data_2QYP # _entry.id 2QYP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QYP RCSB RCSB044211 WWPDB D_1000044211 # _pdbx_database_status.entry_id 2QYP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-08-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rossmann, M.' 1 'Saenger, W.' 2 'Maier, T.' 3 # _citation.id primary _citation.title 'Crystal structures of human saposins C and d: implications for lipid recognition and membrane interactions.' _citation.journal_abbrev Structure _citation.journal_volume 16 _citation.page_first 809 _citation.page_last 817 _citation.year 2008 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18462685 _citation.pdbx_database_id_DOI 10.1016/j.str.2008.02.016 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Rossmann, M.' 1 primary 'Schultz-Heienbrok, R.' 2 primary 'Behlke, J.' 3 primary 'Remmel, N.' 4 primary 'Alings, C.' 5 primary 'Sandhoff, K.' 6 primary 'Saenger, W.' 7 primary 'Maier, T.' 8 # _cell.length_a 57.008 _cell.length_b 88.904 _cell.length_c 93.465 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2QYP _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 2QYP _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 20 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Proactivator polypeptide' _entity.formula_weight 10378.861 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Saposin-C Domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AYVSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHL CSGTRHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;AYVSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHL CSGTRHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 TYR n 1 3 VAL n 1 4 SER n 1 5 ASP n 1 6 VAL n 1 7 TYR n 1 8 CYS n 1 9 GLU n 1 10 VAL n 1 11 CYS n 1 12 GLU n 1 13 PHE n 1 14 LEU n 1 15 VAL n 1 16 LYS n 1 17 GLU n 1 18 VAL n 1 19 THR n 1 20 LYS n 1 21 LEU n 1 22 ILE n 1 23 ASP n 1 24 ASN n 1 25 ASN n 1 26 LYS n 1 27 THR n 1 28 GLU n 1 29 LYS n 1 30 GLU n 1 31 ILE n 1 32 LEU n 1 33 ASP n 1 34 ALA n 1 35 PHE n 1 36 ASP n 1 37 LYS n 1 38 MET n 1 39 CYS n 1 40 SER n 1 41 LYS n 1 42 LEU n 1 43 PRO n 1 44 LYS n 1 45 SER n 1 46 LEU n 1 47 SER n 1 48 GLU n 1 49 GLU n 1 50 CYS n 1 51 GLN n 1 52 GLU n 1 53 VAL n 1 54 VAL n 1 55 ASP n 1 56 THR n 1 57 TYR n 1 58 GLY n 1 59 SER n 1 60 SER n 1 61 ILE n 1 62 LEU n 1 63 SER n 1 64 ILE n 1 65 LEU n 1 66 LEU n 1 67 GLU n 1 68 GLU n 1 69 VAL n 1 70 SER n 1 71 PRO n 1 72 GLU n 1 73 LEU n 1 74 VAL n 1 75 CYS n 1 76 SER n 1 77 MET n 1 78 LEU n 1 79 HIS n 1 80 LEU n 1 81 CYS n 1 82 SER n 1 83 GLY n 1 84 THR n 1 85 ARG n 1 86 HIS n 1 87 HIS n 1 88 HIS n 1 89 HIS n 1 90 HIS n 1 91 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'PSAP, GLBA, SAP1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain GS115 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPIC9K _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAP_HUMAN _struct_ref.pdbx_db_accession P07602 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSG TR ; _struct_ref.pdbx_align_begin 311 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QYP A 4 ? 85 ? P07602 311 ? 392 ? 1 82 2 1 2QYP B 4 ? 85 ? P07602 311 ? 392 ? 1 82 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QYP ALA A 1 ? UNP P07602 ? ? 'EXPRESSION TAG' -2 1 1 2QYP TYR A 2 ? UNP P07602 ? ? 'EXPRESSION TAG' -1 2 1 2QYP VAL A 3 ? UNP P07602 ? ? 'EXPRESSION TAG' 0 3 1 2QYP HIS A 86 ? UNP P07602 ? ? 'EXPRESSION TAG' 83 4 1 2QYP HIS A 87 ? UNP P07602 ? ? 'EXPRESSION TAG' 84 5 1 2QYP HIS A 88 ? UNP P07602 ? ? 'EXPRESSION TAG' 85 6 1 2QYP HIS A 89 ? UNP P07602 ? ? 'EXPRESSION TAG' 86 7 1 2QYP HIS A 90 ? UNP P07602 ? ? 'EXPRESSION TAG' 87 8 1 2QYP HIS A 91 ? UNP P07602 ? ? 'EXPRESSION TAG' 88 9 2 2QYP ALA B 1 ? UNP P07602 ? ? 'EXPRESSION TAG' -2 10 2 2QYP TYR B 2 ? UNP P07602 ? ? 'EXPRESSION TAG' -1 11 2 2QYP VAL B 3 ? UNP P07602 ? ? 'EXPRESSION TAG' 0 12 2 2QYP HIS B 86 ? UNP P07602 ? ? 'EXPRESSION TAG' 83 13 2 2QYP HIS B 87 ? UNP P07602 ? ? 'EXPRESSION TAG' 84 14 2 2QYP HIS B 88 ? UNP P07602 ? ? 'EXPRESSION TAG' 85 15 2 2QYP HIS B 89 ? UNP P07602 ? ? 'EXPRESSION TAG' 86 16 2 2QYP HIS B 90 ? UNP P07602 ? ? 'EXPRESSION TAG' 87 17 2 2QYP HIS B 91 ? UNP P07602 ? ? 'EXPRESSION TAG' 88 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2QYP _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details ;20 mM NaAcetate, 200 mM ammonium sulfate, 30% (v/v) pentaerythriol ethoxylate 15/4, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2003-10-22 _diffrn_detector.details 'Osmic MaxFlux' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54179 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR571' _diffrn_source.pdbx_wavelength_list 1.54179 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2QYP _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 3 _reflns.d_resolution_high 2.45 _reflns.d_resolution_low 32.2 _reflns.number_all 8971 _reflns.number_obs 8971 _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 17 _reflns.B_iso_Wilson_estimate 76.9 _reflns.pdbx_redundancy 2.89 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.45 _reflns_shell.d_res_low 2.54 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_Rsym_value 0.46 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all 898 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2QYP _refine.ls_d_res_high 2.450 _refine.ls_d_res_low 28.500 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 91.5 _refine.ls_number_reflns_obs 7875 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.232 _refine.ls_R_factor_R_work 0.229 _refine.ls_R_factor_R_free 0.290 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 548 _refine.B_iso_mean 70.279 _refine.aniso_B[1][1] 0.410 _refine.aniso_B[2][2] -0.040 _refine.aniso_B[3][3] -0.380 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.910 _refine.pdbx_overall_ESU_R 0.386 _refine.pdbx_overall_ESU_R_Free 0.296 _refine.overall_SU_ML 0.219 _refine.overall_SU_B 9.484 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 2 _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1242 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1242 _refine_hist.d_res_high 2.450 _refine_hist.d_res_low 28.500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1263 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1709 1.300 2.016 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 157 5.527 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 49 40.997 27.755 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 254 18.866 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 210 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 884 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 569 0.228 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 901 0.298 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 9 0.127 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 41 0.228 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 1 0.224 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 821 0.787 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1304 1.354 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 490 1.892 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 405 3.070 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.45 _refine_ls_shell.d_res_low 2.54 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 548 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.R_factor_R_free 0.29 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 390 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 582 _refine_ls_shell.number_reflns_obs 7875 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QYP _struct.title 'Orthorhombic Crystal Structure of Human Saposin C Dimer in Open Conformation' _struct.pdbx_descriptor 'Proactivator polypeptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QYP _struct_keywords.text ;saposin, activator protein, sap, Alternative splicing, Disease mutation, Gaucher disease, Glycoprotein, GM2-gangliosidosis, Lipid metabolism, Lysosome, Metachromatic leukodystrophy, Sphingolipid metabolism, LIPID BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? ASP A 23 ? SER A 1 ASP A 20 1 ? 20 HELX_P HELX_P2 2 ASN A 24 ? LYS A 41 ? ASN A 21 LYS A 38 1 ? 18 HELX_P HELX_P3 3 GLU A 49 ? GLU A 68 ? GLU A 46 GLU A 65 1 ? 20 HELX_P HELX_P4 4 SER A 70 ? MET A 77 ? SER A 67 MET A 74 1 ? 8 HELX_P HELX_P5 5 ALA B 1 ? ASP B 23 ? ALA B -2 ASP B 20 1 ? 23 HELX_P HELX_P6 6 ASN B 24 ? LYS B 41 ? ASN B 21 LYS B 38 1 ? 18 HELX_P HELX_P7 7 PRO B 43 ? GLY B 58 ? PRO B 40 GLY B 55 1 ? 16 HELX_P HELX_P8 8 SER B 60 ? GLU B 68 ? SER B 57 GLU B 65 1 ? 9 HELX_P HELX_P9 9 SER B 70 ? LEU B 78 ? SER B 67 LEU B 75 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 5 A CYS 78 1_555 ? ? ? ? ? ? ? 2.031 ? disulf2 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 75 SG ? ? A CYS 8 A CYS 72 1_555 ? ? ? ? ? ? ? 2.047 ? disulf3 disulf ? ? A CYS 39 SG ? ? ? 1_555 A CYS 50 SG ? ? A CYS 36 A CYS 47 1_555 ? ? ? ? ? ? ? 2.029 ? disulf4 disulf ? ? B CYS 8 SG ? ? ? 1_555 B CYS 81 SG ? ? B CYS 5 B CYS 78 1_555 ? ? ? ? ? ? ? 2.013 ? disulf5 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 75 SG ? ? B CYS 8 B CYS 72 1_555 ? ? ? ? ? ? ? 2.023 ? disulf6 disulf ? ? B CYS 39 SG ? ? ? 1_555 B CYS 50 SG ? ? B CYS 36 B CYS 47 1_555 ? ? ? ? ? ? ? 2.023 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 43 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 40 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 LYS _struct_mon_prot_cis.pdbx_label_seq_id_2 44 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 LYS _struct_mon_prot_cis.pdbx_auth_seq_id_2 41 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.78 # _atom_sites.entry_id 2QYP _atom_sites.fract_transf_matrix[1][1] 0.017541 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011248 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010699 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -2 ? ? ? A . n A 1 2 TYR 2 -1 ? ? ? A . n A 1 3 VAL 3 0 ? ? ? A . n A 1 4 SER 4 1 1 SER SER A . n A 1 5 ASP 5 2 2 ASP ASP A . n A 1 6 VAL 6 3 3 VAL VAL A . n A 1 7 TYR 7 4 4 TYR TYR A . n A 1 8 CYS 8 5 5 CYS CYS A . n A 1 9 GLU 9 6 6 GLU GLU A . n A 1 10 VAL 10 7 7 VAL VAL A . n A 1 11 CYS 11 8 8 CYS CYS A . n A 1 12 GLU 12 9 9 GLU GLU A . n A 1 13 PHE 13 10 10 PHE PHE A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 LYS 16 13 13 LYS LYS A . n A 1 17 GLU 17 14 14 GLU GLU A . n A 1 18 VAL 18 15 15 VAL VAL A . n A 1 19 THR 19 16 16 THR THR A . n A 1 20 LYS 20 17 17 LYS LYS A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 ILE 22 19 19 ILE ILE A . n A 1 23 ASP 23 20 20 ASP ASP A . n A 1 24 ASN 24 21 21 ASN ASN A . n A 1 25 ASN 25 22 22 ASN ASN A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 THR 27 24 24 THR THR A . n A 1 28 GLU 28 25 25 GLU GLU A . n A 1 29 LYS 29 26 26 LYS LYS A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 ILE 31 28 28 ILE ILE A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 ASP 33 30 30 ASP ASP A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 PHE 35 32 32 PHE PHE A . n A 1 36 ASP 36 33 33 ASP ASP A . n A 1 37 LYS 37 34 34 LYS LYS A . n A 1 38 MET 38 35 35 MET MET A . n A 1 39 CYS 39 36 36 CYS CYS A . n A 1 40 SER 40 37 37 SER SER A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 PRO 43 40 40 PRO PRO A . n A 1 44 LYS 44 41 41 LYS LYS A . n A 1 45 SER 45 42 42 SER SER A . n A 1 46 LEU 46 43 43 LEU LEU A . n A 1 47 SER 47 44 44 SER SER A . n A 1 48 GLU 48 45 45 GLU GLU A . n A 1 49 GLU 49 46 46 GLU GLU A . n A 1 50 CYS 50 47 47 CYS CYS A . n A 1 51 GLN 51 48 48 GLN GLN A . n A 1 52 GLU 52 49 49 GLU GLU A . n A 1 53 VAL 53 50 50 VAL VAL A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 ASP 55 52 52 ASP ASP A . n A 1 56 THR 56 53 53 THR THR A . n A 1 57 TYR 57 54 54 TYR TYR A . n A 1 58 GLY 58 55 55 GLY GLY A . n A 1 59 SER 59 56 56 SER SER A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 ILE 61 58 58 ILE ILE A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 SER 63 60 60 SER SER A . n A 1 64 ILE 64 61 61 ILE ILE A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 GLU 68 65 65 GLU GLU A . n A 1 69 VAL 69 66 66 VAL VAL A . n A 1 70 SER 70 67 67 SER SER A . n A 1 71 PRO 71 68 68 PRO PRO A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 CYS 75 72 72 CYS CYS A . n A 1 76 SER 76 73 73 SER SER A . n A 1 77 MET 77 74 74 MET MET A . n A 1 78 LEU 78 75 75 LEU LEU A . n A 1 79 HIS 79 76 76 HIS HIS A . n A 1 80 LEU 80 77 77 LEU LEU A . n A 1 81 CYS 81 78 78 CYS CYS A . n A 1 82 SER 82 79 ? ? ? A . n A 1 83 GLY 83 80 ? ? ? A . n A 1 84 THR 84 81 ? ? ? A . n A 1 85 ARG 85 82 ? ? ? A . n A 1 86 HIS 86 83 ? ? ? A . n A 1 87 HIS 87 84 ? ? ? A . n A 1 88 HIS 88 85 ? ? ? A . n A 1 89 HIS 89 86 ? ? ? A . n A 1 90 HIS 90 87 ? ? ? A . n A 1 91 HIS 91 88 ? ? ? A . n B 1 1 ALA 1 -2 -2 ALA ALA B . n B 1 2 TYR 2 -1 -1 TYR TYR B . n B 1 3 VAL 3 0 0 VAL VAL B . n B 1 4 SER 4 1 1 SER SER B . n B 1 5 ASP 5 2 2 ASP ASP B . n B 1 6 VAL 6 3 3 VAL VAL B . n B 1 7 TYR 7 4 4 TYR TYR B . n B 1 8 CYS 8 5 5 CYS CYS B . n B 1 9 GLU 9 6 6 GLU GLU B . n B 1 10 VAL 10 7 7 VAL VAL B . n B 1 11 CYS 11 8 8 CYS CYS B . n B 1 12 GLU 12 9 9 GLU GLU B . n B 1 13 PHE 13 10 10 PHE PHE B . n B 1 14 LEU 14 11 11 LEU LEU B . n B 1 15 VAL 15 12 12 VAL VAL B . n B 1 16 LYS 16 13 13 LYS LYS B . n B 1 17 GLU 17 14 14 GLU GLU B . n B 1 18 VAL 18 15 15 VAL VAL B . n B 1 19 THR 19 16 16 THR THR B . n B 1 20 LYS 20 17 17 LYS LYS B . n B 1 21 LEU 21 18 18 LEU LEU B . n B 1 22 ILE 22 19 19 ILE ILE B . n B 1 23 ASP 23 20 20 ASP ASP B . n B 1 24 ASN 24 21 21 ASN ASN B . n B 1 25 ASN 25 22 22 ASN ASN B . n B 1 26 LYS 26 23 23 LYS LYS B . n B 1 27 THR 27 24 24 THR THR B . n B 1 28 GLU 28 25 25 GLU GLU B . n B 1 29 LYS 29 26 26 LYS LYS B . n B 1 30 GLU 30 27 27 GLU GLU B . n B 1 31 ILE 31 28 28 ILE ILE B . n B 1 32 LEU 32 29 29 LEU LEU B . n B 1 33 ASP 33 30 30 ASP ASP B . n B 1 34 ALA 34 31 31 ALA ALA B . n B 1 35 PHE 35 32 32 PHE PHE B . n B 1 36 ASP 36 33 33 ASP ASP B . n B 1 37 LYS 37 34 34 LYS LYS B . n B 1 38 MET 38 35 35 MET MET B . n B 1 39 CYS 39 36 36 CYS CYS B . n B 1 40 SER 40 37 37 SER SER B . n B 1 41 LYS 41 38 38 LYS LYS B . n B 1 42 LEU 42 39 39 LEU LEU B . n B 1 43 PRO 43 40 40 PRO PRO B . n B 1 44 LYS 44 41 41 LYS LYS B . n B 1 45 SER 45 42 42 SER SER B . n B 1 46 LEU 46 43 43 LEU LEU B . n B 1 47 SER 47 44 44 SER SER B . n B 1 48 GLU 48 45 45 GLU GLU B . n B 1 49 GLU 49 46 46 GLU GLU B . n B 1 50 CYS 50 47 47 CYS CYS B . n B 1 51 GLN 51 48 48 GLN GLN B . n B 1 52 GLU 52 49 49 GLU GLU B . n B 1 53 VAL 53 50 50 VAL VAL B . n B 1 54 VAL 54 51 51 VAL VAL B . n B 1 55 ASP 55 52 52 ASP ASP B . n B 1 56 THR 56 53 53 THR THR B . n B 1 57 TYR 57 54 54 TYR TYR B . n B 1 58 GLY 58 55 55 GLY GLY B . n B 1 59 SER 59 56 56 SER SER B . n B 1 60 SER 60 57 57 SER SER B . n B 1 61 ILE 61 58 58 ILE ILE B . n B 1 62 LEU 62 59 59 LEU LEU B . n B 1 63 SER 63 60 60 SER SER B . n B 1 64 ILE 64 61 61 ILE ILE B . n B 1 65 LEU 65 62 62 LEU LEU B . n B 1 66 LEU 66 63 63 LEU LEU B . n B 1 67 GLU 67 64 64 GLU GLU B . n B 1 68 GLU 68 65 65 GLU GLU B . n B 1 69 VAL 69 66 66 VAL VAL B . n B 1 70 SER 70 67 67 SER SER B . n B 1 71 PRO 71 68 68 PRO PRO B . n B 1 72 GLU 72 69 69 GLU GLU B . n B 1 73 LEU 73 70 70 LEU LEU B . n B 1 74 VAL 74 71 71 VAL VAL B . n B 1 75 CYS 75 72 72 CYS CYS B . n B 1 76 SER 76 73 73 SER SER B . n B 1 77 MET 77 74 74 MET MET B . n B 1 78 LEU 78 75 75 LEU LEU B . n B 1 79 HIS 79 76 76 HIS HIS B . n B 1 80 LEU 80 77 77 LEU LEU B . n B 1 81 CYS 81 78 78 CYS CYS B . n B 1 82 SER 82 79 ? ? ? B . n B 1 83 GLY 83 80 ? ? ? B . n B 1 84 THR 84 81 ? ? ? B . n B 1 85 ARG 85 82 ? ? ? B . n B 1 86 HIS 86 83 ? ? ? B . n B 1 87 HIS 87 84 ? ? ? B . n B 1 88 HIS 88 85 ? ? ? B . n B 1 89 HIS 89 86 ? ? ? B . n B 1 90 HIS 90 87 ? ? ? B . n B 1 91 HIS 91 88 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 3360 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-29 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # _pdbx_phasing_MR.entry_id 2QYP _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 32.210 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 32.210 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOLREP . ? other 'A. Vagin' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 1 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 4 DENZO . ? ? ? ? 'data reduction' ? ? ? 5 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 6 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 39 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 40 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 40 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.35 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 9.05 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 33 ? ? 84.65 -48.67 2 1 PRO A 40 ? ? -20.71 -174.04 3 1 LYS A 41 ? ? 98.49 -121.18 4 1 HIS A 76 ? ? 71.62 32.63 5 1 SER B 42 ? ? -43.48 -70.39 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA -2 ? A ALA 1 2 1 Y 1 A TYR -1 ? A TYR 2 3 1 Y 1 A VAL 0 ? A VAL 3 4 1 Y 1 A SER 79 ? A SER 82 5 1 Y 1 A GLY 80 ? A GLY 83 6 1 Y 1 A THR 81 ? A THR 84 7 1 Y 1 A ARG 82 ? A ARG 85 8 1 Y 1 A HIS 83 ? A HIS 86 9 1 Y 1 A HIS 84 ? A HIS 87 10 1 Y 1 A HIS 85 ? A HIS 88 11 1 Y 1 A HIS 86 ? A HIS 89 12 1 Y 1 A HIS 87 ? A HIS 90 13 1 Y 1 A HIS 88 ? A HIS 91 14 1 Y 1 B SER 79 ? B SER 82 15 1 Y 1 B GLY 80 ? B GLY 83 16 1 Y 1 B THR 81 ? B THR 84 17 1 Y 1 B ARG 82 ? B ARG 85 18 1 Y 1 B HIS 83 ? B HIS 86 19 1 Y 1 B HIS 84 ? B HIS 87 20 1 Y 1 B HIS 85 ? B HIS 88 21 1 Y 1 B HIS 86 ? B HIS 89 22 1 Y 1 B HIS 87 ? B HIS 90 23 1 Y 1 B HIS 88 ? B HIS 91 #