HEADER RECOMBINATION/DNA 21-AUG-07 2R0Q TITLE CRYSTAL STRUCTURE OF A SERINE RECOMBINASE- DNA REGULATORY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 31-MER; COMPND 3 CHAIN: A, G; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SITE II DNA STRAND 1; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 31-MER; COMPND 8 CHAIN: B, H; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: SITE II DNA STRAND 2; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PUTATIVE TRANSPOSON TN552 DNA-INVERTASE BIN3; COMPND 13 CHAIN: C, D, E, F; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 7 ORGANISM_TAXID: 1280; SOURCE 8 STRAIN: NCTC 9789; SOURCE 9 GENE: BIN3; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PSA1122 KEYWDS SITE-SPECIFIC RECOMBINASE, RESOLVASE, DNA-BINDING PROTEIN, PROTEIN- KEYWDS 2 DNA COMPLEX, DNA INTEGRATION, DNA INVERTASE, DNA RECOMBINATION, KEYWDS 3 PLASMID, TRANSPOSABLE ELEMENT, TRANSPOSITION, RECOMBINATION-DNA KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.RICE,K.W.MOUW REVDAT 4 21-FEB-24 2R0Q 1 REMARK SEQADV REVDAT 3 24-FEB-09 2R0Q 1 VERSN REVDAT 2 01-JUL-08 2R0Q 1 JRNL REVDAT 1 01-APR-08 2R0Q 0 JRNL AUTH K.W.MOUW,S.J.ROWLAND,M.M.GAJJAR,M.R.BOOCOCK,W.M.STARK, JRNL AUTH 2 P.A.RICE JRNL TITL ARCHITECTURE OF A SERINE RECOMBINASE-DNA REGULATORY COMPLEX. JRNL REF MOL.CELL V. 30 145 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18439894 JRNL DOI 10.1016/J.MOLCEL.2008.02.023 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 48157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2407 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6160 REMARK 3 NUCLEIC ACID ATOMS : 2530 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.19700 REMARK 3 B22 (A**2) : -13.70500 REMARK 3 B33 (A**2) : 26.90200 REMARK 3 B12 (A**2) : -11.54700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.353 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-06; 08-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91977, 0.91988; 1.77 REMARK 200 MONOCHROMATOR : SI 111; SI 111 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55122 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.210 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS CONTAINING 25 MM TRIS AND 100 MM REMARK 280 AMMONIUM SULFATE WERE MIXED 1:1 WITH THE SIN-DNA COMPLEX REMARK 280 SOLUTION, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 210.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.03333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 157.55000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.51667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 262.58333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, H, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN C 35 REMARK 465 SER C 36 REMARK 465 GLY C 37 REMARK 465 LYS C 38 REMARK 465 SER C 39 REMARK 465 ILE C 40 REMARK 465 GLU C 41 REMARK 465 LEU C 201 REMARK 465 SER C 202 REMARK 465 SER C 203 REMARK 465 HIS C 204 REMARK 465 HIS C 205 REMARK 465 HIS C 206 REMARK 465 HIS C 207 REMARK 465 HIS C 208 REMARK 465 HIS C 209 REMARK 465 GLN D 35 REMARK 465 SER D 36 REMARK 465 GLY D 37 REMARK 465 LYS D 38 REMARK 465 SER D 39 REMARK 465 ILE D 40 REMARK 465 GLU D 41 REMARK 465 ARG D 130 REMARK 465 ARG D 131 REMARK 465 LEU D 201 REMARK 465 SER D 202 REMARK 465 SER D 203 REMARK 465 HIS D 204 REMARK 465 HIS D 205 REMARK 465 HIS D 206 REMARK 465 HIS D 207 REMARK 465 HIS D 208 REMARK 465 HIS D 209 REMARK 465 GLN E 35 REMARK 465 SER E 36 REMARK 465 GLY E 37 REMARK 465 LYS E 38 REMARK 465 SER E 39 REMARK 465 ILE E 40 REMARK 465 GLU E 41 REMARK 465 LEU E 201 REMARK 465 SER E 202 REMARK 465 SER E 203 REMARK 465 HIS E 204 REMARK 465 HIS E 205 REMARK 465 HIS E 206 REMARK 465 HIS E 207 REMARK 465 HIS E 208 REMARK 465 HIS E 209 REMARK 465 GLN F 35 REMARK 465 SER F 36 REMARK 465 GLY F 37 REMARK 465 LYS F 38 REMARK 465 SER F 39 REMARK 465 ILE F 40 REMARK 465 GLU F 41 REMARK 465 ARG F 130 REMARK 465 ARG F 131 REMARK 465 LEU F 201 REMARK 465 SER F 202 REMARK 465 SER F 203 REMARK 465 HIS F 204 REMARK 465 HIS F 205 REMARK 465 HIS F 206 REMARK 465 HIS F 207 REMARK 465 HIS F 208 REMARK 465 HIS F 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER D 128 OG REMARK 470 LYS D 129 CG CD CE NZ REMARK 470 GLN D 132 CG CD OE1 NE2 REMARK 470 GLN D 134 CG CD OE1 NE2 REMARK 470 GLN D 137 CG CD OE1 NE2 REMARK 470 VAL D 138 CG1 CG2 REMARK 470 LYS D 140 CG CD CE NZ REMARK 470 GLU D 141 CG CD OE1 OE2 REMARK 470 LYS D 142 CG CD CE NZ REMARK 470 VAL D 144 CG1 CG2 REMARK 470 TYR D 145 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 146 CG CD CE NZ REMARK 470 SER F 128 OG REMARK 470 LYS F 129 CG CD CE NZ REMARK 470 GLN F 132 CG CD OE1 NE2 REMARK 470 GLN F 134 CG CD OE1 NE2 REMARK 470 GLN F 137 CG CD OE1 NE2 REMARK 470 VAL F 138 CG1 CG2 REMARK 470 LYS F 140 CG CD CE NZ REMARK 470 GLU F 141 CG CD OE1 OE2 REMARK 470 LYS F 142 CG CD CE NZ REMARK 470 VAL F 144 CG1 CG2 REMARK 470 TYR F 145 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS F 146 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN C 79 OD1 ASP C 83 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 46 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC H 46 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 ARG C 131 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG C 131 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG C 131 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG E 131 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG E 131 NE - CZ - NH1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG E 131 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 7 116.20 -165.07 REMARK 500 ASP C 12 71.33 -119.52 REMARK 500 ASN C 14 -30.93 -150.13 REMARK 500 LEU C 15 -89.08 51.52 REMARK 500 GLU C 16 -56.01 -27.80 REMARK 500 ASN C 21 -52.87 -29.05 REMARK 500 ARG C 43 70.36 49.63 REMARK 500 MET C 55 121.37 -36.87 REMARK 500 ILE C 64 -57.09 -29.05 REMARK 500 ASN C 72 -36.17 -39.26 REMARK 500 GLU C 98 -34.76 -36.78 REMARK 500 ASP C 106 -75.35 -81.50 REMARK 500 PHE C 108 -77.84 -48.97 REMARK 500 GLN C 115 -83.40 -44.45 REMARK 500 ILE C 116 -61.17 -26.21 REMARK 500 GLU C 122 22.23 -69.81 REMARK 500 ARG C 125 -15.96 -49.16 REMARK 500 SER C 128 -91.12 -57.53 REMARK 500 LYS C 129 -30.77 -38.50 REMARK 500 SER C 153 159.74 174.88 REMARK 500 ASN C 155 -40.48 75.90 REMARK 500 ALA C 156 137.98 -32.76 REMARK 500 LYS C 157 -76.82 -38.51 REMARK 500 HIS C 197 7.05 -56.62 REMARK 500 ARG D 7 115.38 -164.21 REMARK 500 ASN D 14 -31.38 -149.53 REMARK 500 LEU D 15 -89.23 51.83 REMARK 500 GLU D 16 -55.87 -28.04 REMARK 500 LEU D 19 -70.53 -48.62 REMARK 500 ARG D 43 70.52 48.24 REMARK 500 MET D 55 123.84 -32.88 REMARK 500 LEU D 93 58.83 -114.60 REMARK 500 GLN D 123 -14.50 -46.42 REMARK 500 SER D 128 76.43 -106.68 REMARK 500 LYS D 142 39.02 -157.91 REMARK 500 SER D 153 159.44 172.03 REMARK 500 ASN D 155 -41.23 77.04 REMARK 500 ALA D 156 136.97 -32.65 REMARK 500 LYS D 157 -77.26 -37.48 REMARK 500 ARG E 7 115.76 -166.03 REMARK 500 ASP E 12 71.31 -118.72 REMARK 500 ASN E 14 -30.14 -150.70 REMARK 500 LEU E 15 -88.47 50.78 REMARK 500 GLU E 16 -55.36 -28.28 REMARK 500 LEU E 105 -42.24 -29.53 REMARK 500 ASP E 106 -78.69 -63.72 REMARK 500 PHE E 108 -75.26 -48.93 REMARK 500 GLN E 115 -81.37 -46.51 REMARK 500 ILE E 116 -61.80 -27.40 REMARK 500 GLU E 122 13.70 -68.76 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG A 14 0.07 SIDE CHAIN REMARK 500 DG A 17 0.05 SIDE CHAIN REMARK 500 DG G 14 0.07 SIDE CHAIN REMARK 500 DG G 15 0.05 SIDE CHAIN REMARK 500 DC H 46 0.06 SIDE CHAIN REMARK 500 TYR E 71 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GDT RELATED DB: PDB REMARK 900 GAMMA DELTA RESOLVASE DIMER BOUND TO UNCLEAVED SITE I DNA REMARK 900 RELATED ID: 2RSL RELATED DB: PDB REMARK 900 GAMMA DELTA RESOLVASE CATALYTIC DOMAIN REMARK 900 RELATED ID: 1ZR4 RELATED DB: PDB REMARK 900 SYNAPTIC GAMMA DELTA RESOLVASE TETRAMER BOUND TO TWO CLEAVED SITE I REMARK 900 DNAS REMARK 900 RELATED ID: 2GM5 RELATED DB: PDB REMARK 900 AN ACTIVATED TRUNCATED GAMMA DELTA RESOLVASE TETRAMER REMARK 900 RELATED ID: 2GM4 RELATED DB: PDB REMARK 900 AN ACTIVATED, TETRAMERIC GAMMA DELTA RESOLVASE:HIN CHIMERA BOUND TO REMARK 900 TWO CLEAVED SITE I DNAS DBREF 2R0Q C 1 202 UNP P20384 BIN3_STAAU 1 202 DBREF 2R0Q D 1 202 UNP P20384 BIN3_STAAU 1 202 DBREF 2R0Q E 1 202 UNP P20384 BIN3_STAAU 1 202 DBREF 2R0Q F 1 202 UNP P20384 BIN3_STAAU 1 202 DBREF 2R0Q A 1 31 PDB 2R0Q 2R0Q 1 31 DBREF 2R0Q B 32 62 PDB 2R0Q 2R0Q 32 62 DBREF 2R0Q G 1 31 PDB 2R0Q 2R0Q 1 31 DBREF 2R0Q H 32 62 PDB 2R0Q 2R0Q 32 62 SEQADV 2R0Q SER C 203 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS C 204 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS C 205 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS C 206 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS C 207 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS C 208 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS C 209 UNP P20384 EXPRESSION TAG SEQADV 2R0Q SER D 203 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS D 204 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS D 205 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS D 206 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS D 207 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS D 208 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS D 209 UNP P20384 EXPRESSION TAG SEQADV 2R0Q SER E 203 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS E 204 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS E 205 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS E 206 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS E 207 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS E 208 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS E 209 UNP P20384 EXPRESSION TAG SEQADV 2R0Q SER F 203 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS F 204 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS F 205 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS F 206 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS F 207 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS F 208 UNP P20384 EXPRESSION TAG SEQADV 2R0Q HIS F 209 UNP P20384 EXPRESSION TAG SEQRES 1 A 31 DA DA DC DG DT DA DT DG DA DT DT DA DG SEQRES 2 A 31 DG DG DT DG DT DA DT DA DT DT DA DA DT SEQRES 3 A 31 DT DT DA DT DA SEQRES 1 B 31 DT DA DA DA DT DT DA DA DT DA DT DA DC SEQRES 2 B 31 DA DC DC DC DT DA DA DT DC DA DT DA DC SEQRES 3 B 31 DG DT DT DT DA SEQRES 1 G 31 DA DA DC DG DT DA DT DG DA DT DT DA DG SEQRES 2 G 31 DG DG DT DG DT DA DT DA DT DT DA DA DT SEQRES 3 G 31 DT DT DA DT DA SEQRES 1 H 31 DT DA DA DA DT DT DA DA DT DA DT DA DC SEQRES 2 H 31 DA DC DC DC DT DA DA DT DC DA DT DA DC SEQRES 3 H 31 DG DT DT DT DA SEQRES 1 C 209 MET ILE ILE GLY TYR ALA ARG VAL SER SER LEU ASP GLN SEQRES 2 C 209 ASN LEU GLU ARG GLN LEU GLU ASN LEU LYS THR PHE GLY SEQRES 3 C 209 ALA GLU LYS ILE PHE THR GLU LYS GLN SER GLY LYS SER SEQRES 4 C 209 ILE GLU ASN ARG PRO ILE LEU GLN LYS ALA LEU ASN PHE SEQRES 5 C 209 VAL ARG MET GLY ASP ARG PHE ILE VAL GLU SER ILE ASP SEQRES 6 C 209 ARG LEU GLY ARG ASN TYR ASN GLU VAL ILE HIS THR VAL SEQRES 7 C 209 ASN TYR LEU LYS ASP LYS GLU VAL GLN LEU MET ILE THR SEQRES 8 C 209 SER LEU PRO MET MET ASN GLU VAL ILE GLY ASN PRO LEU SEQRES 9 C 209 LEU ASP LYS PHE MET LYS ASP LEU ILE ILE GLN ILE LEU SEQRES 10 C 209 ALA MET VAL SER GLU GLN GLU ARG ASN GLU SER LYS ARG SEQRES 11 C 209 ARG GLN ALA GLN GLY ILE GLN VAL ALA LYS GLU LYS GLY SEQRES 12 C 209 VAL TYR LYS GLY ARG PRO LEU LEU TYR SER PRO ASN ALA SEQRES 13 C 209 LYS ASP PRO GLN LYS ARG VAL ILE TYR HIS ARG VAL VAL SEQRES 14 C 209 GLU MET LEU GLU GLU GLY GLN ALA ILE SER LYS ILE ALA SEQRES 15 C 209 LYS GLU VAL ASN ILE THR ARG GLN THR VAL TYR ARG ILE SEQRES 16 C 209 LYS HIS ASP ASN GLY LEU SER SER HIS HIS HIS HIS HIS SEQRES 17 C 209 HIS SEQRES 1 D 209 MET ILE ILE GLY TYR ALA ARG VAL SER SER LEU ASP GLN SEQRES 2 D 209 ASN LEU GLU ARG GLN LEU GLU ASN LEU LYS THR PHE GLY SEQRES 3 D 209 ALA GLU LYS ILE PHE THR GLU LYS GLN SER GLY LYS SER SEQRES 4 D 209 ILE GLU ASN ARG PRO ILE LEU GLN LYS ALA LEU ASN PHE SEQRES 5 D 209 VAL ARG MET GLY ASP ARG PHE ILE VAL GLU SER ILE ASP SEQRES 6 D 209 ARG LEU GLY ARG ASN TYR ASN GLU VAL ILE HIS THR VAL SEQRES 7 D 209 ASN TYR LEU LYS ASP LYS GLU VAL GLN LEU MET ILE THR SEQRES 8 D 209 SER LEU PRO MET MET ASN GLU VAL ILE GLY ASN PRO LEU SEQRES 9 D 209 LEU ASP LYS PHE MET LYS ASP LEU ILE ILE GLN ILE LEU SEQRES 10 D 209 ALA MET VAL SER GLU GLN GLU ARG ASN GLU SER LYS ARG SEQRES 11 D 209 ARG GLN ALA GLN GLY ILE GLN VAL ALA LYS GLU LYS GLY SEQRES 12 D 209 VAL TYR LYS GLY ARG PRO LEU LEU TYR SER PRO ASN ALA SEQRES 13 D 209 LYS ASP PRO GLN LYS ARG VAL ILE TYR HIS ARG VAL VAL SEQRES 14 D 209 GLU MET LEU GLU GLU GLY GLN ALA ILE SER LYS ILE ALA SEQRES 15 D 209 LYS GLU VAL ASN ILE THR ARG GLN THR VAL TYR ARG ILE SEQRES 16 D 209 LYS HIS ASP ASN GLY LEU SER SER HIS HIS HIS HIS HIS SEQRES 17 D 209 HIS SEQRES 1 E 209 MET ILE ILE GLY TYR ALA ARG VAL SER SER LEU ASP GLN SEQRES 2 E 209 ASN LEU GLU ARG GLN LEU GLU ASN LEU LYS THR PHE GLY SEQRES 3 E 209 ALA GLU LYS ILE PHE THR GLU LYS GLN SER GLY LYS SER SEQRES 4 E 209 ILE GLU ASN ARG PRO ILE LEU GLN LYS ALA LEU ASN PHE SEQRES 5 E 209 VAL ARG MET GLY ASP ARG PHE ILE VAL GLU SER ILE ASP SEQRES 6 E 209 ARG LEU GLY ARG ASN TYR ASN GLU VAL ILE HIS THR VAL SEQRES 7 E 209 ASN TYR LEU LYS ASP LYS GLU VAL GLN LEU MET ILE THR SEQRES 8 E 209 SER LEU PRO MET MET ASN GLU VAL ILE GLY ASN PRO LEU SEQRES 9 E 209 LEU ASP LYS PHE MET LYS ASP LEU ILE ILE GLN ILE LEU SEQRES 10 E 209 ALA MET VAL SER GLU GLN GLU ARG ASN GLU SER LYS ARG SEQRES 11 E 209 ARG GLN ALA GLN GLY ILE GLN VAL ALA LYS GLU LYS GLY SEQRES 12 E 209 VAL TYR LYS GLY ARG PRO LEU LEU TYR SER PRO ASN ALA SEQRES 13 E 209 LYS ASP PRO GLN LYS ARG VAL ILE TYR HIS ARG VAL VAL SEQRES 14 E 209 GLU MET LEU GLU GLU GLY GLN ALA ILE SER LYS ILE ALA SEQRES 15 E 209 LYS GLU VAL ASN ILE THR ARG GLN THR VAL TYR ARG ILE SEQRES 16 E 209 LYS HIS ASP ASN GLY LEU SER SER HIS HIS HIS HIS HIS SEQRES 17 E 209 HIS SEQRES 1 F 209 MET ILE ILE GLY TYR ALA ARG VAL SER SER LEU ASP GLN SEQRES 2 F 209 ASN LEU GLU ARG GLN LEU GLU ASN LEU LYS THR PHE GLY SEQRES 3 F 209 ALA GLU LYS ILE PHE THR GLU LYS GLN SER GLY LYS SER SEQRES 4 F 209 ILE GLU ASN ARG PRO ILE LEU GLN LYS ALA LEU ASN PHE SEQRES 5 F 209 VAL ARG MET GLY ASP ARG PHE ILE VAL GLU SER ILE ASP SEQRES 6 F 209 ARG LEU GLY ARG ASN TYR ASN GLU VAL ILE HIS THR VAL SEQRES 7 F 209 ASN TYR LEU LYS ASP LYS GLU VAL GLN LEU MET ILE THR SEQRES 8 F 209 SER LEU PRO MET MET ASN GLU VAL ILE GLY ASN PRO LEU SEQRES 9 F 209 LEU ASP LYS PHE MET LYS ASP LEU ILE ILE GLN ILE LEU SEQRES 10 F 209 ALA MET VAL SER GLU GLN GLU ARG ASN GLU SER LYS ARG SEQRES 11 F 209 ARG GLN ALA GLN GLY ILE GLN VAL ALA LYS GLU LYS GLY SEQRES 12 F 209 VAL TYR LYS GLY ARG PRO LEU LEU TYR SER PRO ASN ALA SEQRES 13 F 209 LYS ASP PRO GLN LYS ARG VAL ILE TYR HIS ARG VAL VAL SEQRES 14 F 209 GLU MET LEU GLU GLU GLY GLN ALA ILE SER LYS ILE ALA SEQRES 15 F 209 LYS GLU VAL ASN ILE THR ARG GLN THR VAL TYR ARG ILE SEQRES 16 F 209 LYS HIS ASP ASN GLY LEU SER SER HIS HIS HIS HIS HIS SEQRES 17 F 209 HIS HET SO4 D 210 5 HET SO4 F 210 5 HETNAM SO4 SULFATE ION FORMUL 9 SO4 2(O4 S 2-) HELIX 1 1 LEU C 15 THR C 24 1 10 HELIX 2 2 ARG C 43 VAL C 53 1 11 HELIX 3 3 SER C 63 GLY C 68 5 6 HELIX 4 4 ASN C 70 GLU C 85 1 16 HELIX 5 5 MET C 95 GLY C 101 1 7 HELIX 6 6 PRO C 103 ARG C 125 1 23 HELIX 7 7 ASN C 126 GLY C 143 1 18 HELIX 8 8 ASP C 158 GLU C 174 1 17 HELIX 9 9 ALA C 177 ASN C 186 1 10 HELIX 10 10 THR C 188 HIS C 197 1 10 HELIX 11 11 LEU D 15 THR D 24 1 10 HELIX 12 12 ARG D 43 VAL D 53 1 11 HELIX 13 13 SER D 63 GLY D 68 5 6 HELIX 14 14 ASN D 70 GLU D 85 1 16 HELIX 15 15 MET D 95 GLY D 101 1 7 HELIX 16 16 ASN D 102 GLU D 124 1 23 HELIX 17 17 ASP D 158 GLU D 174 1 17 HELIX 18 18 ALA D 177 ASN D 186 1 10 HELIX 19 19 THR D 188 ASN D 199 1 12 HELIX 20 20 LEU E 15 PHE E 25 1 11 HELIX 21 21 ARG E 43 VAL E 53 1 11 HELIX 22 22 SER E 63 GLY E 68 5 6 HELIX 23 23 ASN E 70 GLU E 85 1 16 HELIX 24 24 MET E 95 ILE E 100 1 6 HELIX 25 25 LEU E 104 ARG E 125 1 22 HELIX 26 26 ASN E 126 GLY E 143 1 18 HELIX 27 27 ASP E 158 GLU E 174 1 17 HELIX 28 28 ALA E 177 ASN E 186 1 10 HELIX 29 29 THR E 188 HIS E 197 1 10 HELIX 30 30 LEU F 15 THR F 24 1 10 HELIX 31 31 ARG F 43 VAL F 53 1 11 HELIX 32 32 SER F 63 GLY F 68 5 6 HELIX 33 33 ASN F 70 GLU F 85 1 16 HELIX 34 34 MET F 95 ILE F 100 1 6 HELIX 35 35 ASN F 102 GLU F 124 1 23 HELIX 36 36 ASP F 158 GLU F 174 1 17 HELIX 37 37 ALA F 177 VAL F 185 1 9 HELIX 38 38 THR F 188 ASN F 199 1 12 SHEET 1 A 4 LYS C 29 THR C 32 0 SHEET 2 A 4 ILE C 2 ALA C 6 1 N GLY C 4 O LYS C 29 SHEET 3 A 4 ARG C 58 VAL C 61 1 O ILE C 60 N ILE C 3 SHEET 4 A 4 GLN C 87 ILE C 90 1 O GLN C 87 N PHE C 59 SHEET 1 B 4 LYS D 29 THR D 32 0 SHEET 2 B 4 ILE D 2 ALA D 6 1 N GLY D 4 O LYS D 29 SHEET 3 B 4 ARG D 58 VAL D 61 1 O ILE D 60 N ILE D 3 SHEET 4 B 4 GLN D 87 ILE D 90 1 O GLN D 87 N PHE D 59 SHEET 1 C 4 LYS E 29 THR E 32 0 SHEET 2 C 4 ILE E 2 ALA E 6 1 N GLY E 4 O LYS E 29 SHEET 3 C 4 ARG E 58 VAL E 61 1 O ILE E 60 N ILE E 3 SHEET 4 C 4 GLN E 87 ILE E 90 1 O GLN E 87 N PHE E 59 SHEET 1 D 4 LYS F 29 THR F 32 0 SHEET 2 D 4 ILE F 2 ALA F 6 1 N GLY F 4 O LYS F 29 SHEET 3 D 4 ARG F 58 VAL F 61 1 O ILE F 60 N ILE F 3 SHEET 4 D 4 GLN F 87 ILE F 90 1 O GLN F 87 N PHE F 59 SITE 1 AC1 4 ARG C 130 ARG D 7 SER D 9 SER D 10 SITE 1 AC2 4 ARG E 130 ARG F 7 SER F 9 SER F 10 CRYST1 132.500 132.500 315.100 90.00 90.00 120.00 P 65 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007547 0.004357 0.000000 0.00000 SCALE2 0.000000 0.008715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003174 0.00000