data_2R39 # _entry.id 2R39 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2R39 RCSB RCSB044369 WWPDB D_1000044369 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC91026.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2R39 _pdbx_database_status.recvd_initial_deposition_date 2007-08-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Bigelow, L.' 2 'Abdullah, J.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of FixG-related protein from Vibrio parahaemolyticus.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Bigelow, L.' 2 primary 'Abdullah, J.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2R39 _cell.length_a 74.567 _cell.length_b 74.567 _cell.length_c 49.360 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2R39 _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'FixG-related protein' 13279.624 1 ? ? 'Residues 373-487' ? 2 water nat water 18.015 47 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAQIAAVDPAG(MSE)SVIRDRNQLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLN LP(MSE)SLGADPDKLNSAITTIQFILTDKSNEFTIEVESRFIKKL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAQIAAVDPAGMSVIRDRNQLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMS LGADPDKLNSAITTIQFILTDKSNEFTIEVESRFIKKL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC91026.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 GLN n 1 5 ILE n 1 6 ALA n 1 7 ALA n 1 8 VAL n 1 9 ASP n 1 10 PRO n 1 11 ALA n 1 12 GLY n 1 13 MSE n 1 14 SER n 1 15 VAL n 1 16 ILE n 1 17 ARG n 1 18 ASP n 1 19 ARG n 1 20 ASN n 1 21 GLN n 1 22 LEU n 1 23 PHE n 1 24 ARG n 1 25 VAL n 1 26 ASN n 1 27 SER n 1 28 ALA n 1 29 GLY n 1 30 GLU n 1 31 VAL n 1 32 GLU n 1 33 ASN n 1 34 THR n 1 35 TYR n 1 36 THR n 1 37 LEU n 1 38 LYS n 1 39 VAL n 1 40 ILE n 1 41 ASN n 1 42 LYS n 1 43 THR n 1 44 GLN n 1 45 GLN n 1 46 VAL n 1 47 GLN n 1 48 GLU n 1 49 TYR n 1 50 ASN n 1 51 LEU n 1 52 ASP n 1 53 VAL n 1 54 LYS n 1 55 GLY n 1 56 LEU n 1 57 ASN n 1 58 ASP n 1 59 VAL n 1 60 SER n 1 61 TRP n 1 62 TYR n 1 63 GLY n 1 64 LYS n 1 65 GLN n 1 66 THR n 1 67 ILE n 1 68 GLN n 1 69 VAL n 1 70 GLU n 1 71 PRO n 1 72 GLY n 1 73 GLU n 1 74 VAL n 1 75 LEU n 1 76 ASN n 1 77 LEU n 1 78 PRO n 1 79 MSE n 1 80 SER n 1 81 LEU n 1 82 GLY n 1 83 ALA n 1 84 ASP n 1 85 PRO n 1 86 ASP n 1 87 LYS n 1 88 LEU n 1 89 ASN n 1 90 SER n 1 91 ALA n 1 92 ILE n 1 93 THR n 1 94 THR n 1 95 ILE n 1 96 GLN n 1 97 PHE n 1 98 ILE n 1 99 LEU n 1 100 THR n 1 101 ASP n 1 102 LYS n 1 103 SER n 1 104 ASN n 1 105 GLU n 1 106 PHE n 1 107 THR n 1 108 ILE n 1 109 GLU n 1 110 VAL n 1 111 GLU n 1 112 SER n 1 113 ARG n 1 114 PHE n 1 115 ILE n 1 116 LYS n 1 117 LYS n 1 118 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Vibrio _entity_src_gen.pdbx_gene_src_gene VP3052 _entity_src_gen.gene_src_species 'Vibrio parahaemolyticus' _entity_src_gen.gene_src_strain 'RIMD 2210633' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio parahaemolyticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 223926 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) derivative' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q87KC5_VIBPA _struct_ref.pdbx_db_accession Q87KC5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QIAAVDPAGMSVIRDRNQLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGA DPDKLNSAITTIQFILTDKSNEFTIEVESRFIKKL ; _struct_ref.pdbx_align_begin 373 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2R39 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 118 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q87KC5 _struct_ref_seq.db_align_beg 373 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 487 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 373 _struct_ref_seq.pdbx_auth_seq_align_end 487 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2R39 SER A 1 ? UNP Q87KC5 ? ? 'EXPRESSION TAG' 370 1 1 2R39 ASN A 2 ? UNP Q87KC5 ? ? 'EXPRESSION TAG' 371 2 1 2R39 ALA A 3 ? UNP Q87KC5 ? ? 'EXPRESSION TAG' 372 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2R39 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.98 _exptl_crystal.density_percent_sol 58.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'HEPES pH 7.5, 30% PEG 400, NaCl, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 2007-06-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97891 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97891 # _reflns.entry_id 2R39 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.02 _reflns.d_resolution_low 50 _reflns.number_all 10446 _reflns.number_obs 10403 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 50.53 _reflns.B_iso_Wilson_estimate 40.04 _reflns.pdbx_redundancy 10.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.02 _reflns_shell.d_res_low 2.12 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.273 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.25 _reflns_shell.pdbx_redundancy 10.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1018 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2R39 _refine.ls_number_reflns_obs 9899 _refine.ls_number_reflns_all 9899 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.02 _refine.ls_d_res_high 2.02 _refine.ls_percent_reflns_obs 96.69 _refine.ls_R_factor_obs 0.20513 _refine.ls_R_factor_all 0.20513 _refine.ls_R_factor_R_work 0.20341 _refine.ls_R_factor_R_free 0.23815 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 498 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 49.790 _refine.aniso_B[1][1] -0.99 _refine.aniso_B[2][2] -0.99 _refine.aniso_B[3][3] 1.48 _refine.aniso_B[1][2] -0.49 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.161 _refine.pdbx_overall_ESU_R_Free 0.150 _refine.overall_SU_ML 0.101 _refine.overall_SU_B 6.758 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 862 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 909 _refine_hist.d_res_high 2.02 _refine_hist.d_res_low 27.02 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 873 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.326 1.972 ? 1181 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.986 5.000 ? 107 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.686 26.098 ? 41 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.451 15.000 ? 162 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.040 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.095 0.200 ? 139 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 646 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.186 0.200 ? 360 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.301 0.200 ? 594 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.159 0.200 ? 63 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.226 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.181 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.950 1.500 ? 560 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.368 2.000 ? 882 'X-RAY DIFFRACTION' ? r_scbond_it 1.976 3.000 ? 353 'X-RAY DIFFRACTION' ? r_scangle_it 3.013 4.500 ? 299 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.02 _refine_ls_shell.d_res_low 2.07 _refine_ls_shell.number_reflns_R_work 458 _refine_ls_shell.R_factor_R_work 0.188 _refine_ls_shell.percent_reflns_obs 60.89 _refine_ls_shell.R_factor_R_free 0.237 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 481 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2R39 _struct.title 'Crystal structure of FixG-related protein from Vibrio parahaemolyticus' _struct.pdbx_descriptor 'FixG-related protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2R39 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;FixG-related protein, Vibrio parahaemolyticus, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Iron, Iron-sulfur, Metal-binding, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 84 ? LEU A 88 ? ASP A 453 LEU A 457 5 ? 5 HELX_P HELX_P2 2 LYS A 102 ? GLU A 105 ? LYS A 471 GLU A 474 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 12 C ? ? ? 1_555 A MSE 13 N ? ? A GLY 381 A MSE 382 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 13 C ? ? ? 1_555 A SER 14 N ? ? A MSE 382 A SER 383 1_555 ? ? ? ? ? ? ? 1.319 ? covale3 covale ? ? A PRO 78 C ? ? ? 1_555 A MSE 79 N ? ? A PRO 447 A MSE 448 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A MSE 79 C ? ? ? 1_555 A SER 80 N ? ? A MSE 448 A SER 449 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 11 ? ARG A 17 ? ALA A 380 ARG A 386 A 2 VAL A 31 ? ASN A 41 ? VAL A 400 ASN A 410 A 3 VAL A 74 ? ALA A 83 ? VAL A 443 ALA A 452 A 4 SER A 60 ? TYR A 62 ? SER A 429 TYR A 431 B 1 THR A 66 ? VAL A 69 ? THR A 435 VAL A 438 B 2 GLN A 47 ? LYS A 54 ? GLN A 416 LYS A 423 B 3 ILE A 92 ? ASP A 101 ? ILE A 461 ASP A 470 B 4 PHE A 106 ? ILE A 115 ? PHE A 475 ILE A 484 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 14 ? N SER A 383 O LYS A 38 ? O LYS A 407 A 2 3 N LEU A 37 ? N LEU A 406 O LEU A 77 ? O LEU A 446 A 3 4 O GLY A 82 ? O GLY A 451 N SER A 60 ? N SER A 429 B 1 2 O VAL A 69 ? O VAL A 438 N GLN A 47 ? N GLN A 416 B 2 3 N ASN A 50 ? N ASN A 419 O THR A 100 ? O THR A 469 B 3 4 N THR A 93 ? N THR A 462 O PHE A 114 ? O PHE A 483 # _database_PDB_matrix.entry_id 2R39 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2R39 _atom_sites.fract_transf_matrix[1][1] 0.013411 _atom_sites.fract_transf_matrix[1][2] 0.007743 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015485 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020259 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 370 ? ? ? A . n A 1 2 ASN 2 371 ? ? ? A . n A 1 3 ALA 3 372 ? ? ? A . n A 1 4 GLN 4 373 ? ? ? A . n A 1 5 ILE 5 374 ? ? ? A . n A 1 6 ALA 6 375 ? ? ? A . n A 1 7 ALA 7 376 ? ? ? A . n A 1 8 VAL 8 377 377 VAL VAL A . n A 1 9 ASP 9 378 378 ASP ASP A . n A 1 10 PRO 10 379 379 PRO PRO A . n A 1 11 ALA 11 380 380 ALA ALA A . n A 1 12 GLY 12 381 381 GLY GLY A . n A 1 13 MSE 13 382 382 MSE MSE A . n A 1 14 SER 14 383 383 SER SER A . n A 1 15 VAL 15 384 384 VAL VAL A . n A 1 16 ILE 16 385 385 ILE ILE A . n A 1 17 ARG 17 386 386 ARG ARG A . n A 1 18 ASP 18 387 387 ASP ASP A . n A 1 19 ARG 19 388 388 ARG ARG A . n A 1 20 ASN 20 389 389 ASN ASN A . n A 1 21 GLN 21 390 390 GLN GLN A . n A 1 22 LEU 22 391 391 LEU LEU A . n A 1 23 PHE 23 392 392 PHE PHE A . n A 1 24 ARG 24 393 393 ARG ARG A . n A 1 25 VAL 25 394 394 VAL VAL A . n A 1 26 ASN 26 395 ? ? ? A . n A 1 27 SER 27 396 ? ? ? A . n A 1 28 ALA 28 397 397 ALA ALA A . n A 1 29 GLY 29 398 398 GLY GLY A . n A 1 30 GLU 30 399 399 GLU GLU A . n A 1 31 VAL 31 400 400 VAL VAL A . n A 1 32 GLU 32 401 401 GLU GLU A . n A 1 33 ASN 33 402 402 ASN ASN A . n A 1 34 THR 34 403 403 THR THR A . n A 1 35 TYR 35 404 404 TYR TYR A . n A 1 36 THR 36 405 405 THR THR A . n A 1 37 LEU 37 406 406 LEU LEU A . n A 1 38 LYS 38 407 407 LYS LYS A . n A 1 39 VAL 39 408 408 VAL VAL A . n A 1 40 ILE 40 409 409 ILE ILE A . n A 1 41 ASN 41 410 410 ASN ASN A . n A 1 42 LYS 42 411 411 LYS LYS A . n A 1 43 THR 43 412 412 THR THR A . n A 1 44 GLN 44 413 413 GLN GLN A . n A 1 45 GLN 45 414 414 GLN GLN A . n A 1 46 VAL 46 415 415 VAL VAL A . n A 1 47 GLN 47 416 416 GLN GLN A . n A 1 48 GLU 48 417 417 GLU GLU A . n A 1 49 TYR 49 418 418 TYR TYR A . n A 1 50 ASN 50 419 419 ASN ASN A . n A 1 51 LEU 51 420 420 LEU LEU A . n A 1 52 ASP 52 421 421 ASP ASP A . n A 1 53 VAL 53 422 422 VAL VAL A . n A 1 54 LYS 54 423 423 LYS LYS A . n A 1 55 GLY 55 424 424 GLY GLY A . n A 1 56 LEU 56 425 425 LEU LEU A . n A 1 57 ASN 57 426 426 ASN ASN A . n A 1 58 ASP 58 427 427 ASP ASP A . n A 1 59 VAL 59 428 428 VAL VAL A . n A 1 60 SER 60 429 429 SER SER A . n A 1 61 TRP 61 430 430 TRP TRP A . n A 1 62 TYR 62 431 431 TYR TYR A . n A 1 63 GLY 63 432 432 GLY GLY A . n A 1 64 LYS 64 433 433 LYS LYS A . n A 1 65 GLN 65 434 434 GLN GLN A . n A 1 66 THR 66 435 435 THR THR A . n A 1 67 ILE 67 436 436 ILE ILE A . n A 1 68 GLN 68 437 437 GLN GLN A . n A 1 69 VAL 69 438 438 VAL VAL A . n A 1 70 GLU 70 439 439 GLU GLU A . n A 1 71 PRO 71 440 440 PRO PRO A . n A 1 72 GLY 72 441 441 GLY GLY A . n A 1 73 GLU 73 442 442 GLU GLU A . n A 1 74 VAL 74 443 443 VAL VAL A . n A 1 75 LEU 75 444 444 LEU LEU A . n A 1 76 ASN 76 445 445 ASN ASN A . n A 1 77 LEU 77 446 446 LEU LEU A . n A 1 78 PRO 78 447 447 PRO PRO A . n A 1 79 MSE 79 448 448 MSE MSE A . n A 1 80 SER 80 449 449 SER SER A . n A 1 81 LEU 81 450 450 LEU LEU A . n A 1 82 GLY 82 451 451 GLY GLY A . n A 1 83 ALA 83 452 452 ALA ALA A . n A 1 84 ASP 84 453 453 ASP ASP A . n A 1 85 PRO 85 454 454 PRO PRO A . n A 1 86 ASP 86 455 455 ASP ASP A . n A 1 87 LYS 87 456 456 LYS LYS A . n A 1 88 LEU 88 457 457 LEU LEU A . n A 1 89 ASN 89 458 458 ASN ASN A . n A 1 90 SER 90 459 459 SER SER A . n A 1 91 ALA 91 460 460 ALA ALA A . n A 1 92 ILE 92 461 461 ILE ILE A . n A 1 93 THR 93 462 462 THR THR A . n A 1 94 THR 94 463 463 THR THR A . n A 1 95 ILE 95 464 464 ILE ILE A . n A 1 96 GLN 96 465 465 GLN GLN A . n A 1 97 PHE 97 466 466 PHE PHE A . n A 1 98 ILE 98 467 467 ILE ILE A . n A 1 99 LEU 99 468 468 LEU LEU A . n A 1 100 THR 100 469 469 THR THR A . n A 1 101 ASP 101 470 470 ASP ASP A . n A 1 102 LYS 102 471 471 LYS LYS A . n A 1 103 SER 103 472 472 SER SER A . n A 1 104 ASN 104 473 473 ASN ASN A . n A 1 105 GLU 105 474 474 GLU GLU A . n A 1 106 PHE 106 475 475 PHE PHE A . n A 1 107 THR 107 476 476 THR THR A . n A 1 108 ILE 108 477 477 ILE ILE A . n A 1 109 GLU 109 478 478 GLU GLU A . n A 1 110 VAL 110 479 479 VAL VAL A . n A 1 111 GLU 111 480 480 GLU GLU A . n A 1 112 SER 112 481 481 SER SER A . n A 1 113 ARG 113 482 482 ARG ARG A . n A 1 114 PHE 114 483 483 PHE PHE A . n A 1 115 ILE 115 484 484 ILE ILE A . n A 1 116 LYS 116 485 485 LYS LYS A . n A 1 117 LYS 117 486 486 LYS LYS A . n A 1 118 LEU 118 487 487 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 501 501 HOH HOH A . B 2 HOH 2 502 502 HOH HOH A . B 2 HOH 3 503 503 HOH HOH A . B 2 HOH 4 504 504 HOH HOH A . B 2 HOH 5 505 505 HOH HOH A . B 2 HOH 6 506 506 HOH HOH A . B 2 HOH 7 507 507 HOH HOH A . B 2 HOH 8 508 508 HOH HOH A . B 2 HOH 9 509 509 HOH HOH A . B 2 HOH 10 510 510 HOH HOH A . B 2 HOH 11 511 511 HOH HOH A . B 2 HOH 12 512 512 HOH HOH A . B 2 HOH 13 513 513 HOH HOH A . B 2 HOH 14 514 514 HOH HOH A . B 2 HOH 15 515 515 HOH HOH A . B 2 HOH 16 516 516 HOH HOH A . B 2 HOH 17 517 517 HOH HOH A . B 2 HOH 18 518 518 HOH HOH A . B 2 HOH 19 519 519 HOH HOH A . B 2 HOH 20 520 520 HOH HOH A . B 2 HOH 21 521 521 HOH HOH A . B 2 HOH 22 522 522 HOH HOH A . B 2 HOH 23 523 523 HOH HOH A . B 2 HOH 24 524 524 HOH HOH A . B 2 HOH 25 525 525 HOH HOH A . B 2 HOH 26 526 526 HOH HOH A . B 2 HOH 27 527 527 HOH HOH A . B 2 HOH 28 528 528 HOH HOH A . B 2 HOH 29 529 529 HOH HOH A . B 2 HOH 30 530 530 HOH HOH A . B 2 HOH 31 531 531 HOH HOH A . B 2 HOH 32 532 532 HOH HOH A . B 2 HOH 33 533 533 HOH HOH A . B 2 HOH 34 534 534 HOH HOH A . B 2 HOH 35 535 535 HOH HOH A . B 2 HOH 36 536 536 HOH HOH A . B 2 HOH 37 537 537 HOH HOH A . B 2 HOH 38 538 538 HOH HOH A . B 2 HOH 39 539 539 HOH HOH A . B 2 HOH 40 540 540 HOH HOH A . B 2 HOH 41 541 541 HOH HOH A . B 2 HOH 42 542 542 HOH HOH A . B 2 HOH 43 543 543 HOH HOH A . B 2 HOH 44 544 544 HOH HOH A . B 2 HOH 45 545 545 HOH HOH A . B 2 HOH 46 546 546 HOH HOH A . B 2 HOH 47 547 547 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 382 ? MET SELENOMETHIONINE 2 A MSE 79 A MSE 448 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 528 ? B HOH . 2 1 A HOH 537 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-11 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 11.4418 28.8771 -13.3935 -0.0219 0.0210 -0.0723 0.1357 -0.0816 -0.1451 10.8218 1.3628 5.4103 -1.8774 -3.9118 -0.9125 0.4238 1.1145 -0.8985 -0.6121 -0.5193 0.3259 0.4760 0.1656 0.0954 'X-RAY DIFFRACTION' 2 ? refined 12.3958 32.8278 -5.0235 -0.1872 -0.1685 -0.1667 0.0337 -0.0117 -0.0276 5.9570 2.4233 2.3969 -2.6153 0.1360 -0.6834 0.2377 0.0957 -0.2813 -0.1821 -0.1377 0.1003 0.2441 0.1643 -0.1000 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 378 A 9 A 389 A 20 ? 'X-RAY DIFFRACTION' ? 2 1 A 398 A 29 A 413 A 44 ? 'X-RAY DIFFRACTION' ? 3 1 A 441 A 72 A 447 A 78 ? 'X-RAY DIFFRACTION' ? 4 2 A 414 A 45 A 440 A 71 ? 'X-RAY DIFFRACTION' ? 5 2 A 448 A 79 A 487 A 118 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 392 ? ? 48.34 29.82 2 1 ARG A 393 ? ? -52.13 81.62 3 1 SER A 481 ? ? -148.87 -159.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 389 ? CG ? A ASN 20 CG 2 1 Y 1 A ASN 389 ? OD1 ? A ASN 20 OD1 3 1 Y 1 A ASN 389 ? ND2 ? A ASN 20 ND2 4 1 Y 1 A VAL 394 ? CG1 ? A VAL 25 CG1 5 1 Y 1 A VAL 394 ? CG2 ? A VAL 25 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 370 ? A SER 1 2 1 Y 1 A ASN 371 ? A ASN 2 3 1 Y 1 A ALA 372 ? A ALA 3 4 1 Y 1 A GLN 373 ? A GLN 4 5 1 Y 1 A ILE 374 ? A ILE 5 6 1 Y 1 A ALA 375 ? A ALA 6 7 1 Y 1 A ALA 376 ? A ALA 7 8 1 Y 1 A ASN 395 ? A ASN 26 9 1 Y 1 A SER 396 ? A SER 27 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #