HEADER TRANSCRIPTION/DNA 12-JUL-07 2QL2 TITLE CRYSTAL STRUCTURE OF THE BASIC-HELIX-LOOP-HELIX DOMAINS OF THE TITLE 2 HETERODIMER E47/NEUROD1 BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR E2-ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: BASIC-HELIX-LOOP-HELIX DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NEUROGENIC DIFFERENTIATION FACTOR 1; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: BASIC HELIX-LOOP-HELIX DOMAIN; COMPND 10 SYNONYM: NEUROD1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*DTP*DAP*DGP*DGP*DCP*DCP*DAP*DTP*DCP*DTP*DGP*DGP*DTP*DCP*DCP*DT)- COMPND 15 3'); COMPND 16 CHAIN: E, G; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'- COMPND 20 D(*DAP*DGP*DGP*DAP*DCP*DCP*DAP*DGP*DAP*DTP*DGP*DGP*DCP*DCP*DTP*DA)- COMPND 21 3'); COMPND 22 CHAIN: F, H; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TCF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: NEUROD1, NEUROD; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCDF-1B; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: SYNTHESIZED OLIGONUCLEOTIDE; SOURCE 24 MOL_ID: 4; SOURCE 25 SYNTHETIC: YES; SOURCE 26 OTHER_DETAILS: SYNTHESIZED OLIGONUCLEOTIDE KEYWDS BASIC-HELIX-LOOP-HELIX, PROTEIN-DNA COMPLEX, HETERODIMER, DNA- KEYWDS 2 BINDING, ACTIVATOR, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, KEYWDS 3 NEUROGENESIS, NUCLEUS, PHOSPHORYLATION, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, CYTOPLASM, PHOSPHOPROTEIN, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.B.ROSE,A.LONGO,G.P.GUANGA REVDAT 5 30-AUG-23 2QL2 1 DBREF SEQADV REVDAT 4 09-JUN-09 2QL2 1 REVDAT REVDAT 3 24-FEB-09 2QL2 1 VERSN REVDAT 2 02-DEC-08 2QL2 1 JRNL REVDAT 1 04-NOV-08 2QL2 0 JRNL AUTH A.LONGO,G.P.GUANGA,R.B.ROSE JRNL TITL CRYSTAL STRUCTURE OF E47-NEUROD1/BETA2 BHLH DOMAIN-DNA JRNL TITL 2 COMPLEX: HETERODIMER SELECTIVITY AND DNA RECOGNITION. JRNL REF BIOCHEMISTRY V. 47 218 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18069799 JRNL DOI 10.1021/BI701527R REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 18781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1884 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3963 REMARK 3 BIN FREE R VALUE : 0.4337 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 197 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1751 REMARK 3 NUCLEIC ACID ATOMS : 1300 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.54900 REMARK 3 B22 (A**2) : -10.08400 REMARK 3 B33 (A**2) : 18.63300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 83.75 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:DNA-RNA.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: OPTIMAL B-RESTRAINTS WEIGHT (RWEIGHT) REMARK 3 IN CNS WAS 0.0198 REMARK 4 REMARK 4 2QL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000043732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : SAGITTAL FOCUSING CRYSTAL AND REMARK 200 VERTICAL FOCUSING DOUBLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 169.546 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : 0.77000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1MDY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM IMIDAZOLE, 0.2 M AMMONIUM REMARK 280 CITRATE DIBASIC, AND 22 % PEG 4000, PH 7.6, EVAPORATION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.15500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.15500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 84.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETERODIMER OF E47 AND NEUROD1 REMARK 300 BOUND TO A DNA DUPLEX. THERE ARE 2 OF THESE COMPLEXES IN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 575 REMARK 465 ASP A 576 REMARK 465 LYS A 577 REMARK 465 ARG A 602 REMARK 465 GLY B 160 REMARK 465 LYS C 577 REMARK 465 ALA C 578 REMARK 465 SER D 101 REMARK 465 SER D 159 REMARK 465 GLY D 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 543 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 567 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 570 CG CD OE1 NE2 REMARK 470 LEU A 571 CG CD1 CD2 REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 GLU A 601 CG CD OE1 OE2 REMARK 470 SER B 101 OG REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 MET B 104 CG SD CE REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 ARG B 109 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 THR B 134 OG1 CG2 REMARK 470 GLN B 135 CG CD OE1 NE2 REMARK 470 SER B 159 OG REMARK 470 ARG C 543 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 544 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 551 CG CD OE1 OE2 REMARK 470 GLU C 560 CG CD OE1 OE2 REMARK 470 ARG C 563 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 564 CG CD OE1 OE2 REMARK 470 ARG C 567 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 570 CG CD OE1 NE2 REMARK 470 LEU C 571 CG CD1 CD2 REMARK 470 LYS C 574 CG CD CE NZ REMARK 470 ASP C 576 CG OD1 OD2 REMARK 470 ARG C 602 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 103 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 105 CG CD CE NZ REMARK 470 ARG D 109 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 133 CG CD CE NZ REMARK 470 LYS D 147 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC E 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 579 86.96 85.37 REMARK 500 VAL A 599 16.27 -67.38 REMARK 500 SER B 132 111.73 -167.86 REMARK 500 ARG B 158 -58.54 -128.91 REMARK 500 LYS C 574 -82.88 73.34 REMARK 500 SER C 575 109.51 4.55 REMARK 500 THR D 134 78.55 -157.92 REMARK 500 GLN D 135 62.22 169.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN IN CHAINS A AND C MATCH THE UNP SEQUENCE DATABASE REMARK 999 REFERENCE P15806(ISOFORM E47; P15806-2), RESIDUES 544-603 DBREF 2QL2 A 543 602 PDB 2QL2 2QL2 543 602 DBREF 2QL2 B 102 160 UNP Q60867 NDF1_MOUSE 102 160 DBREF 2QL2 C 543 602 PDB 2QL2 2QL2 543 602 DBREF 2QL2 D 102 160 UNP Q60867 NDF1_MOUSE 102 160 DBREF 2QL2 E 1 16 PDB 2QL2 2QL2 1 16 DBREF 2QL2 F 20 35 PDB 2QL2 2QL2 20 35 DBREF 2QL2 G 1 16 PDB 2QL2 2QL2 1 16 DBREF 2QL2 H 20 35 PDB 2QL2 2QL2 20 35 SEQADV 2QL2 SER B 101 UNP Q60867 INSERTION SEQADV 2QL2 SER D 101 UNP Q60867 INSERTION SEQRES 1 A 60 ARG ARG MET ALA ASN ASN ALA ARG GLU ARG VAL ARG VAL SEQRES 2 A 60 ARG ASP ILE ASN GLU ALA PHE ARG GLU LEU GLY ARG MET SEQRES 3 A 60 CYS GLN LEU HIS LEU LYS SER ASP LYS ALA GLN THR LYS SEQRES 4 A 60 LEU LEU ILE LEU GLN GLN ALA VAL GLN VAL ILE LEU GLY SEQRES 5 A 60 LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 B 60 SER ARG ARG MET LYS ALA ASN ALA ARG GLU ARG ASN ARG SEQRES 2 B 60 MET HIS GLY LEU ASN ALA ALA LEU ASP ASN LEU ARG LYS SEQRES 3 B 60 VAL VAL PRO CYS TYR SER LYS THR GLN LYS LEU SER LYS SEQRES 4 B 60 ILE GLU THR LEU ARG LEU ALA LYS ASN TYR ILE TRP ALA SEQRES 5 B 60 LEU SER GLU ILE LEU ARG SER GLY SEQRES 1 C 60 ARG ARG MET ALA ASN ASN ALA ARG GLU ARG VAL ARG VAL SEQRES 2 C 60 ARG ASP ILE ASN GLU ALA PHE ARG GLU LEU GLY ARG MET SEQRES 3 C 60 CYS GLN LEU HIS LEU LYS SER ASP LYS ALA GLN THR LYS SEQRES 4 C 60 LEU LEU ILE LEU GLN GLN ALA VAL GLN VAL ILE LEU GLY SEQRES 5 C 60 LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 D 60 SER ARG ARG MET LYS ALA ASN ALA ARG GLU ARG ASN ARG SEQRES 2 D 60 MET HIS GLY LEU ASN ALA ALA LEU ASP ASN LEU ARG LYS SEQRES 3 D 60 VAL VAL PRO CYS TYR SER LYS THR GLN LYS LEU SER LYS SEQRES 4 D 60 ILE GLU THR LEU ARG LEU ALA LYS ASN TYR ILE TRP ALA SEQRES 5 D 60 LEU SER GLU ILE LEU ARG SER GLY SEQRES 1 E 16 DT DA DG DG DC DC DA DT DC DT DG DG DT SEQRES 2 E 16 DC DC DT SEQRES 1 F 16 DA DG DG DA DC DC DA DG DA DT DG DG DC SEQRES 2 F 16 DC DT DA SEQRES 1 G 16 DT DA DG DG DC DC DA DT DC DT DG DG DT SEQRES 2 G 16 DC DC DT SEQRES 1 H 16 DA DG DG DA DC DC DA DG DA DT DG DG DC SEQRES 2 H 16 DC DT DA FORMUL 9 HOH *41(H2 O) HELIX 1 1 ARG A 543 LEU A 571 1 29 HELIX 2 2 THR A 580 VAL A 599 1 20 HELIX 3 3 SER B 101 VAL B 127 1 27 HELIX 4 4 SER B 138 LEU B 157 1 20 HELIX 5 5 ARG C 543 LYS C 574 1 32 HELIX 6 6 THR C 580 ARG C 602 1 23 HELIX 7 7 ARG D 103 VAL D 128 1 26 HELIX 8 8 SER D 138 ARG D 158 1 21 CRYST1 60.310 169.540 52.240 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016581 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019142 0.00000