data_2QSB # _entry.id 2QSB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QSB RCSB RCSB043992 WWPDB D_1000043992 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC86530.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2QSB _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Duggan, E.' 2 'Gu, M.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Structure of a protein from uncharacterized family UPF0147 from Thermoplasma acidophilum.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Duggan, E.' 2 primary 'Gu, M.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 50.584 _cell.length_b 50.584 _cell.length_c 59.283 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2QSB _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 65' _symmetry.entry_id 2QSB _symmetry.Int_Tables_number 170 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UPF0147 protein Ta0600' 10163.872 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 128 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)VRVDQNLFNEV(MSE)YLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRCATVLS(MSE)LDE(MSE) ANDPNVPAHGRTDLYTIISKLEALS ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMVRVDQNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRCATVLSMLDEMANDPNVPAHGRTDLYT IISKLEALS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC86530.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 VAL n 1 6 ARG n 1 7 VAL n 1 8 ASP n 1 9 GLN n 1 10 ASN n 1 11 LEU n 1 12 PHE n 1 13 ASN n 1 14 GLU n 1 15 VAL n 1 16 MSE n 1 17 TYR n 1 18 LEU n 1 19 LEU n 1 20 ASP n 1 21 GLU n 1 22 LEU n 1 23 SER n 1 24 GLN n 1 25 ASP n 1 26 ILE n 1 27 THR n 1 28 VAL n 1 29 PRO n 1 30 LYS n 1 31 ASN n 1 32 VAL n 1 33 ARG n 1 34 LYS n 1 35 VAL n 1 36 ALA n 1 37 GLN n 1 38 ASP n 1 39 SER n 1 40 LYS n 1 41 ALA n 1 42 LYS n 1 43 LEU n 1 44 SER n 1 45 GLN n 1 46 GLU n 1 47 ASN n 1 48 GLU n 1 49 SER n 1 50 LEU n 1 51 ASP n 1 52 LEU n 1 53 ARG n 1 54 CYS n 1 55 ALA n 1 56 THR n 1 57 VAL n 1 58 LEU n 1 59 SER n 1 60 MSE n 1 61 LEU n 1 62 ASP n 1 63 GLU n 1 64 MSE n 1 65 ALA n 1 66 ASN n 1 67 ASP n 1 68 PRO n 1 69 ASN n 1 70 VAL n 1 71 PRO n 1 72 ALA n 1 73 HIS n 1 74 GLY n 1 75 ARG n 1 76 THR n 1 77 ASP n 1 78 LEU n 1 79 TYR n 1 80 THR n 1 81 ILE n 1 82 ILE n 1 83 SER n 1 84 LYS n 1 85 LEU n 1 86 GLU n 1 87 ALA n 1 88 LEU n 1 89 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermoplasma _entity_src_gen.pdbx_gene_src_gene 'CAC11739, Ta0600' _entity_src_gen.gene_src_species 'Thermoplasma acidophilum' _entity_src_gen.gene_src_strain 'DSM 1728, IFO 15155, JCM 9062, AMRC-C165' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermoplasma acidophilum DSM 1728' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273075 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 25905 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y600_THEAC _struct_ref.pdbx_db_accession Q9HKJ8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVRVDQNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRCATVLSMLDEMANDPNVPAHGRTDLYTIIS KLEALS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QSB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HKJ8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 86 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 86 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QSB SER A 1 ? UNP Q9HKJ8 ? ? 'EXPRESSION TAG' -2 1 1 2QSB ASN A 2 ? UNP Q9HKJ8 ? ? 'EXPRESSION TAG' -1 2 1 2QSB ALA A 3 ? UNP Q9HKJ8 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2QSB _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2M Ammonium sulfate, 0.1M Tri-HCl pH 7.0, 0.2M Lithium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-12-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97931 1.0 2 0.97949 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97931, 0.97949' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 2QSB _reflns.d_resolution_high 1.250 _reflns.d_resolution_low 50.000 _reflns.number_obs 23474 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_netI_over_sigmaI 9.400 _reflns.pdbx_chi_squared 3.714 _reflns.pdbx_redundancy 11.100 _reflns.percent_possible_obs 98.200 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 23474 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 11.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.35 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.370 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.908 _reflns_shell.pdbx_redundancy 8.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1515 _reflns_shell.percent_possible_all 97.30 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2QSB _refine.ls_d_res_high 1.300 _refine.ls_d_res_low 24.550 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.620 _refine.ls_number_reflns_obs 21124 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.149 _refine.ls_R_factor_R_work 0.147 _refine.ls_R_factor_R_free 0.178 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1079 _refine.B_iso_mean 16.124 _refine.aniso_B[1][1] 0.270 _refine.aniso_B[2][2] 0.270 _refine.aniso_B[3][3] -0.410 _refine.aniso_B[1][2] 0.140 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.965 _refine.pdbx_overall_ESU_R 0.059 _refine.pdbx_overall_ESU_R_Free 0.053 _refine.overall_SU_ML 0.027 _refine.overall_SU_B 1.346 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 21124 _refine.ls_R_factor_all 0.149 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 875 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 1008 _refine_hist.d_res_high 1.300 _refine_hist.d_res_low 24.550 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 902 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1244 1.502 1.986 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 125 4.001 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 47 39.483 25.745 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 178 16.334 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 18.862 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 138 0.097 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 729 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 488 0.299 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 661 0.299 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 127 0.162 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 48 0.255 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 31 0.301 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 582 1.359 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 941 2.050 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 345 3.008 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 303 4.147 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 927 1.521 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 128 5.752 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 880 4.128 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.300 _refine_ls_shell.d_res_low 1.334 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.300 _refine_ls_shell.number_reflns_R_work 1438 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.178 _refine_ls_shell.R_factor_R_free 0.226 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1515 _refine_ls_shell.number_reflns_obs 1515 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QSB _struct.title 'Crystal structure of a protein from uncharacterized family UPF0147 from Thermoplasma acidophilum' _struct.pdbx_descriptor 'UPF0147 protein Ta0600' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QSB _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;structural genomics, four-helix bundle, Thermoplasma acidophilum, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 5 ? GLN A 24 ? VAL A 2 GLN A 21 1 ? 20 HELX_P HELX_P2 2 PRO A 29 ? SER A 44 ? PRO A 26 SER A 41 1 ? 16 HELX_P HELX_P3 3 SER A 49 ? ASN A 66 ? SER A 46 ASN A 63 1 ? 18 HELX_P HELX_P4 4 PRO A 71 ? SER A 89 ? PRO A 68 SER A 86 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A VAL 15 C ? ? ? 1_555 A MSE 16 N ? ? A VAL 12 A MSE 13 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A MSE 16 C ? ? ? 1_555 A TYR 17 N ? ? A MSE 13 A TYR 14 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A SER 59 C ? ? ? 1_555 A MSE 60 N A ? A SER 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A SER 59 C ? ? ? 1_555 A MSE 60 N B ? A SER 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale ? ? A MSE 60 C A ? ? 1_555 A LEU 61 N ? ? A MSE 57 A LEU 58 1_555 ? ? ? ? ? ? ? 1.338 ? covale6 covale ? ? A MSE 60 C B ? ? 1_555 A LEU 61 N ? ? A MSE 57 A LEU 58 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A GLU 63 C ? ? ? 1_555 A MSE 64 N B ? A GLU 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.334 ? covale8 covale ? ? A GLU 63 C ? ? ? 1_555 A MSE 64 N A ? A GLU 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.323 ? covale9 covale ? ? A MSE 64 C B ? ? 1_555 A ALA 65 N ? ? A MSE 61 A ALA 62 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale ? ? A MSE 64 C A ? ? 1_555 A ALA 65 N ? ? A MSE 61 A ALA 62 1_555 ? ? ? ? ? ? ? 1.334 ? covale11 covale ? ? A ARG 33 NH2 B ? ? 5_565 B SO4 . O3 ? ? A ARG 30 A SO4 87 1_555 ? ? ? ? ? ? ? 1.834 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 87' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 VAL A 28 ? VAL A 25 . ? 5_565 ? 2 AC1 9 PRO A 29 ? PRO A 26 . ? 5_565 ? 3 AC1 9 LYS A 30 ? LYS A 27 . ? 5_565 ? 4 AC1 9 ARG A 33 ? ARG A 30 . ? 5_565 ? 5 AC1 9 LYS A 34 ? LYS A 31 . ? 1_555 ? 6 AC1 9 HOH C . ? HOH A 106 . ? 1_555 ? 7 AC1 9 HOH C . ? HOH A 112 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 212 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 215 . ? 1_555 ? # _atom_sites.entry_id 2QSB _atom_sites.fract_transf_matrix[1][1] 0.019769 _atom_sites.fract_transf_matrix[1][2] 0.011414 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022827 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016868 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 VAL 5 2 2 VAL VAL A . n A 1 6 ARG 6 3 3 ARG ARG A . n A 1 7 VAL 7 4 4 VAL VAL A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 GLN 9 6 6 GLN GLN A . n A 1 10 ASN 10 7 7 ASN ASN A . n A 1 11 LEU 11 8 8 LEU LEU A . n A 1 12 PHE 12 9 9 PHE PHE A . n A 1 13 ASN 13 10 10 ASN ASN A . n A 1 14 GLU 14 11 11 GLU GLU A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 MSE 16 13 13 MSE MSE A . n A 1 17 TYR 17 14 14 TYR TYR A . n A 1 18 LEU 18 15 15 LEU LEU A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 ASP 20 17 17 ASP ASP A . n A 1 21 GLU 21 18 18 GLU GLU A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 SER 23 20 20 SER SER A . n A 1 24 GLN 24 21 21 GLN GLN A . n A 1 25 ASP 25 22 22 ASP ASP A . n A 1 26 ILE 26 23 23 ILE ILE A . n A 1 27 THR 27 24 24 THR THR A . n A 1 28 VAL 28 25 25 VAL VAL A . n A 1 29 PRO 29 26 26 PRO PRO A . n A 1 30 LYS 30 27 27 LYS LYS A . n A 1 31 ASN 31 28 28 ASN ASN A . n A 1 32 VAL 32 29 29 VAL VAL A . n A 1 33 ARG 33 30 30 ARG ARG A . n A 1 34 LYS 34 31 31 LYS LYS A . n A 1 35 VAL 35 32 32 VAL VAL A . n A 1 36 ALA 36 33 33 ALA ALA A . n A 1 37 GLN 37 34 34 GLN GLN A . n A 1 38 ASP 38 35 35 ASP ASP A . n A 1 39 SER 39 36 36 SER SER A . n A 1 40 LYS 40 37 37 LYS LYS A . n A 1 41 ALA 41 38 38 ALA ALA A . n A 1 42 LYS 42 39 39 LYS LYS A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 SER 44 41 41 SER SER A . n A 1 45 GLN 45 42 42 GLN GLN A . n A 1 46 GLU 46 43 43 GLU GLU A . n A 1 47 ASN 47 44 44 ASN ASN A . n A 1 48 GLU 48 45 45 GLU GLU A . n A 1 49 SER 49 46 46 SER SER A . n A 1 50 LEU 50 47 47 LEU LEU A . n A 1 51 ASP 51 48 48 ASP ASP A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 CYS 54 51 51 CYS CYS A . n A 1 55 ALA 55 52 52 ALA ALA A . n A 1 56 THR 56 53 53 THR THR A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 SER 59 56 56 SER SER A . n A 1 60 MSE 60 57 57 MSE MSE A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 ASP 62 59 59 ASP ASP A . n A 1 63 GLU 63 60 60 GLU GLU A . n A 1 64 MSE 64 61 61 MSE MSE A . n A 1 65 ALA 65 62 62 ALA ALA A . n A 1 66 ASN 66 63 63 ASN ASN A . n A 1 67 ASP 67 64 64 ASP ASP A . n A 1 68 PRO 68 65 65 PRO PRO A . n A 1 69 ASN 69 66 66 ASN ASN A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 PRO 71 68 68 PRO PRO A . n A 1 72 ALA 72 69 69 ALA ALA A . n A 1 73 HIS 73 70 70 HIS HIS A . n A 1 74 GLY 74 71 71 GLY GLY A . n A 1 75 ARG 75 72 72 ARG ARG A . n A 1 76 THR 76 73 73 THR THR A . n A 1 77 ASP 77 74 74 ASP ASP A . n A 1 78 LEU 78 75 75 LEU LEU A . n A 1 79 TYR 79 76 76 TYR TYR A . n A 1 80 THR 80 77 77 THR THR A . n A 1 81 ILE 81 78 78 ILE ILE A . n A 1 82 ILE 82 79 79 ILE ILE A . n A 1 83 SER 83 80 80 SER SER A . n A 1 84 LYS 84 81 81 LYS LYS A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 GLU 86 83 83 GLU GLU A . n A 1 87 ALA 87 84 84 ALA ALA A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 SER 89 86 86 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 87 1 SO4 SO4 A . C 3 HOH 1 88 1 HOH HOH A . C 3 HOH 2 89 2 HOH HOH A . C 3 HOH 3 90 3 HOH HOH A . C 3 HOH 4 91 4 HOH HOH A . C 3 HOH 5 92 5 HOH HOH A . C 3 HOH 6 93 6 HOH HOH A . C 3 HOH 7 94 7 HOH HOH A . C 3 HOH 8 95 8 HOH HOH A . C 3 HOH 9 96 9 HOH HOH A . C 3 HOH 10 97 10 HOH HOH A . C 3 HOH 11 98 11 HOH HOH A . C 3 HOH 12 99 12 HOH HOH A . C 3 HOH 13 100 13 HOH HOH A . C 3 HOH 14 101 14 HOH HOH A . C 3 HOH 15 102 15 HOH HOH A . C 3 HOH 16 103 16 HOH HOH A . C 3 HOH 17 104 17 HOH HOH A . C 3 HOH 18 105 18 HOH HOH A . C 3 HOH 19 106 19 HOH HOH A . C 3 HOH 20 107 20 HOH HOH A . C 3 HOH 21 108 21 HOH HOH A . C 3 HOH 22 109 22 HOH HOH A . C 3 HOH 23 110 23 HOH HOH A . C 3 HOH 24 111 24 HOH HOH A . C 3 HOH 25 112 25 HOH HOH A . C 3 HOH 26 113 26 HOH HOH A . C 3 HOH 27 114 27 HOH HOH A . C 3 HOH 28 115 28 HOH HOH A . C 3 HOH 29 116 29 HOH HOH A . C 3 HOH 30 117 30 HOH HOH A . C 3 HOH 31 118 31 HOH HOH A . C 3 HOH 32 119 32 HOH HOH A . C 3 HOH 33 120 33 HOH HOH A . C 3 HOH 34 121 34 HOH HOH A . C 3 HOH 35 122 35 HOH HOH A . C 3 HOH 36 123 36 HOH HOH A . C 3 HOH 37 124 37 HOH HOH A . C 3 HOH 38 125 38 HOH HOH A . C 3 HOH 39 126 39 HOH HOH A . C 3 HOH 40 127 40 HOH HOH A . C 3 HOH 41 128 41 HOH HOH A . C 3 HOH 42 129 42 HOH HOH A . C 3 HOH 43 130 43 HOH HOH A . C 3 HOH 44 131 44 HOH HOH A . C 3 HOH 45 132 45 HOH HOH A . C 3 HOH 46 133 46 HOH HOH A . C 3 HOH 47 134 47 HOH HOH A . C 3 HOH 48 135 48 HOH HOH A . C 3 HOH 49 136 49 HOH HOH A . C 3 HOH 50 137 50 HOH HOH A . C 3 HOH 51 138 51 HOH HOH A . C 3 HOH 52 139 52 HOH HOH A . C 3 HOH 53 140 53 HOH HOH A . C 3 HOH 54 141 54 HOH HOH A . C 3 HOH 55 142 55 HOH HOH A . C 3 HOH 56 143 56 HOH HOH A . C 3 HOH 57 144 57 HOH HOH A . C 3 HOH 58 145 58 HOH HOH A . C 3 HOH 59 146 59 HOH HOH A . C 3 HOH 60 147 60 HOH HOH A . C 3 HOH 61 148 61 HOH HOH A . C 3 HOH 62 149 62 HOH HOH A . C 3 HOH 63 150 63 HOH HOH A . C 3 HOH 64 151 64 HOH HOH A . C 3 HOH 65 152 65 HOH HOH A . C 3 HOH 66 153 66 HOH HOH A . C 3 HOH 67 154 67 HOH HOH A . C 3 HOH 68 155 68 HOH HOH A . C 3 HOH 69 156 69 HOH HOH A . C 3 HOH 70 157 70 HOH HOH A . C 3 HOH 71 158 71 HOH HOH A . C 3 HOH 72 159 72 HOH HOH A . C 3 HOH 73 160 73 HOH HOH A . C 3 HOH 74 161 74 HOH HOH A . C 3 HOH 75 162 75 HOH HOH A . C 3 HOH 76 163 76 HOH HOH A . C 3 HOH 77 164 77 HOH HOH A . C 3 HOH 78 165 78 HOH HOH A . C 3 HOH 79 166 79 HOH HOH A . C 3 HOH 80 167 80 HOH HOH A . C 3 HOH 81 168 81 HOH HOH A . C 3 HOH 82 169 82 HOH HOH A . C 3 HOH 83 170 83 HOH HOH A . C 3 HOH 84 171 84 HOH HOH A . C 3 HOH 85 172 85 HOH HOH A . C 3 HOH 86 173 86 HOH HOH A . C 3 HOH 87 174 87 HOH HOH A . C 3 HOH 88 175 88 HOH HOH A . C 3 HOH 89 176 89 HOH HOH A . C 3 HOH 90 177 90 HOH HOH A . C 3 HOH 91 178 91 HOH HOH A . C 3 HOH 92 179 92 HOH HOH A . C 3 HOH 93 180 93 HOH HOH A . C 3 HOH 94 181 94 HOH HOH A . C 3 HOH 95 182 95 HOH HOH A . C 3 HOH 96 183 96 HOH HOH A . C 3 HOH 97 184 97 HOH HOH A . C 3 HOH 98 185 98 HOH HOH A . C 3 HOH 99 186 99 HOH HOH A . C 3 HOH 100 187 100 HOH HOH A . C 3 HOH 101 188 101 HOH HOH A . C 3 HOH 102 189 102 HOH HOH A . C 3 HOH 103 190 103 HOH HOH A . C 3 HOH 104 191 104 HOH HOH A . C 3 HOH 105 192 105 HOH HOH A . C 3 HOH 106 193 106 HOH HOH A . C 3 HOH 107 194 107 HOH HOH A . C 3 HOH 108 195 108 HOH HOH A . C 3 HOH 109 196 109 HOH HOH A . C 3 HOH 110 197 110 HOH HOH A . C 3 HOH 111 198 111 HOH HOH A . C 3 HOH 112 199 112 HOH HOH A . C 3 HOH 113 200 113 HOH HOH A . C 3 HOH 114 201 114 HOH HOH A . C 3 HOH 115 202 115 HOH HOH A . C 3 HOH 116 203 116 HOH HOH A . C 3 HOH 117 204 117 HOH HOH A . C 3 HOH 118 205 118 HOH HOH A . C 3 HOH 119 206 119 HOH HOH A . C 3 HOH 120 207 120 HOH HOH A . C 3 HOH 121 208 121 HOH HOH A . C 3 HOH 122 209 122 HOH HOH A . C 3 HOH 123 210 123 HOH HOH A . C 3 HOH 124 211 124 HOH HOH A . C 3 HOH 125 212 125 HOH HOH A . C 3 HOH 126 213 126 HOH HOH A . C 3 HOH 127 214 127 HOH HOH A . C 3 HOH 128 215 128 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 16 A MSE 13 ? MET SELENOMETHIONINE 2 A MSE 60 A MSE 57 ? MET SELENOMETHIONINE 3 A MSE 64 A MSE 61 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 1.30 43.81 20467 0.300 0.000 1.600 657 0.200 0.000 1.000 2 1.30 43.81 20367 2.900 1.280 0.750 627 4.800 0.940 0.700 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 8.61 43.81 50 1.100 0.000 1.650 8 0.400 0.000 1.000 1 4.77 8.61 335 0.900 0.000 1.860 36 0.400 0.000 1.000 1 3.30 4.77 819 0.700 0.000 1.100 51 0.500 0.000 1.000 1 2.53 3.30 1529 0.500 0.000 1.230 71 0.300 0.000 1.000 1 2.04 2.53 2485 0.400 0.000 1.440 98 0.200 0.000 1.000 1 1.72 2.04 3643 0.300 0.000 1.850 118 0.200 0.000 1.000 1 1.48 1.72 5017 0.200 0.000 1.930 136 0.100 0.000 1.000 1 1.30 1.48 6589 0.200 0.000 2.020 139 0.100 0.000 1.000 2 8.61 43.81 50 5.200 3.060 0.550 8 4.400 2.400 0.400 2 4.77 8.61 335 3.700 3.640 0.420 36 4.600 2.520 0.360 2 3.30 4.77 819 3.800 2.820 0.520 51 6.400 1.500 0.580 2 2.53 3.30 1529 3.200 2.450 0.560 71 4.900 1.560 0.540 2 2.04 2.53 2485 3.000 1.830 0.630 96 4.400 1.090 0.660 2 1.72 2.04 3642 2.700 1.380 0.730 117 4.700 0.640 0.800 2 1.48 1.72 5014 2.700 0.920 0.870 136 4.600 0.480 0.970 2 1.30 1.48 6493 2.900 0.540 0.970 112 4.600 0.300 0.990 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se -0.861 -0.213 -0.150 13.81665 0.000 2 Se -0.691 -0.375 0.009 10.97325 0.000 3 Se -0.923 -0.398 -0.056 34.74163 0.000 4 Se -0.861 -0.213 -0.150 13.12774 -0.181 5 Se -0.691 -0.374 0.009 10.66146 -0.103 6 Se -0.922 -0.398 -0.056 36.44563 -0.094 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 8.61 43.81 58 0.830 8 0.832 50 0.830 4.77 8.61 371 0.890 36 0.785 335 0.901 3.30 4.77 870 0.840 51 0.691 819 0.850 2.53 3.30 1600 0.841 71 0.719 1529 0.847 2.04 2.53 2583 0.793 98 0.514 2485 0.804 1.72 2.04 3761 0.725 118 0.403 3643 0.735 1.48 1.72 5153 0.581 136 0.231 5017 0.590 1.30 1.48 6728 0.369 139 0.080 6589 0.375 # _pdbx_phasing_dm.entry_id 2QSB _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 23416 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 4.530 100.000 35.500 ? ? ? 0.936 ? ? 501 3.590 4.530 32.000 ? ? ? 0.949 ? ? 507 3.130 3.590 32.400 ? ? ? 0.947 ? ? 508 2.840 3.130 34.500 ? ? ? 0.943 ? ? 524 2.620 2.840 33.200 ? ? ? 0.939 ? ? 566 2.450 2.620 33.100 ? ? ? 0.940 ? ? 595 2.300 2.450 35.000 ? ? ? 0.942 ? ? 636 2.180 2.300 37.000 ? ? ? 0.941 ? ? 688 2.070 2.180 37.400 ? ? ? 0.941 ? ? 726 1.980 2.070 40.000 ? ? ? 0.936 ? ? 749 1.900 1.980 38.900 ? ? ? 0.925 ? ? 779 1.830 1.900 39.500 ? ? ? 0.922 ? ? 823 1.770 1.830 41.600 ? ? ? 0.912 ? ? 833 1.710 1.770 43.500 ? ? ? 0.907 ? ? 892 1.660 1.710 43.900 ? ? ? 0.894 ? ? 898 1.610 1.660 47.800 ? ? ? 0.895 ? ? 926 1.570 1.610 47.200 ? ? ? 0.896 ? ? 956 1.530 1.570 53.900 ? ? ? 0.875 ? ? 975 1.490 1.530 54.700 ? ? ? 0.863 ? ? 1005 1.460 1.490 55.000 ? ? ? 0.866 ? ? 1044 1.420 1.460 58.300 ? ? ? 0.847 ? ? 1051 1.390 1.420 62.300 ? ? ? 0.825 ? ? 1049 1.360 1.390 60.000 ? ? ? 0.848 ? ? 1121 1.340 1.360 68.600 ? ? ? 0.836 ? ? 1127 1.310 1.340 69.500 ? ? ? 0.830 ? ? 1107 1.290 1.310 78.500 ? ? ? 0.834 ? ? 1105 1.250 1.290 91.600 ? ? ? 0.587 ? ? 1725 # _phasing.method MAD # _phasing_MAD.entry_id 2QSB _phasing_MAD.pdbx_d_res_high 1.30 _phasing_MAD.pdbx_d_res_low 43.81 _phasing_MAD.pdbx_reflns 21124 _phasing_MAD.pdbx_fom 0.602 _phasing_MAD.pdbx_reflns_centric 657 _phasing_MAD.pdbx_fom_centric 0.398 _phasing_MAD.pdbx_reflns_acentric 20467 _phasing_MAD.pdbx_fom_acentric 0.608 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MLPHARE . ? other 'Z.Otwinowski or E.Dodson' 'ccp4@dl.ac.uk, ccp4@yorvic.york.ac.uk' phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 DM 5.0 ? program 'K. Cowtan' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 7 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 9 HKL-3000 . ? ? ? ? phasing ? ? ? 10 SHELXD . ? ? ? ? phasing ? ? ? 11 SHELXE . ? ? ? ? 'model building' ? ? ? 12 SOLVE . ? ? ? ? phasing ? ? ? 13 RESOLVE . ? ? ? ? phasing ? ? ? 14 ARP/wARP . ? ? ? ? 'model building' ? ? ? 15 CCP4 . ? ? ? ? phasing ? ? ? 16 O . ? ? ? ? 'model building' ? ? ? 17 Coot . ? ? ? ? 'model building' ? ? ? 18 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 SEE REMARK 350 FOR THE PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS POLYPEPTIDE IS UNKNOWN. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #