B CYS 81 SG ? ? ? 1_555 B CYS 115 SG ? ? A CYS 84 A CYS 118 1_555 ? ? ? ? ? ? ? 2.062 ? ? covale1 covale both ? C ZB1 . O4 ? ? ? 1_555 C GLC . C1 ? ? C ZB1 1 C GLC 2 1_555 ? ? ? ? ? ? ? 1.430 sing ? covale2 covale both ? C ZB1 . C1 ? ? ? 1_555 C ZB0 . O4 ? ? C ZB1 1 C ZB0 7 1_555 ? ? ? ? ? ? ? 1.439 sing ? covale3 covale both ? C GLC . O4 ? ? ? 1_555 C GLC . C1 ? ? C GLC 2 C GLC 3 1_555 ? ? ? ? ? ? ? 1.418 sing ? covale4 covale both ? C GLC . O4 ? ? ? 1_555 C ZB2 . C1 ? ? C GLC 3 C ZB2 4 1_555 ? ? ? ? ? ? ? 1.414 sing ? covale5 covale both ? C ZB2 . O4 ? ? ? 1_555 C ZB3 . C1 ? ? C ZB2 4 C ZB3 5 1_555 ? ? ? ? ? ? ? 1.412 sing ? covale6 covale both ? C ZB3 . O4 ? ? ? 1_555 C ZB2 . C1 ? ? C ZB3 5 C ZB2 6 1_555 ? ? ? ? ? ? ? 1.420 sing ? covale7 covale both ? C ZB2 . O4 ? ? ? 1_555 C ZB0 . C1 ? ? C ZB2 6 C ZB0 7 1_555 ? ? ? ? ? ? ? 1.425 sing ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 61 ? PHE B 62 ? SER A 64 PHE A 65 A 2 CYS B 67 ? TRP B 68 ? CYS A 70 TRP A 71 B 1 ALA B 75 ? SER B 80 ? ALA A 78 SER A 83 B 2 PHE B 95 ? CYS B 100 ? PHE A 98 CYS A 103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER B 61 ? N SER A 64 O TRP B 68 ? O TRP A 71 B 1 2 N ALA B 77 ? N ALA A 80 O ARG B 98 ? O ARG A 101 # _atom_sites.entry_id 2QKH _atom_sites.fract_transf_matrix[1][1] 0.011904 _atom_sites.fract_transf_matrix[1][2] 0.006873 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013745 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005526 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1 1 TYR TYR B . n A 1 2 ALA 2 2 2 ALA ALA B . n A 1 3 GLU 3 3 3 GLU GLU B . n A 1 4 GLY 4 4 4 GLY GLY B . n A 1 5 THR 5 5 5 THR THR B . n A 1 6 PHE 6 6 6 PHE PHE B . n A 1 7 ILE 7 7 7 ILE ILE B . n A 1 8 SER 8 8 8 SER SER B . n A 1 9 ASP 9 9 9 ASP ASP B . n A 1 10 TYR 10 10 10 TYR TYR B . n A 1 11 SER 11 11 11 SER SER B . n A 1 12 ILE 12 12 12 ILE ILE B . n A 1 13 ALA 13 13 13 ALA ALA B . n A 1 14 MET 14 14 14 MET MET B . n A 1 15 ASP 15 15 15 ASP ASP B . n A 1 16 LYS 16 16 16 LYS LYS B . n A 1 17 ILE 17 17 17 ILE ILE B . n A 1 18 HIS 18 18 18 HIS HIS B . n A 1 19 GLN 19 19 19 GLN GLN B . n A 1 20 GLN 20 20 20 GLN GLN B . n A 1 21 ASP 21 21 21 ASP ASP B . n A 1 22 PHE 22 22 22 PHE PHE B . n A 1 23 VAL 23 23 23 VAL VAL B . n A 1 24 ASN 24 24 24 ASN ASN B . n A 1 25 TRP 25 25 25 TRP TRP B . n A 1 26 LEU 26 26 26 LEU LEU B . n A 1 27 LEU 27 27 27 LEU LEU B . n A 1 28 ALA 28 28 28 ALA ALA B . n A 1 29 GLN 29 29 29 GLN GLN B . n A 1 30 LYS 30 30 30 LYS LYS B . n A 1 31 GLY 31 31 31 GLY GLY B . n A 1 32 LYS 32 32 32 LYS LYS B . n A 1 33 LYS 33 33 ? ? ? B . n A 1 34 ASN 34 34 ? ? ? B . n A 1 35 ASP 35 35 ? ? ? B . n A 1 36 TRP 36 36 ? ? ? B . n A 1 37 LYS 37 37 ? ? ? B . n A 1 38 HIS 38 38 ? ? ? B . n A 1 39 ASN 39 39 ? ? ? B . n A 1 40 ILE 40 40 ? ? ? B . n A 1 41 THR 41 41 ? ? ? B . n A 1 42 GLN 42 42 ? ? ? B . n B 2 1 GLY 1 4 ? ? ? A . n B 2 2 SER 2 5 ? ? ? A . n B 2 3 SER 3 6 ? ? ? A . n B 2 4 HIS 4 7 ? ? ? A . n B 2 5 HIS 5 8 ? ? ? A . n B 2 6 HIS 6 9 ? ? ? A . n B 2 7 HIS 7 10 ? ? ? A . n B 2 8 HIS 8 11 ? ? ? A . n B 2 9 HIS 9 12 ? ? ? A . n B 2 10 SER 10 13 ? ? ? A . n B 2 11 SER 11 14 ? ? ? A . n B 2 12 GLY 12 15 ? ? ? A . n B 2 13 LEU 13 16 ? ? ? A . n B 2 14 VAL 14 17 ? ? ? A . n B 2 15 PRO 15 18 ? ? ? A . n B 2 16 ARG 16 19 ? ? ? A . n B 2 17 GLY 17 20 ? ? ? A . n B 2 18 SER 18 21 ? ? ? A . n B 2 19 HIS 19 22 ? ? ? A . n B 2 20 MET 20 23 ? ? ? A . n B 2 21 GLU 21 24 ? ? ? A . n B 2 22 THR 22 25 ? ? ? A . n B 2 23 GLY 23 26 ? ? ? A . n B 2 24 SER 24 27 ? ? ? A . n B 2 25 LYS 25 28 ? ? ? A . n B 2 26 GLY 26 29 29 GLY GLY A . n B 2 27 GLN 27 30 30 GLN GLN A . n B 2 28 THR 28 31 31 THR THR A . n B 2 29 ALA 29 32 32 ALA ALA A . n B 2 30 GLY 30 33 33 GLY GLY A . n B 2 31 GLU 31 34 34 GLU GLU A . n B 2 32 LEU 32 35 35 LEU LEU A . n B 2 33 TYR 33 36 36 TYR TYR A . n B 2 34 GLN 34 37 37 GLN GLN A . n B 2 35 ARG 35 38 38 ARG ARG A . n B 2 36 TRP 36 39 39 TRP TRP A . n B 2 37 GLU 37 40 40 GLU GLU A . n B 2 38 ARG 38 41 41 ARG ARG A . n B 2 39 TYR 39 42 42 TYR TYR A . n B 2 40 ARG 40 43 43 ARG ARG A . n B 2 41 ARG 41 44 44 ARG ARG A . n B 2 42 GLU 42 45 45 GLU GLU A . n B 2 43 CYS 43 46 46 CYS CYS A . n B 2 44 GLN 44 47 47 GLN GLN A . n B 2 45 GLU 45 48 48 GLU GLU A . n B 2 46 THR 46 49 49 THR THR A . n B 2 47 LEU 47 50 50 LEU LEU A . n B 2 48 ALA 48 51 51 ALA ALA A . n B 2 49 ALA 49 52 52 ALA ALA A . n B 2 50 ALA 50 53 53 ALA ALA A . n B 2 51 GLU 51 54 54 GLU GLU A . n B 2 52 PRO 52 55 55 PRO PRO A . n B 2 53 PRO 53 56 56 PRO PRO A . n B 2 54 SER 54 57 57 SER SER A . n B 2 55 GLY 55 58 58 GLY GLY A . n B 2 56 LEU 56 59 59 LEU LEU A . n B 2 57 ALA 57 60 60 ALA ALA A . n B 2 58 CYS 58 61 61 CYS CYS A . n B 2 59 ASN 59 62 62 ASN ASN A . n B 2 60 GLY 60 63 63 GLY GLY A . n B 2 61 SER 61 64 64 SER SER A . n B 2 62 PHE 62 65 65 PHE PHE A . n B 2 63 ASP 63 66 66 ASP ASP A . n B 2 64 MET 64 67 67 MET MET A . n B 2 65 TYR 65 68 68 TYR TYR A . n B 2 66 VAL 66 69 69 VAL VAL A . n B 2 67 CYS 67 70 70 CYS CYS A . n B 2 68 TRP 68 71 71 TRP TRP A . n B 2 69 ASP 69 72 72 ASP ASP A . n B 2 70 TYR 70 73 73 TYR TYR A . n B 2 71 ALA 71 74 74 ALA ALA A . n B 2 72 ALA 72 75 75 ALA ALA A . n B 2 73 PRO 73 76 76 PRO PRO A . n B 2 74 ASN 74 77 77 ASN ASN A . n B 2 75 ALA 75 78 78 ALA ALA A . n B 2 76 THR 76 79 79 THR THR A . n B 2 77 ALA 77 80 80 ALA ALA A . n B 2 78 ARG 78 81 81 ARG ARG A . n B 2 79 ALA 79 82 82 ALA ALA A . n B 2 80 SER 80 83 83 SER SER A . n B 2 81 CYS 81 84 84 CYS CYS A . n B 2 82 PRO 82 85 85 PRO PRO A . n B 2 83 TRP 83 86 86 TRP TRP A . n B 2 84 TYR 84 87 87 TYR TYR A . n B 2 85 LEU 85 88 88 LEU LEU A . n B 2 86 PRO 86 89 89 PRO PRO A . n B 2 87 TRP 87 90 90 TRP TRP A . n B 2 88 HIS 88 91 91 HIS HIS A . n B 2 89 HIS 89 92 92 HIS HIS A . n B 2 90 HIS 90 93 93 HIS HIS A . n B 2 91 VAL 91 94 94 VAL VAL A . n B 2 92 ALA 92 95 95 ALA ALA A . n B 2 93 ALA 93 96 96 ALA ALA A . n B 2 94 GLY 94 97 97 GLY GLY A . n B 2 95 PHE 95 98 98 PHE PHE A . n B 2 96 VAL 96 99 99 VAL VAL A . n B 2 97 LEU 97 100 100 LEU LEU A . n B 2 98 ARG 98 101 101 ARG ARG A . n B 2 99 GLN 99 102 102 GLN GLN A . n B 2 100 CYS 100 103 103 CYS CYS A . n B 2 101 GLY 101 104 104 GLY GLY A . n B 2 102 SER 102 105 105 SER SER A . n B 2 103 ASP 103 106 106 ASP ASP A . n B 2 104 GLY 104 107 107 GLY GLY A . n B 2 105 GLN 105 108 108 GLN GLN A . n B 2 106 TRP 106 109 109 TRP TRP A . n B 2 107 GLY 107 110 110 GLY GLY A . n B 2 108 LEU 108 111 111 LEU LEU A . n B 2 109 TRP 109 112 112 TRP TRP A . n B 2 110 ARG 110 113 113 ARG ARG A . n B 2 111 ASP 111 114 114 ASP ASP A . n B 2 112 HIS 112 115 115 HIS HIS A . n B 2 113 THR 113 116 116 THR THR A . n B 2 114 GLN 114 117 117 GLN GLN A . n B 2 115 CYS 115 118 118 CYS CYS A . n B 2 116 GLU 116 119 119 GLU GLU A . n B 2 117 ASN 117 120 120 ASN ASN A . n B 2 118 PRO 118 121 121 PRO PRO A . n B 2 119 GLU 119 122 122 GLU GLU A . n B 2 120 LYS 120 123 ? ? ? A . n B 2 121 ASN 121 124 ? ? ? A . n B 2 122 GLU 122 125 ? ? ? A . n B 2 123 ALA 123 126 ? ? ? A . n B 2 124 PHE 124 127 ? ? ? A . n B 2 125 LEU 125 128 ? ? ? A . n B 2 126 ASP 126 129 ? ? ? A . n B 2 127 GLN 127 130 ? ? ? A . n B 2 128 ARG 128 131 ? ? ? A . n B 2 129 LEU 129 132 ? ? ? A . n B 2 130 ILE 130 133 ? ? ? A . n B 2 131 LEU 131 134 ? ? ? A . n B 2 132 GLU 132 135 ? ? ? A . n B 2 133 ARG 133 136 ? ? ? A . n B 2 134 LEU 134 137 ? ? ? A . n B 2 135 GLN 135 138 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TAR 1 151 151 TAR TAR A . E 5 HOH 1 201 201 HOH HOH B . E 5 HOH 2 205 205 HOH HOH B . E 5 HOH 3 208 208 HOH HOH B . E 5 HOH 4 209 209 HOH HOH B . E 5 HOH 5 210 210 HOH HOH B . E 5 HOH 6 211 211 HOH HOH B . E 5 HOH 7 214 214 HOH HOH B . E 5 HOH 8 216 216 HOH HOH B . E 5 HOH 9 217 217 HOH HOH B . E 5 HOH 10 221 221 HOH HOH B . E 5 HOH 11 228 228 HOH HOH B . E 5 HOH 12 239 239 HOH HOH B . E 5 HOH 13 241 241 HOH HOH B . E 5 HOH 14 244 244 HOH HOH B . E 5 HOH 15 246 246 HOH HOH B . E 5 HOH 16 248 248 HOH HOH B . E 5 HOH 17 251 251 HOH HOH B . E 5 HOH 18 263 263 HOH HOH B . E 5 HOH 19 264 264 HOH HOH B . E 5 HOH 20 265 265 HOH HOH B . E 5 HOH 21 269 269 HOH HOH B . E 5 HOH 22 273 273 HOH HOH B . E 5 HOH 23 276 276 HOH HOH B . E 5 HOH 24 277 277 HOH HOH B . E 5 HOH 25 282 282 HOH HOH B . E 5 HOH 26 283 283 HOH HOH B . E 5 HOH 27 285 285 HOH HOH B . E 5 HOH 28 286 286 HOH HOH B . E 5 HOH 29 288 288 HOH HOH B . E 5 HOH 30 290 290 HOH HOH B . E 5 HOH 31 291 291 HOH HOH B . E 5 HOH 32 301 301 HOH HOH B . E 5 HOH 33 304 304 HOH HOH B . E 5 HOH 34 309 309 HOH HOH B . E 5 HOH 35 315 315 HOH HOH B . E 5 HOH 36 320 320 HOH HOH B . E 5 HOH 37 321 321 HOH HOH B . E 5 HOH 38 327 327 HOH HOH B . F 5 HOH 1 200 200 HOH HOH A . F 5 HOH 2 202 202 HOH HOH A . F 5 HOH 3 203 203 HOH HOH A . F 5 HOH 4 204 204 HOH HOH A . F 5 HOH 5 206 206 HOH HOH A . F 5 HOH 6 207 207 HOH HOH A . F 5 HOH 7 212 212 HOH HOH A . F 5 HOH 8 215 215 HOH HOH A . F 5 HOH 9 218 218 HOH HOH A . F 5 HOH 10 219 219 HOH HOH A . F 5 HOH 11 220 220 HOH HOH A . F 5 HOH 12 222 222 HOH HOH A . F 5 HOH 13 223 223 HOH HOH A . F 5 HOH 14 224 224 HOH HOH A . F 5 HOH 15 225 225 HOH HOH A . F 5 HOH 16 226 226 HOH HOH A . F 5 HOH 17 227 227 HOH HOH A . F 5 HOH 18 229 229 HOH HOH A . F 5 HOH 19 230 230 HOH HOH A . F 5 HOH 20 231 231 HOH HOH A . F 5 HOH 21 232 232 HOH HOH A . F 5 HOH 22 233 233 HOH HOH A . F 5 HOH 23 234 234 HOH HOH A . F 5 HOH 24 235 235 HOH HOH A . F 5 HOH 25 236 236 HOH HOH A . F 5 HOH 26 237 237 HOH HOH A . F 5 HOH 27 238 238 HOH HOH A . F 5 HOH 28 240 240 HOH HOH A . F 5 HOH 29 242 242 HOH HOH A . F 5 HOH 30 243 243 HOH HOH A . F 5 HOH 31 245 245 HOH HOH A . F 5 HOH 32 247 247 HOH HOH A . F 5 HOH 33 249 249 HOH HOH A . F 5 HOH 34 250 250 HOH HOH A . F 5 HOH 35 252 252 HOH HOH A . F 5 HOH 36 253 253 HOH HOH A . F 5 HOH 37 254 254 HOH HOH A . F 5 HOH 38 255 255 HOH HOH A . F 5 HOH 39 256 256 HOH HOH A . F 5 HOH 40 257 257 HOH HOH A . F 5 HOH 41 258 258 HOH HOH A . F 5 HOH 42 259 259 HOH HOH A . F 5 HOH 43 260 260 HOH HOH A . F 5 HOH 44 261 261 HOH HOH A . F 5 HOH 45 262 262 HOH HOH A . F 5 HOH 46 266 266 HOH HOH A . F 5 HOH 47 267 267 HOH HOH A . F 5 HOH 48 268 268 HOH HOH A . F 5 HOH 49 270 270 HOH HOH A . F 5 HOH 50 271 271 HOH HOH A . F 5 HOH 51 272 272 HOH HOH A . F 5 HOH 52 274 274 HOH HOH A . F 5 HOH 53 275 275 HOH HOH A . F 5 HOH 54 278 278 HOH HOH A . F 5 HOH 55 279 279 HOH HOH A . F 5 HOH 56 280 280 HOH HOH A . F 5 HOH 57 281 281 HOH HOH A . F 5 HOH 58 284 284 HOH HOH A . F 5 HOH 59 287 287 HOH HOH A . F 5 HOH 60 289 289 HOH HOH A . F 5 HOH 61 292 292 HOH HOH A . F 5 HOH 62 293 293 HOH HOH A . F 5 HOH 63 294 294 HOH HOH A . F 5 HOH 64 295 295 HOH HOH A . F 5 HOH 65 296 296 HOH HOH A . F 5 HOH 66 297 297 HOH HOH A . F 5 HOH 67 298 298 HOH HOH A . F 5 HOH 68 299 299 HOH HOH A . F 5 HOH 69 300 300 HOH HOH A . F 5 HOH 70 302 302 HOH HOH A . F 5 HOH 71 303 303 HOH HOH A . F 5 HOH 72 305 305 HOH HOH A . F 5 HOH 73 306 306 HOH HOH A . F 5 HOH 74 307 307 HOH HOH A . F 5 HOH 75 308 308 HOH HOH A . F 5 HOH 76 310 310 HOH HOH A . F 5 HOH 77 311 311 HOH HOH A . F 5 HOH 78 312 312 HOH HOH A . F 5 HOH 79 313 313 HOH HOH A . F 5 HOH 80 314 314 HOH HOH A . F 5 HOH 81 316 316 HOH HOH A . F 5 HOH 82 317 317 HOH HOH A . F 5 HOH 83 318 318 HOH HOH A . F 5 HOH 84 319 319 HOH HOH A . F 5 HOH 85 322 322 HOH HOH A . F 5 HOH 86 323 323 HOH HOH A . F 5 HOH 87 324 324 HOH HOH A . F 5 HOH 88 325 325 HOH HOH A . F 5 HOH 89 326 326 HOH HOH A . F 5 HOH 90 328 328 HOH HOH A . F 5 HOH 91 329 329 HOH HOH A . F 5 HOH 92 330 330 HOH HOH A . F 5 HOH 93 331 331 HOH HOH A . F 5 HOH 94 332 332 HOH HOH A . F 5 HOH 95 333 333 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900086 _pdbx_molecule_features.name methyl-beta-cyclodextrin _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class 'Drug delivery' _pdbx_molecule_features.details 'cyclic oligosaccharide' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900086 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 1250 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Non-polymer description' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' atom_site 3 4 'Structure model' atom_site_anisotrop 4 4 'Structure model' chem_comp 5 4 'Structure model' entity 6 4 'Structure model' entity_name_com 7 4 'Structure model' pdbx_branch_scheme 8 4 'Structure model' pdbx_chem_comp_identifier 9 4 'Structure model' pdbx_entity_branch 10 4 'Structure model' pdbx_entity_branch_descriptor 11 4 'Structure model' pdbx_entity_branch_link 12 4 'Structure model' pdbx_entity_branch_list 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' pdbx_molecule_features 15 4 'Structure model' pdbx_nonpoly_scheme 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_conn_type 18 4 'Structure model' struct_ref_seq_dif 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_atom_site.B_iso_or_equiv' 11 4 'Structure model' '_atom_site.Cartn_x' 12 4 'Structure model' '_atom_site.Cartn_y' 13 4 'Structure model' '_atom_site.Cartn_z' 14 4 'Structure model' '_atom_site.auth_asym_id' 15 4 'Structure model' '_atom_site.auth_atom_id' 16 4 'Structure model' '_atom_site.auth_comp_id' 17 4 'Structure model' '_atom_site.auth_seq_id' 18 4 'Structure model' '_atom_site.label_atom_id' 19 4 'Structure model' '_atom_site.label_comp_id' 20 4 'Structure model' '_atom_site.type_symbol' 21 4 'Structure model' '_atom_site_anisotrop.U[1][1]' 22 4 'Structure model' '_atom_site_anisotrop.U[2][2]' 23 4 'Structure model' '_atom_site_anisotrop.U[3][3]' 24 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 25 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 26 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 27 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 28 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 29 4 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 30 4 'Structure model' '_atom_site_anisotrop.type_symbol' 31 4 'Structure model' '_chem_comp.formula' 32 4 'Structure model' '_chem_comp.formula_weight' 33 4 'Structure model' '_chem_comp.id' 34 4 'Structure model' '_chem_comp.mon_nstd_flag' 35 4 'Structure model' '_chem_comp.name' 36 4 'Structure model' '_chem_comp.pdbx_synonyms' 37 4 'Structure model' '_chem_comp.type' 38 4 'Structure model' '_entity.formula_weight' 39 4 'Structure model' '_entity.pdbx_description' 40 4 'Structure model' '_entity.src_method' 41 4 'Structure model' '_entity.type' 42 4 'Structure model' '_struct_ref_seq_dif.details' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.700 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 27297 _diffrn_reflns.pdbx_Rmerge_I_obs 0.109 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 0.92 _diffrn_reflns.av_sigmaI_over_netI 9.30 _diffrn_reflns.pdbx_redundancy 49.20 _diffrn_reflns.pdbx_percent_possible_obs 100.00 _diffrn_reflns.number 1342132 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 3.66 50.00 ? ? 0.070 ? 0.872 50.10 100.00 1 2.91 3.66 ? ? 0.079 ? 0.906 51.00 100.00 1 2.54 2.91 ? ? 0.107 ? 1.010 50.80 100.00 1 2.31 2.54 ? ? 0.143 ? 1.035 50.40 100.00 1 2.14 2.31 ? ? 0.200 ? 1.011 49.90 100.00 1 2.02 2.14 ? ? 0.283 ? 0.896 49.80 100.00 1 1.91 2.02 ? ? 0.455 ? 0.962 49.20 100.00 1 1.83 1.91 ? ? 0.599 ? 0.777 48.90 100.00 1 1.76 1.83 ? ? 0.775 ? 0.791 48.40 100.00 1 1.70 1.76 ? ? 0.967 ? 0.930 43.20 100.00 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 29.4320 9.5660 46.1080 -0.3064 -0.2534 -0.2370 -0.2748 -0.2459 -0.2451 3.1797 1.3689 3.6442 -0.4896 1.7914 -0.7215 -0.1153 0.0394 0.0759 0.0671 0.1138 -0.1025 0.0187 -0.1151 0.3291 'X-RAY DIFFRACTION' 2 ? refined 8.7420 7.6060 43.5420 -0.2996 -0.2506 -0.2391 -0.2708 -0.2259 -0.2353 20.7615 4.2071 2.4874 -7.8844 5.0829 -1.7033 0.0674 -0.0718 0.0045 0.0101 -0.1530 0.1306 0.0756 -0.0179 -0.0502 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 B 26 B 119 ? A 29 A 122 'X-RAY DIFFRACTION' ? 2 2 A 1 A 32 ? B 1 B 32 'X-RAY DIFFRACTION' ? # _pdbx_phasing_dm.entry_id 2QKH _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 27296 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 6.720 100.000 23.700 ? ? ? 0.816 ? ? 506 5.250 6.720 26.100 ? ? ? 0.884 ? ? 512 4.560 5.250 22.300 ? ? ? 0.922 ? ? 501 4.090 4.560 20.200 ? ? ? 0.931 ? ? 567 3.740 4.090 20.100 ? ? ? 0.928 ? ? 633 3.460 3.740 20.600 ? ? ? 0.920 ? ? 667 3.240 3.460 23.100 ? ? ? 0.922 ? ? 715 3.060 3.240 25.100 ? ? ? 0.913 ? ? 784 2.900 3.060 27.400 ? ? ? 0.899 ? ? 788 2.770 2.900 27.000 ? ? ? 0.905 ? ? 837 2.650 2.770 27.100 ? ? ? 0.902 ? ? 869 2.550 2.650 26.000 ? ? ? 0.900 ? ? 924 2.460 2.550 27.400 ? ? ? 0.897 ? ? 963 2.370 2.460 29.000 ? ? ? 0.892 ? ? 969 2.300 2.370 26.800 ? ? ? 0.903 ? ? 1027 2.230 2.300 29.500 ? ? ? 0.904 ? ? 1027 2.170 2.230 26.700 ? ? ? 0.911 ? ? 1065 2.110 2.170 26.300 ? ? ? 0.898 ? ? 1107 2.060 2.110 25.200 ? ? ? 0.909 ? ? 1136 2.010 2.060 25.500 ? ? ? 0.903 ? ? 1162 1.960 2.010 26.300 ? ? ? 0.903 ? ? 1177 1.920 1.960 28.200 ? ? ? 0.866 ? ? 1201 1.880 1.920 27.400 ? ? ? 0.898 ? ? 1240 1.840 1.880 28.800 ? ? ? 0.895 ? ? 1253 1.810 1.840 28.100 ? ? ? 0.895 ? ? 1299 1.770 1.810 28.200 ? ? ? 0.896 ? ? 1301 1.740 1.770 31.100 ? ? ? 0.876 ? ? 1337 1.700 1.740 38.200 ? ? ? 0.836 ? ? 1729 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 DM 5.0 ? program 'K. Cowtan' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 CrystalClear . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 SHELXS . ? ? ? ? phasing ? ? ? 8 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLU 40 ? ? NH1 A ARG 43 ? A 2.03 2 1 NH2 A ARG 43 ? A O A HOH 207 ? ? 2.06 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 C2 A TAR 151 ? ? 1_555 C2 A TAR 151 ? ? 12_555 1.76 2 1 O A HOH 203 ? ? 1_555 O A HOH 203 ? ? 12_555 1.76 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 30 ? ? -101.14 46.25 2 1 MET A 67 ? ? 88.96 -23.56 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A TAR 151 ? C3 ? D TAR 1 C3 2 1 N 1 A TAR 151 ? O3 ? D TAR 1 O3 3 1 N 1 A TAR 151 ? C4 ? D TAR 1 C4 4 1 N 1 A TAR 151 ? O4 ? D TAR 1 O4 5 1 N 1 A TAR 151 ? O41 ? D TAR 1 O41 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B LYS 33 ? A LYS 33 2 1 Y 1 B ASN 34 ? A ASN 34 3 1 Y 1 B ASP 35 ? A ASP 35 4 1 Y 1 B TRP 36 ? A TRP 36 5 1 Y 1 B LYS 37 ? A LYS 37 6 1 Y 1 B HIS 38 ? A HIS 38 7 1 Y 1 B ASN 39 ? A ASN 39 8 1 Y 1 B ILE 40 ? A ILE 40 9 1 Y 1 B THR 41 ? A THR 41 10 1 Y 1 B GLN 42 ? A GLN 42 11 1 Y 1 A GLY 4 ? B GLY 1 12 1 Y 1 A SER 5 ? B SER 2 13 1 Y 1 A SER 6 ? B SER 3 14 1 Y 1 A HIS 7 ? B HIS 4 15 1 Y 1 A HIS 8 ? B HIS 5 16 1 Y 1 A HIS 9 ? B HIS 6 17 1 Y 1 A HIS 10 ? B HIS 7 18 1 Y 1 A HIS 11 ? B HIS 8 19 1 Y 1 A HIS 12 ? B HIS 9 20 1 Y 1 A SER 13 ? B SER 10 21 1 Y 1 A SER 14 ? B SER 11 22 1 Y 1 A GLY 15 ? B GLY 12 23 1 Y 1 A LEU 16 ? B LEU 13 24 1 Y 1 A VAL 17 ? B VAL 14 25 1 Y 1 A PRO 18 ? B PRO 15 26 1 Y 1 A ARG 19 ? B ARG 16 27 1 Y 1 A GLY 20 ? B GLY 17 28 1 Y 1 A SER 21 ? B SER 18 29 1 Y 1 A HIS 22 ? B HIS 19 30 1 Y 1 A MET 23 ? B MET 20 31 1 Y 1 A GLU 24 ? B GLU 21 32 1 Y 1 A THR 25 ? B THR 22 33 1 Y 1 A GLY 26 ? B GLY 23 34 1 Y 1 A SER 27 ? B SER 24 35 1 Y 1 A LYS 28 ? B LYS 25 36 1 Y 1 A LYS 123 ? B LYS 120 37 1 Y 1 A ASN 124 ? B ASN 121 38 1 Y 1 A GLU 125 ? B GLU 122 39 1 Y 1 A ALA 126 ? B ALA 123 40 1 Y 1 A PHE 127 ? B PHE 124 41 1 Y 1 A LEU 128 ? B LEU 125 42 1 Y 1 A ASP 129 ? B ASP 126 43 1 Y 1 A GLN 130 ? B GLN 127 44 1 Y 1 A ARG 131 ? B ARG 128 45 1 Y 1 A LEU 132 ? B LEU 129 46 1 Y 1 A ILE 133 ? B ILE 130 47 1 Y 1 A LEU 134 ? B LEU 131 48 1 Y 1 A GLU 135 ? B GLU 132 49 1 Y 1 A ARG 136 ? B ARG 133 50 1 Y 1 A LEU 137 ? B LEU 134 51 1 Y 1 A GLN 138 ? B GLN 135 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 ZB1 1 C ZB1 1 B QKH 150 n C 3 GLC 2 C GLC 2 B QKH 150 n C 3 GLC 3 C GLC 3 B QKH 150 n C 3 ZB2 4 C ZB2 4 B QKH 150 n C 3 ZB3 5 C ZB3 5 B QKH 150 n C 3 ZB2 6 C ZB2 6 B QKH 150 n C 3 ZB0 7 C ZB0 7 B QKH 150 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_descriptor.ordinal 1 _pdbx_entity_branch_descriptor.entity_id 3 _pdbx_entity_branch_descriptor.descriptor ;WURCS=2.0/5,7,7/[a2122h-1a_1-5_2*OC_3*OC][a2122h-1a_1-5_3*OC][a2122h-1a_1-5][a2122h-1a_1-5_2*OC][a2122h-1a_1-5_2*OC_6*OC]/1-2-3-3-4-5-4/a1-g4_a4-b1_b4-c1_c4-d1_d4-e1_e4-f1_f4-g1 ; _pdbx_entity_branch_descriptor.type WURCS _pdbx_entity_branch_descriptor.program PDB2Glycan _pdbx_entity_branch_descriptor.program_version 1.1.0 # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 1 ZB1 C1 O1 7 ZB0 O4 HO4 sing ? 2 3 2 GLC C1 O1 1 ZB1 O4 HO4 sing ? 3 3 3 GLC C1 O1 2 GLC O4 HO4 sing ? 4 3 4 ZB2 C1 O1 3 GLC O4 HO4 sing ? 5 3 5 ZB3 C1 O1 4 ZB2 O4 HO4 sing ? 6 3 6 ZB2 C1 O1 5 ZB3 O4 HO4 sing ? 7 3 7 ZB0 C1 O1 6 ZB2 O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 ZB1 1 n 3 GLC 2 n 3 GLC 3 n 3 ZB2 4 n 3 ZB3 5 n 3 ZB2 6 n 3 ZB0 7 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'D(-)-TARTARIC ACID' TAR 5 water HOH #