data_2R5Y # _entry.id 2R5Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2R5Y pdb_00002r5y 10.2210/pdb2r5y/pdb NDB PD1071 ? ? RCSB RCSB044466 ? ? WWPDB D_1000044466 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1B8I 'Structure of the homeotic UBX/EXD/DNA ternary complex' unspecified PDB 2R5Z 'Structure of Scr/Exd complex bound to a DNA sequence derived from the fkh gene' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2R5Y _pdbx_database_status.recvd_initial_deposition_date 2007-09-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aggarwal, A.K.' 1 'Passner, J.M.' 2 'Jain, R.' 3 # _citation.id primary _citation.title 'Functional specificity of a Hox protein mediated by the recognition of minor groove structure' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 131 _citation.page_first 530 _citation.page_last 543 _citation.year 2007 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17981120 _citation.pdbx_database_id_DOI 10.1016/j.cell.2007.09.024 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joshi, R.' 1 ? primary 'Passner, J.M.' 2 ? primary 'Rohs, R.' 3 ? primary 'Jain, R.' 4 ? primary 'Sosinsky, A.' 5 ? primary 'Crickmore, M.A.' 6 ? primary 'Jacob, V.' 7 ? primary 'Aggarwal, A.K.' 8 ? primary 'Honig, B.' 9 ? primary 'Mann, R.S.' 10 ? # _cell.entry_id 2R5Y _cell.length_a 65.310 _cell.length_b 65.310 _cell.length_c 200.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2R5Y _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DGP*DGP*DCP*DTP*DG)-3') ; 6154.987 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DTP*DAP*DGP*DAP*DG)-3') ; 6110.995 1 ? ? ? ? 3 polymer man 'Homeotic protein Sex combs reduced' 10967.711 1 ? ? 'Homeobox DNA-binding domain' ? 4 polymer man 'Homeobox protein extradenticle' 7553.561 1 ? ? 'Homeobox TALE-type DNA-binding domain' ? 5 water nat water 18.015 103 ? ? ? ? # _entity_name_com.entity_id 4 _entity_name_com.name Dpbx # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DC)(DT)(DC)(DT)(DA)(DT)(DG)(DA)(DT)(DT)(DT)(DA)(DT)(DG)(DG)(DG)(DC)(DT)(DG)' ACTCTATGATTTATGGGCTG C ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DG)(DC)(DC)(DC)(DA)(DT)(DA)(DA)(DA)(DT)(DC)(DA)(DT)(DA)(DG)(DA)(DG)' TCAGCCCATAAATCATAGAG D ? 3 'polypeptide(L)' no no ;GKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRR MKWKKEHK ; ;GKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRR MKWKKEHK ; A ? 4 'polypeptide(L)' no no ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DT n 1 8 DG n 1 9 DA n 1 10 DT n 1 11 DT n 1 12 DT n 1 13 DA n 1 14 DT n 1 15 DG n 1 16 DG n 1 17 DG n 1 18 DC n 1 19 DT n 1 20 DG n 2 1 DT n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DC n 2 6 DC n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DA n 2 11 DA n 2 12 DA n 2 13 DT n 2 14 DC n 2 15 DA n 2 16 DT n 2 17 DA n 2 18 DG n 2 19 DA n 2 20 DG n 3 1 GLY n 3 2 LYS n 3 3 LYS n 3 4 ASN n 3 5 PRO n 3 6 PRO n 3 7 GLN n 3 8 ILE n 3 9 TYR n 3 10 PRO n 3 11 TRP n 3 12 MET n 3 13 LYS n 3 14 ARG n 3 15 VAL n 3 16 HIS n 3 17 LEU n 3 18 GLY n 3 19 THR n 3 20 SER n 3 21 THR n 3 22 VAL n 3 23 ASN n 3 24 ALA n 3 25 ASN n 3 26 GLY n 3 27 GLU n 3 28 THR n 3 29 LYS n 3 30 ARG n 3 31 GLN n 3 32 ARG n 3 33 THR n 3 34 SER n 3 35 TYR n 3 36 THR n 3 37 ARG n 3 38 TYR n 3 39 GLN n 3 40 THR n 3 41 LEU n 3 42 GLU n 3 43 LEU n 3 44 GLU n 3 45 LYS n 3 46 GLU n 3 47 PHE n 3 48 HIS n 3 49 PHE n 3 50 ASN n 3 51 ARG n 3 52 TYR n 3 53 LEU n 3 54 THR n 3 55 ARG n 3 56 ARG n 3 57 ARG n 3 58 ARG n 3 59 ILE n 3 60 GLU n 3 61 ILE n 3 62 ALA n 3 63 HIS n 3 64 ALA n 3 65 LEU n 3 66 SER n 3 67 LEU n 3 68 THR n 3 69 GLU n 3 70 ARG n 3 71 GLN n 3 72 ILE n 3 73 LYS n 3 74 ILE n 3 75 TRP n 3 76 PHE n 3 77 GLN n 3 78 ASN n 3 79 ARG n 3 80 ARG n 3 81 MET n 3 82 LYS n 3 83 TRP n 3 84 LYS n 3 85 LYS n 3 86 GLU n 3 87 HIS n 3 88 LYS n 4 1 ALA n 4 2 ARG n 4 3 ARG n 4 4 LYS n 4 5 ARG n 4 6 ARG n 4 7 ASN n 4 8 PHE n 4 9 SER n 4 10 LYS n 4 11 GLN n 4 12 ALA n 4 13 SER n 4 14 GLU n 4 15 ILE n 4 16 LEU n 4 17 ASN n 4 18 GLU n 4 19 TYR n 4 20 PHE n 4 21 TYR n 4 22 SER n 4 23 HIS n 4 24 LEU n 4 25 SER n 4 26 ASN n 4 27 PRO n 4 28 TYR n 4 29 PRO n 4 30 SER n 4 31 GLU n 4 32 GLU n 4 33 ALA n 4 34 LYS n 4 35 GLU n 4 36 GLU n 4 37 LEU n 4 38 ALA n 4 39 ARG n 4 40 LYS n 4 41 CYS n 4 42 GLY n 4 43 ILE n 4 44 THR n 4 45 VAL n 4 46 SER n 4 47 GLN n 4 48 VAL n 4 49 SER n 4 50 ASN n 4 51 TRP n 4 52 PHE n 4 53 GLY n 4 54 ASN n 4 55 LYS n 4 56 ARG n 4 57 ILE n 4 58 ARG n 4 59 TYR n 4 60 LYS n 4 61 LYS n 4 62 ASN n 4 63 ILE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 3 1 sample ? ? ? 'fruit fly' Drosophila Scr ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21(DE3)pLysS' ? ? ? ? ? ? ? plasmid ? ? ? pET-3A ? ? 4 1 sample ? ? ? 'fruit fly' Drosophila exd ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'Bl21(DE3)pLysS' ? ? ? ? ? ? ? plasmid ? ? ? pET-3A ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SCR_DROME P09077 3 ;KKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM KWKKEHK ; 298 ? 2 UNP EXD_DROME P40427 4 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI 238 ? 3 PDB 2R5Y 2R5Y 1 ACTCTATGATTTATGGGCTG 1 ? 4 PDB 2R5Y 2R5Y 2 TCAGCCCATAAATCATAGAG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2R5Y A 2 ? 88 ? P09077 298 ? 384 ? 75 161 2 2 2R5Y B 1 ? 63 ? P40427 238 ? 300 ? 201 260 3 3 2R5Y C 1 ? 20 ? 2R5Y 1 ? 20 ? 1 20 4 4 2R5Y D 1 ? 20 ? 2R5Y 21 ? 40 ? 21 40 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2R5Y GLY A 1 ? UNP P09077 ? ? 'expression tag' 74 1 1 2R5Y SER A 66 ? UNP P09077 CYS 362 'engineered mutation' 139 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2R5Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.47 _exptl_crystal.density_percent_sol 64.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.7 _exptl_crystal_grow.pdbx_details ;20% MPD, 10-14% PEG 4000, 0.2M sodium acetate, 0.2M potassium chloride, 0.1M Tris , pH 8.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 2 MPD ? ? ? 1 3 1 'PEG 4000' ? ? ? 1 4 2 'PEG 4000' ? ? ? 1 5 1 'sodium acetate' ? ? ? 1 6 2 'sodium acetate' ? ? ? 1 7 1 'potassium chloride' ? ? ? 1 8 2 'potassium chloride' ? ? ? 1 9 1 Tris ? ? ? 1 10 2 Tris ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2004-03-05 _diffrn_detector.details 'double crystal monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 2R5Y _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.6 _reflns.number_obs 13550 _reflns.number_all 13684 _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rsym_value 0.099 _reflns.pdbx_netI_over_sigmaI 36 _reflns.B_iso_Wilson_estimate 56.0 _reflns.pdbx_redundancy 23.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.356 _reflns_shell.pdbx_Rsym_value 0.356 _reflns_shell.meanI_over_sigI_obs 9.7 _reflns_shell.pdbx_redundancy 1.86 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1371 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2R5Y _refine.ls_number_reflns_obs 13429 _refine.ls_number_reflns_all 14460 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 541221.77 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 11.96 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 96.3 _refine.ls_R_factor_obs 0.255 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.255 _refine.ls_R_factor_R_free 0.299 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.7 _refine.ls_number_reflns_R_free 1031 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 57.9 _refine.aniso_B[1][1] -0.58 _refine.aniso_B[2][2] -0.58 _refine.aniso_B[3][3] 1.16 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.308333 _refine.solvent_model_param_bsol 37.2994 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1B8I' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2R5Y _refine_analyze.Luzzati_coordinate_error_obs 0.43 _refine_analyze.Luzzati_sigma_a_obs 0.39 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.51 _refine_analyze.Luzzati_sigma_a_free 0.47 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1149 _refine_hist.pdbx_number_atoms_nucleic_acid 814 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 2066 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 11.96 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.0 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.13 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.58 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.70 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.07 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.32 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work 1980 _refine_ls_shell.R_factor_R_work 0.394 _refine_ls_shell.percent_reflns_obs 94.8 _refine_ls_shell.R_factor_R_free 0.414 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 7.3 _refine_ls_shell.number_reflns_R_free 155 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2252 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2R5Y _struct.title 'Structure of Scr/Exd complex bound to a consensus Hox-Exd site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2R5Y _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text ;Homeodomain, homeotic proteins, specificity, Developmental protein, DNA-binding, Homeobox, Nucleus, Transcription, Transcription regulation, TRANSCRIPTION-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR C 9 ? LYS C 13 ? TYR A 82 LYS A 86 5 ? 5 HELX_P HELX_P2 2 THR C 36 ? HIS C 48 ? THR A 109 HIS A 121 1 ? 13 HELX_P HELX_P3 3 THR C 54 ? LEU C 65 ? THR A 127 LEU A 138 1 ? 12 HELX_P HELX_P4 4 THR C 68 ? LYS C 85 ? THR A 141 LYS A 158 1 ? 18 HELX_P HELX_P5 5 SER D 9 ? HIS D 23 ? SER B 209 HIS B 223 1 ? 15 HELX_P HELX_P6 6 SER D 30 ? GLY D 42 ? SER B 227 GLY B 239 1 ? 13 HELX_P HELX_P7 7 THR D 44 ? ASN D 62 ? THR B 241 ASN B 259 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 20 N2 ? ? C DC 2 D DG 40 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 19 N1 ? ? C DT 3 D DA 39 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog3 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 18 N2 ? ? C DC 4 D DG 38 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog4 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 17 N1 ? ? C DT 5 D DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 17 N6 ? ? C DT 5 D DA 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 16 N3 ? ? C DA 6 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 16 O4 ? ? C DA 6 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 15 N1 ? ? C DT 7 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 15 N6 ? ? C DT 7 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 14 N3 ? ? C DG 8 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 14 O2 ? ? C DG 8 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 14 N4 ? ? C DG 8 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 13 N3 ? ? C DA 9 D DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 13 O4 ? ? C DA 9 D DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 10 D DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 10 D DA 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 11 N1 ? ? C DT 11 D DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 11 N6 ? ? C DT 11 D DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 10 N1 ? ? C DT 12 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 10 N6 ? ? C DT 12 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 9 N3 ? ? C DA 13 D DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 9 O4 ? ? C DA 13 D DT 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 8 N1 ? ? C DT 14 D DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 8 N6 ? ? C DT 14 D DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 7 N3 ? ? C DG 15 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 7 O2 ? ? C DG 15 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 7 N4 ? ? C DG 15 D DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 6 N3 ? ? C DG 16 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 6 O2 ? ? C DG 16 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 6 N4 ? ? C DG 16 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 17 N1 ? ? ? 1_555 B DC 5 N3 ? ? C DG 17 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 17 N2 ? ? ? 1_555 B DC 5 O2 ? ? C DG 17 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 17 O6 ? ? ? 1_555 B DC 5 N4 ? ? C DG 17 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 4 N2 ? ? C DC 18 D DG 24 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog35 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 2 N3 ? ? C DG 20 D DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 2 O2 ? ? C DG 20 D DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 2 N4 ? ? C DG 20 D DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2R5Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2R5Y _atom_sites.fract_transf_matrix[1][1] 0.015312 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015312 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004993 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA ADE C . n A 1 2 DC 2 2 2 DC CYT C . n A 1 3 DT 3 3 3 DT THY C . n A 1 4 DC 4 4 4 DC CYT C . n A 1 5 DT 5 5 5 DT THY C . n A 1 6 DA 6 6 6 DA ADE C . n A 1 7 DT 7 7 7 DT THY C . n A 1 8 DG 8 8 8 DG GUA C . n A 1 9 DA 9 9 9 DA ADE C . n A 1 10 DT 10 10 10 DT THY C . n A 1 11 DT 11 11 11 DT THY C . n A 1 12 DT 12 12 12 DT THY C . n A 1 13 DA 13 13 13 DA ADE C . n A 1 14 DT 14 14 14 DT THY C . n A 1 15 DG 15 15 15 DG GUA C . n A 1 16 DG 16 16 16 DG GUA C . n A 1 17 DG 17 17 17 DG GUA C . n A 1 18 DC 18 18 18 DC CYT C . n A 1 19 DT 19 19 19 DT THY C . n A 1 20 DG 20 20 20 DG GUA C . n B 2 1 DT 1 21 21 DT THY D . n B 2 2 DC 2 22 22 DC CYT D . n B 2 3 DA 3 23 23 DA ADE D . n B 2 4 DG 4 24 24 DG GUA D . n B 2 5 DC 5 25 25 DC CYT D . n B 2 6 DC 6 26 26 DC CYT D . n B 2 7 DC 7 27 27 DC CYT D . n B 2 8 DA 8 28 28 DA ADE D . n B 2 9 DT 9 29 29 DT THY D . n B 2 10 DA 10 30 30 DA ADE D . n B 2 11 DA 11 31 31 DA ADE D . n B 2 12 DA 12 32 32 DA ADE D . n B 2 13 DT 13 33 33 DT THY D . n B 2 14 DC 14 34 34 DC CYT D . n B 2 15 DA 15 35 35 DA ADE D . n B 2 16 DT 16 36 36 DT THY D . n B 2 17 DA 17 37 37 DA ADE D . n B 2 18 DG 18 38 38 DG GUA D . n B 2 19 DA 19 39 39 DA ADE D . n B 2 20 DG 20 40 40 DG GUA D . n C 3 1 GLY 1 74 74 GLY GLY A . n C 3 2 LYS 2 75 75 LYS LYS A . n C 3 3 LYS 3 76 76 LYS LYS A . n C 3 4 ASN 4 77 77 ASN ASN A . n C 3 5 PRO 5 78 78 PRO PRO A . n C 3 6 PRO 6 79 79 PRO PRO A . n C 3 7 GLN 7 80 80 GLN GLN A . n C 3 8 ILE 8 81 81 ILE ILE A . n C 3 9 TYR 9 82 82 TYR TYR A . n C 3 10 PRO 10 83 83 PRO PRO A . n C 3 11 TRP 11 84 84 TRP TRP A . n C 3 12 MET 12 85 85 MET MET A . n C 3 13 LYS 13 86 86 LYS ALA A . n C 3 14 ARG 14 87 87 ARG ARG A . n C 3 15 VAL 15 88 88 VAL VAL A . n C 3 16 HIS 16 89 ? ? ? A . n C 3 17 LEU 17 90 ? ? ? A . n C 3 18 GLY 18 91 ? ? ? A . n C 3 19 THR 19 92 ? ? ? A . n C 3 20 SER 20 93 ? ? ? A . n C 3 21 THR 21 94 ? ? ? A . n C 3 22 VAL 22 95 ? ? ? A . n C 3 23 ASN 23 96 ? ? ? A . n C 3 24 ALA 24 97 ? ? ? A . n C 3 25 ASN 25 98 ? ? ? A . n C 3 26 GLY 26 99 ? ? ? A . n C 3 27 GLU 27 100 ? ? ? A . n C 3 28 THR 28 101 ? ? ? A . n C 3 29 LYS 29 102 ? ? ? A . n C 3 30 ARG 30 103 ? ? ? A . n C 3 31 GLN 31 104 104 GLN GLN A . n C 3 32 ARG 32 105 105 ARG ARG A . n C 3 33 THR 33 106 106 THR THR A . n C 3 34 SER 34 107 107 SER SER A . n C 3 35 TYR 35 108 108 TYR TYR A . n C 3 36 THR 36 109 109 THR THR A . n C 3 37 ARG 37 110 110 ARG ARG A . n C 3 38 TYR 38 111 111 TYR TYR A . n C 3 39 GLN 39 112 112 GLN GLN A . n C 3 40 THR 40 113 113 THR THR A . n C 3 41 LEU 41 114 114 LEU LEU A . n C 3 42 GLU 42 115 115 GLU GLU A . n C 3 43 LEU 43 116 116 LEU LEU A . n C 3 44 GLU 44 117 117 GLU GLU A . n C 3 45 LYS 45 118 118 LYS LYS A . n C 3 46 GLU 46 119 119 GLU GLU A . n C 3 47 PHE 47 120 120 PHE PHE A . n C 3 48 HIS 48 121 121 HIS HIS A . n C 3 49 PHE 49 122 122 PHE PHE A . n C 3 50 ASN 50 123 123 ASN ASN A . n C 3 51 ARG 51 124 124 ARG ARG A . n C 3 52 TYR 52 125 125 TYR TYR A . n C 3 53 LEU 53 126 126 LEU LEU A . n C 3 54 THR 54 127 127 THR THR A . n C 3 55 ARG 55 128 128 ARG ARG A . n C 3 56 ARG 56 129 129 ARG ARG A . n C 3 57 ARG 57 130 130 ARG ARG A . n C 3 58 ARG 58 131 131 ARG ARG A . n C 3 59 ILE 59 132 132 ILE ILE A . n C 3 60 GLU 60 133 133 GLU GLU A . n C 3 61 ILE 61 134 134 ILE ILE A . n C 3 62 ALA 62 135 135 ALA ALA A . n C 3 63 HIS 63 136 136 HIS HIS A . n C 3 64 ALA 64 137 137 ALA ALA A . n C 3 65 LEU 65 138 138 LEU LEU A . n C 3 66 SER 66 139 139 SER SER A . n C 3 67 LEU 67 140 140 LEU LEU A . n C 3 68 THR 68 141 141 THR THR A . n C 3 69 GLU 69 142 142 GLU GLU A . n C 3 70 ARG 70 143 143 ARG ARG A . n C 3 71 GLN 71 144 144 GLN GLN A . n C 3 72 ILE 72 145 145 ILE ILE A . n C 3 73 LYS 73 146 146 LYS LYS A . n C 3 74 ILE 74 147 147 ILE ILE A . n C 3 75 TRP 75 148 148 TRP TRP A . n C 3 76 PHE 76 149 149 PHE PHE A . n C 3 77 GLN 77 150 150 GLN GLN A . n C 3 78 ASN 78 151 151 ASN ASN A . n C 3 79 ARG 79 152 152 ARG ARG A . n C 3 80 ARG 80 153 153 ARG ARG A . n C 3 81 MET 81 154 154 MET MET A . n C 3 82 LYS 82 155 155 LYS LYS A . n C 3 83 TRP 83 156 156 TRP TRP A . n C 3 84 LYS 84 157 157 LYS LYS A . n C 3 85 LYS 85 158 158 LYS LYS A . n C 3 86 GLU 86 159 159 GLU ALA A . n C 3 87 HIS 87 160 160 HIS HIS A . n C 3 88 LYS 88 161 161 LYS ALA A . n D 4 1 ALA 1 201 ? ? ? B . n D 4 2 ARG 2 202 ? ? ? B . n D 4 3 ARG 3 203 ? ? ? B . n D 4 4 LYS 4 204 ? ? ? B . n D 4 5 ARG 5 205 205 ARG ARG B . n D 4 6 ARG 6 206 206 ARG ARG B . n D 4 7 ASN 7 207 207 ASN ASN B . n D 4 8 PHE 8 208 208 PHE PHE B . n D 4 9 SER 9 209 209 SER SER B . n D 4 10 LYS 10 210 210 LYS LYS B . n D 4 11 GLN 11 211 211 GLN GLN B . n D 4 12 ALA 12 212 212 ALA ALA B . n D 4 13 SER 13 213 213 SER SER B . n D 4 14 GLU 14 214 214 GLU GLU B . n D 4 15 ILE 15 215 215 ILE ILE B . n D 4 16 LEU 16 216 216 LEU LEU B . n D 4 17 ASN 17 217 217 ASN ASN B . n D 4 18 GLU 18 218 218 GLU GLU B . n D 4 19 TYR 19 219 219 TYR TYR B . n D 4 20 PHE 20 220 220 PHE PHE B . n D 4 21 TYR 21 221 221 TYR TYR B . n D 4 22 SER 22 222 222 SER SER B . n D 4 23 HIS 23 223 223 HIS HIS B . n D 4 24 LEU 24 1223 1223 LEU LEU B . n D 4 25 SER 25 1224 1224 SER SER B . n D 4 26 ASN 26 1225 1225 ASN ASN B . n D 4 27 PRO 27 224 224 PRO PRO B . n D 4 28 TYR 28 225 225 TYR TYR B . n D 4 29 PRO 29 226 226 PRO PRO B . n D 4 30 SER 30 227 227 SER SER B . n D 4 31 GLU 31 228 228 GLU GLU B . n D 4 32 GLU 32 229 229 GLU GLU B . n D 4 33 ALA 33 230 230 ALA ALA B . n D 4 34 LYS 34 231 231 LYS LYS B . n D 4 35 GLU 35 232 232 GLU GLU B . n D 4 36 GLU 36 233 233 GLU GLU B . n D 4 37 LEU 37 234 234 LEU LEU B . n D 4 38 ALA 38 235 235 ALA ALA B . n D 4 39 ARG 39 236 236 ARG ARG B . n D 4 40 LYS 40 237 237 LYS LYS B . n D 4 41 CYS 41 238 238 CYS CYS B . n D 4 42 GLY 42 239 239 GLY GLY B . n D 4 43 ILE 43 240 240 ILE ILE B . n D 4 44 THR 44 241 241 THR THR B . n D 4 45 VAL 45 242 242 VAL VAL B . n D 4 46 SER 46 243 243 SER SER B . n D 4 47 GLN 47 244 244 GLN GLN B . n D 4 48 VAL 48 245 245 VAL VAL B . n D 4 49 SER 49 246 246 SER SER B . n D 4 50 ASN 50 247 247 ASN ASN B . n D 4 51 TRP 51 248 248 TRP TRP B . n D 4 52 PHE 52 249 249 PHE PHE B . n D 4 53 GLY 53 250 250 GLY GLY B . n D 4 54 ASN 54 251 251 ASN ASN B . n D 4 55 LYS 55 252 252 LYS LYS B . n D 4 56 ARG 56 253 253 ARG ARG B . n D 4 57 ILE 57 254 254 ILE ILE B . n D 4 58 ARG 58 255 255 ARG ARG B . n D 4 59 TYR 59 256 256 TYR TYR B . n D 4 60 LYS 60 257 257 LYS LYS B . n D 4 61 LYS 61 258 258 LYS LYS B . n D 4 62 ASN 62 259 259 ASN ASN B . n D 4 63 ILE 63 260 260 ILE ILE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HOH 1 801 801 HOH WAT C . E 5 HOH 2 804 804 HOH WAT C . E 5 HOH 3 806 806 HOH WAT C . E 5 HOH 4 808 808 HOH WAT C . E 5 HOH 5 815 815 HOH WAT C . E 5 HOH 6 832 832 HOH WAT C . E 5 HOH 7 839 839 HOH WAT C . E 5 HOH 8 848 848 HOH WAT C . E 5 HOH 9 850 850 HOH WAT C . E 5 HOH 10 852 852 HOH WAT C . E 5 HOH 11 861 861 HOH WAT C . E 5 HOH 12 880 880 HOH WAT C . E 5 HOH 13 883 883 HOH WAT C . E 5 HOH 14 889 889 HOH WAT C . E 5 HOH 15 896 896 HOH WAT C . F 5 HOH 1 803 803 HOH WAT D . F 5 HOH 2 807 807 HOH WAT D . F 5 HOH 3 811 811 HOH WAT D . F 5 HOH 4 823 823 HOH WAT D . F 5 HOH 5 827 827 HOH WAT D . F 5 HOH 6 829 829 HOH WAT D . F 5 HOH 7 833 833 HOH WAT D . F 5 HOH 8 840 840 HOH WAT D . F 5 HOH 9 849 849 HOH WAT D . F 5 HOH 10 864 864 HOH WAT D . F 5 HOH 11 866 866 HOH WAT D . F 5 HOH 12 869 869 HOH WAT D . F 5 HOH 13 871 871 HOH WAT D . F 5 HOH 14 872 872 HOH WAT D . F 5 HOH 15 881 881 HOH WAT D . F 5 HOH 16 890 890 HOH WAT D . F 5 HOH 17 901 901 HOH WAT D . G 5 HOH 1 814 814 HOH WAT A . G 5 HOH 2 816 816 HOH WAT A . G 5 HOH 3 818 818 HOH WAT A . G 5 HOH 4 819 819 HOH WAT A . G 5 HOH 5 820 820 HOH WAT A . G 5 HOH 6 826 826 HOH WAT A . G 5 HOH 7 828 828 HOH WAT A . G 5 HOH 8 830 830 HOH WAT A . G 5 HOH 9 835 835 HOH WAT A . G 5 HOH 10 842 842 HOH WAT A . G 5 HOH 11 843 843 HOH WAT A . G 5 HOH 12 844 844 HOH WAT A . G 5 HOH 13 846 846 HOH WAT A . G 5 HOH 14 847 847 HOH WAT A . G 5 HOH 15 851 851 HOH WAT A . G 5 HOH 16 855 855 HOH WAT A . G 5 HOH 17 856 856 HOH WAT A . G 5 HOH 18 858 858 HOH WAT A . G 5 HOH 19 865 865 HOH WAT A . G 5 HOH 20 868 868 HOH WAT A . G 5 HOH 21 874 874 HOH WAT A . G 5 HOH 22 875 875 HOH WAT A . G 5 HOH 23 876 876 HOH WAT A . G 5 HOH 24 877 877 HOH WAT A . G 5 HOH 25 878 878 HOH WAT A . G 5 HOH 26 888 888 HOH WAT A . G 5 HOH 27 893 893 HOH WAT A . G 5 HOH 28 895 895 HOH WAT A . G 5 HOH 29 897 897 HOH WAT A . G 5 HOH 30 898 898 HOH WAT A . G 5 HOH 31 899 899 HOH WAT A . G 5 HOH 32 900 900 HOH WAT A . G 5 HOH 33 902 902 HOH WAT A . H 5 HOH 1 802 802 HOH WAT B . H 5 HOH 2 805 805 HOH WAT B . H 5 HOH 3 809 809 HOH WAT B . H 5 HOH 4 810 810 HOH WAT B . H 5 HOH 5 812 812 HOH WAT B . H 5 HOH 6 813 813 HOH WAT B . H 5 HOH 7 817 817 HOH WAT B . H 5 HOH 8 821 821 HOH WAT B . H 5 HOH 9 822 822 HOH WAT B . H 5 HOH 10 824 824 HOH WAT B . H 5 HOH 11 825 825 HOH WAT B . H 5 HOH 12 831 831 HOH WAT B . H 5 HOH 13 834 834 HOH WAT B . H 5 HOH 14 836 836 HOH WAT B . H 5 HOH 15 837 837 HOH WAT B . H 5 HOH 16 838 838 HOH WAT B . H 5 HOH 17 841 841 HOH WAT B . H 5 HOH 18 845 845 HOH WAT B . H 5 HOH 19 853 853 HOH WAT B . H 5 HOH 20 854 854 HOH WAT B . H 5 HOH 21 857 857 HOH WAT B . H 5 HOH 22 859 859 HOH WAT B . H 5 HOH 23 860 860 HOH WAT B . H 5 HOH 24 862 862 HOH WAT B . H 5 HOH 25 863 863 HOH WAT B . H 5 HOH 26 867 867 HOH WAT B . H 5 HOH 27 870 870 HOH WAT B . H 5 HOH 28 873 873 HOH WAT B . H 5 HOH 29 879 879 HOH WAT B . H 5 HOH 30 882 882 HOH WAT B . H 5 HOH 31 884 884 HOH WAT B . H 5 HOH 32 885 885 HOH WAT B . H 5 HOH 33 886 886 HOH WAT B . H 5 HOH 34 887 887 HOH WAT B . H 5 HOH 35 891 891 HOH WAT B . H 5 HOH 36 892 892 HOH WAT B . H 5 HOH 37 894 894 HOH WAT B . H 5 HOH 38 903 903 HOH WAT B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 6750 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_entity_src_syn 3 3 'Structure model' struct_ref_seq_dif 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 AMoRE phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 C DT 14 ? ? O C HOH 808 ? ? 2.11 2 1 O A GLU 159 ? ? N A LYS 161 ? ? 2.13 3 1 O B HOH 805 ? ? O B HOH 845 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 123 ? ? -176.71 114.96 2 1 ARG A 124 ? ? -59.62 -5.90 3 1 HIS A 160 ? ? 27.52 -11.00 4 1 ASN B 1225 ? ? -171.28 74.38 5 1 PRO B 224 ? ? -71.73 46.17 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DA _pdbx_validate_planes.auth_asym_id D _pdbx_validate_planes.auth_seq_id 37 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.060 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 86 ? CG ? C LYS 13 CG 2 1 Y 1 A LYS 86 ? CD ? C LYS 13 CD 3 1 Y 1 A LYS 86 ? CE ? C LYS 13 CE 4 1 Y 1 A LYS 86 ? NZ ? C LYS 13 NZ 5 1 Y 1 A GLU 159 ? CG ? C GLU 86 CG 6 1 Y 1 A GLU 159 ? CD ? C GLU 86 CD 7 1 Y 1 A GLU 159 ? OE1 ? C GLU 86 OE1 8 1 Y 1 A GLU 159 ? OE2 ? C GLU 86 OE2 9 1 Y 1 A LYS 161 ? CG ? C LYS 88 CG 10 1 Y 1 A LYS 161 ? CD ? C LYS 88 CD 11 1 Y 1 A LYS 161 ? CE ? C LYS 88 CE 12 1 Y 1 A LYS 161 ? NZ ? C LYS 88 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 89 ? C HIS 16 2 1 Y 1 A LEU 90 ? C LEU 17 3 1 Y 1 A GLY 91 ? C GLY 18 4 1 Y 1 A THR 92 ? C THR 19 5 1 Y 1 A SER 93 ? C SER 20 6 1 Y 1 A THR 94 ? C THR 21 7 1 Y 1 A VAL 95 ? C VAL 22 8 1 Y 1 A ASN 96 ? C ASN 23 9 1 Y 1 A ALA 97 ? C ALA 24 10 1 Y 1 A ASN 98 ? C ASN 25 11 1 Y 1 A GLY 99 ? C GLY 26 12 1 Y 1 A GLU 100 ? C GLU 27 13 1 Y 1 A THR 101 ? C THR 28 14 1 Y 1 A LYS 102 ? C LYS 29 15 1 Y 1 A ARG 103 ? C ARG 30 16 1 Y 1 B ALA 201 ? D ALA 1 17 1 Y 1 B ARG 202 ? D ARG 2 18 1 Y 1 B ARG 203 ? D ARG 3 19 1 Y 1 B LYS 204 ? D LYS 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 CYS N N N N 58 CYS CA C N R 59 CYS C C N N 60 CYS O O N N 61 CYS CB C N N 62 CYS SG S N N 63 CYS OXT O N N 64 CYS H H N N 65 CYS H2 H N N 66 CYS HA H N N 67 CYS HB2 H N N 68 CYS HB3 H N N 69 CYS HG H N N 70 CYS HXT H N N 71 DA OP3 O N N 72 DA P P N N 73 DA OP1 O N N 74 DA OP2 O N N 75 DA "O5'" O N N 76 DA "C5'" C N N 77 DA "C4'" C N R 78 DA "O4'" O N N 79 DA "C3'" C N S 80 DA "O3'" O N N 81 DA "C2'" C N N 82 DA "C1'" C N R 83 DA N9 N Y N 84 DA C8 C Y N 85 DA N7 N Y N 86 DA C5 C Y N 87 DA C6 C Y N 88 DA N6 N N N 89 DA N1 N Y N 90 DA C2 C Y N 91 DA N3 N Y N 92 DA C4 C Y N 93 DA HOP3 H N N 94 DA HOP2 H N N 95 DA "H5'" H N N 96 DA "H5''" H N N 97 DA "H4'" H N N 98 DA "H3'" H N N 99 DA "HO3'" H N N 100 DA "H2'" H N N 101 DA "H2''" H N N 102 DA "H1'" H N N 103 DA H8 H N N 104 DA H61 H N N 105 DA H62 H N N 106 DA H2 H N N 107 DC OP3 O N N 108 DC P P N N 109 DC OP1 O N N 110 DC OP2 O N N 111 DC "O5'" O N N 112 DC "C5'" C N N 113 DC "C4'" C N R 114 DC "O4'" O N N 115 DC "C3'" C N S 116 DC "O3'" O N N 117 DC "C2'" C N N 118 DC "C1'" C N R 119 DC N1 N N N 120 DC C2 C N N 121 DC O2 O N N 122 DC N3 N N N 123 DC C4 C N N 124 DC N4 N N N 125 DC C5 C N N 126 DC C6 C N N 127 DC HOP3 H N N 128 DC HOP2 H N N 129 DC "H5'" H N N 130 DC "H5''" H N N 131 DC "H4'" H N N 132 DC "H3'" H N N 133 DC "HO3'" H N N 134 DC "H2'" H N N 135 DC "H2''" H N N 136 DC "H1'" H N N 137 DC H41 H N N 138 DC H42 H N N 139 DC H5 H N N 140 DC H6 H N N 141 DG OP3 O N N 142 DG P P N N 143 DG OP1 O N N 144 DG OP2 O N N 145 DG "O5'" O N N 146 DG "C5'" C N N 147 DG "C4'" C N R 148 DG "O4'" O N N 149 DG "C3'" C N S 150 DG "O3'" O N N 151 DG "C2'" C N N 152 DG "C1'" C N R 153 DG N9 N Y N 154 DG C8 C Y N 155 DG N7 N Y N 156 DG C5 C Y N 157 DG C6 C N N 158 DG O6 O N N 159 DG N1 N N N 160 DG C2 C N N 161 DG N2 N N N 162 DG N3 N N N 163 DG C4 C Y N 164 DG HOP3 H N N 165 DG HOP2 H N N 166 DG "H5'" H N N 167 DG "H5''" H N N 168 DG "H4'" H N N 169 DG "H3'" H N N 170 DG "HO3'" H N N 171 DG "H2'" H N N 172 DG "H2''" H N N 173 DG "H1'" H N N 174 DG H8 H N N 175 DG H1 H N N 176 DG H21 H N N 177 DG H22 H N N 178 DT OP3 O N N 179 DT P P N N 180 DT OP1 O N N 181 DT OP2 O N N 182 DT "O5'" O N N 183 DT "C5'" C N N 184 DT "C4'" C N R 185 DT "O4'" O N N 186 DT "C3'" C N S 187 DT "O3'" O N N 188 DT "C2'" C N N 189 DT "C1'" C N R 190 DT N1 N N N 191 DT C2 C N N 192 DT O2 O N N 193 DT N3 N N N 194 DT C4 C N N 195 DT O4 O N N 196 DT C5 C N N 197 DT C7 C N N 198 DT C6 C N N 199 DT HOP3 H N N 200 DT HOP2 H N N 201 DT "H5'" H N N 202 DT "H5''" H N N 203 DT "H4'" H N N 204 DT "H3'" H N N 205 DT "HO3'" H N N 206 DT "H2'" H N N 207 DT "H2''" H N N 208 DT "H1'" H N N 209 DT H3 H N N 210 DT H71 H N N 211 DT H72 H N N 212 DT H73 H N N 213 DT H6 H N N 214 GLN N N N N 215 GLN CA C N S 216 GLN C C N N 217 GLN O O N N 218 GLN CB C N N 219 GLN CG C N N 220 GLN CD C N N 221 GLN OE1 O N N 222 GLN NE2 N N N 223 GLN OXT O N N 224 GLN H H N N 225 GLN H2 H N N 226 GLN HA H N N 227 GLN HB2 H N N 228 GLN HB3 H N N 229 GLN HG2 H N N 230 GLN HG3 H N N 231 GLN HE21 H N N 232 GLN HE22 H N N 233 GLN HXT H N N 234 GLU N N N N 235 GLU CA C N S 236 GLU C C N N 237 GLU O O N N 238 GLU CB C N N 239 GLU CG C N N 240 GLU CD C N N 241 GLU OE1 O N N 242 GLU OE2 O N N 243 GLU OXT O N N 244 GLU H H N N 245 GLU H2 H N N 246 GLU HA H N N 247 GLU HB2 H N N 248 GLU HB3 H N N 249 GLU HG2 H N N 250 GLU HG3 H N N 251 GLU HE2 H N N 252 GLU HXT H N N 253 GLY N N N N 254 GLY CA C N N 255 GLY C C N N 256 GLY O O N N 257 GLY OXT O N N 258 GLY H H N N 259 GLY H2 H N N 260 GLY HA2 H N N 261 GLY HA3 H N N 262 GLY HXT H N N 263 HIS N N N N 264 HIS CA C N S 265 HIS C C N N 266 HIS O O N N 267 HIS CB C N N 268 HIS CG C Y N 269 HIS ND1 N Y N 270 HIS CD2 C Y N 271 HIS CE1 C Y N 272 HIS NE2 N Y N 273 HIS OXT O N N 274 HIS H H N N 275 HIS H2 H N N 276 HIS HA H N N 277 HIS HB2 H N N 278 HIS HB3 H N N 279 HIS HD1 H N N 280 HIS HD2 H N N 281 HIS HE1 H N N 282 HIS HE2 H N N 283 HIS HXT H N N 284 HOH O O N N 285 HOH H1 H N N 286 HOH H2 H N N 287 ILE N N N N 288 ILE CA C N S 289 ILE C C N N 290 ILE O O N N 291 ILE CB C N S 292 ILE CG1 C N N 293 ILE CG2 C N N 294 ILE CD1 C N N 295 ILE OXT O N N 296 ILE H H N N 297 ILE H2 H N N 298 ILE HA H N N 299 ILE HB H N N 300 ILE HG12 H N N 301 ILE HG13 H N N 302 ILE HG21 H N N 303 ILE HG22 H N N 304 ILE HG23 H N N 305 ILE HD11 H N N 306 ILE HD12 H N N 307 ILE HD13 H N N 308 ILE HXT H N N 309 LEU N N N N 310 LEU CA C N S 311 LEU C C N N 312 LEU O O N N 313 LEU CB C N N 314 LEU CG C N N 315 LEU CD1 C N N 316 LEU CD2 C N N 317 LEU OXT O N N 318 LEU H H N N 319 LEU H2 H N N 320 LEU HA H N N 321 LEU HB2 H N N 322 LEU HB3 H N N 323 LEU HG H N N 324 LEU HD11 H N N 325 LEU HD12 H N N 326 LEU HD13 H N N 327 LEU HD21 H N N 328 LEU HD22 H N N 329 LEU HD23 H N N 330 LEU HXT H N N 331 LYS N N N N 332 LYS CA C N S 333 LYS C C N N 334 LYS O O N N 335 LYS CB C N N 336 LYS CG C N N 337 LYS CD C N N 338 LYS CE C N N 339 LYS NZ N N N 340 LYS OXT O N N 341 LYS H H N N 342 LYS H2 H N N 343 LYS HA H N N 344 LYS HB2 H N N 345 LYS HB3 H N N 346 LYS HG2 H N N 347 LYS HG3 H N N 348 LYS HD2 H N N 349 LYS HD3 H N N 350 LYS HE2 H N N 351 LYS HE3 H N N 352 LYS HZ1 H N N 353 LYS HZ2 H N N 354 LYS HZ3 H N N 355 LYS HXT H N N 356 MET N N N N 357 MET CA C N S 358 MET C C N N 359 MET O O N N 360 MET CB C N N 361 MET CG C N N 362 MET SD S N N 363 MET CE C N N 364 MET OXT O N N 365 MET H H N N 366 MET H2 H N N 367 MET HA H N N 368 MET HB2 H N N 369 MET HB3 H N N 370 MET HG2 H N N 371 MET HG3 H N N 372 MET HE1 H N N 373 MET HE2 H N N 374 MET HE3 H N N 375 MET HXT H N N 376 PHE N N N N 377 PHE CA C N S 378 PHE C C N N 379 PHE O O N N 380 PHE CB C N N 381 PHE CG C Y N 382 PHE CD1 C Y N 383 PHE CD2 C Y N 384 PHE CE1 C Y N 385 PHE CE2 C Y N 386 PHE CZ C Y N 387 PHE OXT O N N 388 PHE H H N N 389 PHE H2 H N N 390 PHE HA H N N 391 PHE HB2 H N N 392 PHE HB3 H N N 393 PHE HD1 H N N 394 PHE HD2 H N N 395 PHE HE1 H N N 396 PHE HE2 H N N 397 PHE HZ H N N 398 PHE HXT H N N 399 PRO N N N N 400 PRO CA C N S 401 PRO C C N N 402 PRO O O N N 403 PRO CB C N N 404 PRO CG C N N 405 PRO CD C N N 406 PRO OXT O N N 407 PRO H H N N 408 PRO HA H N N 409 PRO HB2 H N N 410 PRO HB3 H N N 411 PRO HG2 H N N 412 PRO HG3 H N N 413 PRO HD2 H N N 414 PRO HD3 H N N 415 PRO HXT H N N 416 SER N N N N 417 SER CA C N S 418 SER C C N N 419 SER O O N N 420 SER CB C N N 421 SER OG O N N 422 SER OXT O N N 423 SER H H N N 424 SER H2 H N N 425 SER HA H N N 426 SER HB2 H N N 427 SER HB3 H N N 428 SER HG H N N 429 SER HXT H N N 430 THR N N N N 431 THR CA C N S 432 THR C C N N 433 THR O O N N 434 THR CB C N R 435 THR OG1 O N N 436 THR CG2 C N N 437 THR OXT O N N 438 THR H H N N 439 THR H2 H N N 440 THR HA H N N 441 THR HB H N N 442 THR HG1 H N N 443 THR HG21 H N N 444 THR HG22 H N N 445 THR HG23 H N N 446 THR HXT H N N 447 TRP N N N N 448 TRP CA C N S 449 TRP C C N N 450 TRP O O N N 451 TRP CB C N N 452 TRP CG C Y N 453 TRP CD1 C Y N 454 TRP CD2 C Y N 455 TRP NE1 N Y N 456 TRP CE2 C Y N 457 TRP CE3 C Y N 458 TRP CZ2 C Y N 459 TRP CZ3 C Y N 460 TRP CH2 C Y N 461 TRP OXT O N N 462 TRP H H N N 463 TRP H2 H N N 464 TRP HA H N N 465 TRP HB2 H N N 466 TRP HB3 H N N 467 TRP HD1 H N N 468 TRP HE1 H N N 469 TRP HE3 H N N 470 TRP HZ2 H N N 471 TRP HZ3 H N N 472 TRP HH2 H N N 473 TRP HXT H N N 474 TYR N N N N 475 TYR CA C N S 476 TYR C C N N 477 TYR O O N N 478 TYR CB C N N 479 TYR CG C Y N 480 TYR CD1 C Y N 481 TYR CD2 C Y N 482 TYR CE1 C Y N 483 TYR CE2 C Y N 484 TYR CZ C Y N 485 TYR OH O N N 486 TYR OXT O N N 487 TYR H H N N 488 TYR H2 H N N 489 TYR HA H N N 490 TYR HB2 H N N 491 TYR HB3 H N N 492 TYR HD1 H N N 493 TYR HD2 H N N 494 TYR HE1 H N N 495 TYR HE2 H N N 496 TYR HH H N N 497 TYR HXT H N N 498 VAL N N N N 499 VAL CA C N S 500 VAL C C N N 501 VAL O O N N 502 VAL CB C N N 503 VAL CG1 C N N 504 VAL CG2 C N N 505 VAL OXT O N N 506 VAL H H N N 507 VAL H2 H N N 508 VAL HA H N N 509 VAL HB H N N 510 VAL HG11 H N N 511 VAL HG12 H N N 512 VAL HG13 H N N 513 VAL HG21 H N N 514 VAL HG22 H N N 515 VAL HG23 H N N 516 VAL HXT H N N 517 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 CYS N CA sing N N 55 CYS N H sing N N 56 CYS N H2 sing N N 57 CYS CA C sing N N 58 CYS CA CB sing N N 59 CYS CA HA sing N N 60 CYS C O doub N N 61 CYS C OXT sing N N 62 CYS CB SG sing N N 63 CYS CB HB2 sing N N 64 CYS CB HB3 sing N N 65 CYS SG HG sing N N 66 CYS OXT HXT sing N N 67 DA OP3 P sing N N 68 DA OP3 HOP3 sing N N 69 DA P OP1 doub N N 70 DA P OP2 sing N N 71 DA P "O5'" sing N N 72 DA OP2 HOP2 sing N N 73 DA "O5'" "C5'" sing N N 74 DA "C5'" "C4'" sing N N 75 DA "C5'" "H5'" sing N N 76 DA "C5'" "H5''" sing N N 77 DA "C4'" "O4'" sing N N 78 DA "C4'" "C3'" sing N N 79 DA "C4'" "H4'" sing N N 80 DA "O4'" "C1'" sing N N 81 DA "C3'" "O3'" sing N N 82 DA "C3'" "C2'" sing N N 83 DA "C3'" "H3'" sing N N 84 DA "O3'" "HO3'" sing N N 85 DA "C2'" "C1'" sing N N 86 DA "C2'" "H2'" sing N N 87 DA "C2'" "H2''" sing N N 88 DA "C1'" N9 sing N N 89 DA "C1'" "H1'" sing N N 90 DA N9 C8 sing Y N 91 DA N9 C4 sing Y N 92 DA C8 N7 doub Y N 93 DA C8 H8 sing N N 94 DA N7 C5 sing Y N 95 DA C5 C6 sing Y N 96 DA C5 C4 doub Y N 97 DA C6 N6 sing N N 98 DA C6 N1 doub Y N 99 DA N6 H61 sing N N 100 DA N6 H62 sing N N 101 DA N1 C2 sing Y N 102 DA C2 N3 doub Y N 103 DA C2 H2 sing N N 104 DA N3 C4 sing Y N 105 DC OP3 P sing N N 106 DC OP3 HOP3 sing N N 107 DC P OP1 doub N N 108 DC P OP2 sing N N 109 DC P "O5'" sing N N 110 DC OP2 HOP2 sing N N 111 DC "O5'" "C5'" sing N N 112 DC "C5'" "C4'" sing N N 113 DC "C5'" "H5'" sing N N 114 DC "C5'" "H5''" sing N N 115 DC "C4'" "O4'" sing N N 116 DC "C4'" "C3'" sing N N 117 DC "C4'" "H4'" sing N N 118 DC "O4'" "C1'" sing N N 119 DC "C3'" "O3'" sing N N 120 DC "C3'" "C2'" sing N N 121 DC "C3'" "H3'" sing N N 122 DC "O3'" "HO3'" sing N N 123 DC "C2'" "C1'" sing N N 124 DC "C2'" "H2'" sing N N 125 DC "C2'" "H2''" sing N N 126 DC "C1'" N1 sing N N 127 DC "C1'" "H1'" sing N N 128 DC N1 C2 sing N N 129 DC N1 C6 sing N N 130 DC C2 O2 doub N N 131 DC C2 N3 sing N N 132 DC N3 C4 doub N N 133 DC C4 N4 sing N N 134 DC C4 C5 sing N N 135 DC N4 H41 sing N N 136 DC N4 H42 sing N N 137 DC C5 C6 doub N N 138 DC C5 H5 sing N N 139 DC C6 H6 sing N N 140 DG OP3 P sing N N 141 DG OP3 HOP3 sing N N 142 DG P OP1 doub N N 143 DG P OP2 sing N N 144 DG P "O5'" sing N N 145 DG OP2 HOP2 sing N N 146 DG "O5'" "C5'" sing N N 147 DG "C5'" "C4'" sing N N 148 DG "C5'" "H5'" sing N N 149 DG "C5'" "H5''" sing N N 150 DG "C4'" "O4'" sing N N 151 DG "C4'" "C3'" sing N N 152 DG "C4'" "H4'" sing N N 153 DG "O4'" "C1'" sing N N 154 DG "C3'" "O3'" sing N N 155 DG "C3'" "C2'" sing N N 156 DG "C3'" "H3'" sing N N 157 DG "O3'" "HO3'" sing N N 158 DG "C2'" "C1'" sing N N 159 DG "C2'" "H2'" sing N N 160 DG "C2'" "H2''" sing N N 161 DG "C1'" N9 sing N N 162 DG "C1'" "H1'" sing N N 163 DG N9 C8 sing Y N 164 DG N9 C4 sing Y N 165 DG C8 N7 doub Y N 166 DG C8 H8 sing N N 167 DG N7 C5 sing Y N 168 DG C5 C6 sing N N 169 DG C5 C4 doub Y N 170 DG C6 O6 doub N N 171 DG C6 N1 sing N N 172 DG N1 C2 sing N N 173 DG N1 H1 sing N N 174 DG C2 N2 sing N N 175 DG C2 N3 doub N N 176 DG N2 H21 sing N N 177 DG N2 H22 sing N N 178 DG N3 C4 sing N N 179 DT OP3 P sing N N 180 DT OP3 HOP3 sing N N 181 DT P OP1 doub N N 182 DT P OP2 sing N N 183 DT P "O5'" sing N N 184 DT OP2 HOP2 sing N N 185 DT "O5'" "C5'" sing N N 186 DT "C5'" "C4'" sing N N 187 DT "C5'" "H5'" sing N N 188 DT "C5'" "H5''" sing N N 189 DT "C4'" "O4'" sing N N 190 DT "C4'" "C3'" sing N N 191 DT "C4'" "H4'" sing N N 192 DT "O4'" "C1'" sing N N 193 DT "C3'" "O3'" sing N N 194 DT "C3'" "C2'" sing N N 195 DT "C3'" "H3'" sing N N 196 DT "O3'" "HO3'" sing N N 197 DT "C2'" "C1'" sing N N 198 DT "C2'" "H2'" sing N N 199 DT "C2'" "H2''" sing N N 200 DT "C1'" N1 sing N N 201 DT "C1'" "H1'" sing N N 202 DT N1 C2 sing N N 203 DT N1 C6 sing N N 204 DT C2 O2 doub N N 205 DT C2 N3 sing N N 206 DT N3 C4 sing N N 207 DT N3 H3 sing N N 208 DT C4 O4 doub N N 209 DT C4 C5 sing N N 210 DT C5 C7 sing N N 211 DT C5 C6 doub N N 212 DT C7 H71 sing N N 213 DT C7 H72 sing N N 214 DT C7 H73 sing N N 215 DT C6 H6 sing N N 216 GLN N CA sing N N 217 GLN N H sing N N 218 GLN N H2 sing N N 219 GLN CA C sing N N 220 GLN CA CB sing N N 221 GLN CA HA sing N N 222 GLN C O doub N N 223 GLN C OXT sing N N 224 GLN CB CG sing N N 225 GLN CB HB2 sing N N 226 GLN CB HB3 sing N N 227 GLN CG CD sing N N 228 GLN CG HG2 sing N N 229 GLN CG HG3 sing N N 230 GLN CD OE1 doub N N 231 GLN CD NE2 sing N N 232 GLN NE2 HE21 sing N N 233 GLN NE2 HE22 sing N N 234 GLN OXT HXT sing N N 235 GLU N CA sing N N 236 GLU N H sing N N 237 GLU N H2 sing N N 238 GLU CA C sing N N 239 GLU CA CB sing N N 240 GLU CA HA sing N N 241 GLU C O doub N N 242 GLU C OXT sing N N 243 GLU CB CG sing N N 244 GLU CB HB2 sing N N 245 GLU CB HB3 sing N N 246 GLU CG CD sing N N 247 GLU CG HG2 sing N N 248 GLU CG HG3 sing N N 249 GLU CD OE1 doub N N 250 GLU CD OE2 sing N N 251 GLU OE2 HE2 sing N N 252 GLU OXT HXT sing N N 253 GLY N CA sing N N 254 GLY N H sing N N 255 GLY N H2 sing N N 256 GLY CA C sing N N 257 GLY CA HA2 sing N N 258 GLY CA HA3 sing N N 259 GLY C O doub N N 260 GLY C OXT sing N N 261 GLY OXT HXT sing N N 262 HIS N CA sing N N 263 HIS N H sing N N 264 HIS N H2 sing N N 265 HIS CA C sing N N 266 HIS CA CB sing N N 267 HIS CA HA sing N N 268 HIS C O doub N N 269 HIS C OXT sing N N 270 HIS CB CG sing N N 271 HIS CB HB2 sing N N 272 HIS CB HB3 sing N N 273 HIS CG ND1 sing Y N 274 HIS CG CD2 doub Y N 275 HIS ND1 CE1 doub Y N 276 HIS ND1 HD1 sing N N 277 HIS CD2 NE2 sing Y N 278 HIS CD2 HD2 sing N N 279 HIS CE1 NE2 sing Y N 280 HIS CE1 HE1 sing N N 281 HIS NE2 HE2 sing N N 282 HIS OXT HXT sing N N 283 HOH O H1 sing N N 284 HOH O H2 sing N N 285 ILE N CA sing N N 286 ILE N H sing N N 287 ILE N H2 sing N N 288 ILE CA C sing N N 289 ILE CA CB sing N N 290 ILE CA HA sing N N 291 ILE C O doub N N 292 ILE C OXT sing N N 293 ILE CB CG1 sing N N 294 ILE CB CG2 sing N N 295 ILE CB HB sing N N 296 ILE CG1 CD1 sing N N 297 ILE CG1 HG12 sing N N 298 ILE CG1 HG13 sing N N 299 ILE CG2 HG21 sing N N 300 ILE CG2 HG22 sing N N 301 ILE CG2 HG23 sing N N 302 ILE CD1 HD11 sing N N 303 ILE CD1 HD12 sing N N 304 ILE CD1 HD13 sing N N 305 ILE OXT HXT sing N N 306 LEU N CA sing N N 307 LEU N H sing N N 308 LEU N H2 sing N N 309 LEU CA C sing N N 310 LEU CA CB sing N N 311 LEU CA HA sing N N 312 LEU C O doub N N 313 LEU C OXT sing N N 314 LEU CB CG sing N N 315 LEU CB HB2 sing N N 316 LEU CB HB3 sing N N 317 LEU CG CD1 sing N N 318 LEU CG CD2 sing N N 319 LEU CG HG sing N N 320 LEU CD1 HD11 sing N N 321 LEU CD1 HD12 sing N N 322 LEU CD1 HD13 sing N N 323 LEU CD2 HD21 sing N N 324 LEU CD2 HD22 sing N N 325 LEU CD2 HD23 sing N N 326 LEU OXT HXT sing N N 327 LYS N CA sing N N 328 LYS N H sing N N 329 LYS N H2 sing N N 330 LYS CA C sing N N 331 LYS CA CB sing N N 332 LYS CA HA sing N N 333 LYS C O doub N N 334 LYS C OXT sing N N 335 LYS CB CG sing N N 336 LYS CB HB2 sing N N 337 LYS CB HB3 sing N N 338 LYS CG CD sing N N 339 LYS CG HG2 sing N N 340 LYS CG HG3 sing N N 341 LYS CD CE sing N N 342 LYS CD HD2 sing N N 343 LYS CD HD3 sing N N 344 LYS CE NZ sing N N 345 LYS CE HE2 sing N N 346 LYS CE HE3 sing N N 347 LYS NZ HZ1 sing N N 348 LYS NZ HZ2 sing N N 349 LYS NZ HZ3 sing N N 350 LYS OXT HXT sing N N 351 MET N CA sing N N 352 MET N H sing N N 353 MET N H2 sing N N 354 MET CA C sing N N 355 MET CA CB sing N N 356 MET CA HA sing N N 357 MET C O doub N N 358 MET C OXT sing N N 359 MET CB CG sing N N 360 MET CB HB2 sing N N 361 MET CB HB3 sing N N 362 MET CG SD sing N N 363 MET CG HG2 sing N N 364 MET CG HG3 sing N N 365 MET SD CE sing N N 366 MET CE HE1 sing N N 367 MET CE HE2 sing N N 368 MET CE HE3 sing N N 369 MET OXT HXT sing N N 370 PHE N CA sing N N 371 PHE N H sing N N 372 PHE N H2 sing N N 373 PHE CA C sing N N 374 PHE CA CB sing N N 375 PHE CA HA sing N N 376 PHE C O doub N N 377 PHE C OXT sing N N 378 PHE CB CG sing N N 379 PHE CB HB2 sing N N 380 PHE CB HB3 sing N N 381 PHE CG CD1 doub Y N 382 PHE CG CD2 sing Y N 383 PHE CD1 CE1 sing Y N 384 PHE CD1 HD1 sing N N 385 PHE CD2 CE2 doub Y N 386 PHE CD2 HD2 sing N N 387 PHE CE1 CZ doub Y N 388 PHE CE1 HE1 sing N N 389 PHE CE2 CZ sing Y N 390 PHE CE2 HE2 sing N N 391 PHE CZ HZ sing N N 392 PHE OXT HXT sing N N 393 PRO N CA sing N N 394 PRO N CD sing N N 395 PRO N H sing N N 396 PRO CA C sing N N 397 PRO CA CB sing N N 398 PRO CA HA sing N N 399 PRO C O doub N N 400 PRO C OXT sing N N 401 PRO CB CG sing N N 402 PRO CB HB2 sing N N 403 PRO CB HB3 sing N N 404 PRO CG CD sing N N 405 PRO CG HG2 sing N N 406 PRO CG HG3 sing N N 407 PRO CD HD2 sing N N 408 PRO CD HD3 sing N N 409 PRO OXT HXT sing N N 410 SER N CA sing N N 411 SER N H sing N N 412 SER N H2 sing N N 413 SER CA C sing N N 414 SER CA CB sing N N 415 SER CA HA sing N N 416 SER C O doub N N 417 SER C OXT sing N N 418 SER CB OG sing N N 419 SER CB HB2 sing N N 420 SER CB HB3 sing N N 421 SER OG HG sing N N 422 SER OXT HXT sing N N 423 THR N CA sing N N 424 THR N H sing N N 425 THR N H2 sing N N 426 THR CA C sing N N 427 THR CA CB sing N N 428 THR CA HA sing N N 429 THR C O doub N N 430 THR C OXT sing N N 431 THR CB OG1 sing N N 432 THR CB CG2 sing N N 433 THR CB HB sing N N 434 THR OG1 HG1 sing N N 435 THR CG2 HG21 sing N N 436 THR CG2 HG22 sing N N 437 THR CG2 HG23 sing N N 438 THR OXT HXT sing N N 439 TRP N CA sing N N 440 TRP N H sing N N 441 TRP N H2 sing N N 442 TRP CA C sing N N 443 TRP CA CB sing N N 444 TRP CA HA sing N N 445 TRP C O doub N N 446 TRP C OXT sing N N 447 TRP CB CG sing N N 448 TRP CB HB2 sing N N 449 TRP CB HB3 sing N N 450 TRP CG CD1 doub Y N 451 TRP CG CD2 sing Y N 452 TRP CD1 NE1 sing Y N 453 TRP CD1 HD1 sing N N 454 TRP CD2 CE2 doub Y N 455 TRP CD2 CE3 sing Y N 456 TRP NE1 CE2 sing Y N 457 TRP NE1 HE1 sing N N 458 TRP CE2 CZ2 sing Y N 459 TRP CE3 CZ3 doub Y N 460 TRP CE3 HE3 sing N N 461 TRP CZ2 CH2 doub Y N 462 TRP CZ2 HZ2 sing N N 463 TRP CZ3 CH2 sing Y N 464 TRP CZ3 HZ3 sing N N 465 TRP CH2 HH2 sing N N 466 TRP OXT HXT sing N N 467 TYR N CA sing N N 468 TYR N H sing N N 469 TYR N H2 sing N N 470 TYR CA C sing N N 471 TYR CA CB sing N N 472 TYR CA HA sing N N 473 TYR C O doub N N 474 TYR C OXT sing N N 475 TYR CB CG sing N N 476 TYR CB HB2 sing N N 477 TYR CB HB3 sing N N 478 TYR CG CD1 doub Y N 479 TYR CG CD2 sing Y N 480 TYR CD1 CE1 sing Y N 481 TYR CD1 HD1 sing N N 482 TYR CD2 CE2 doub Y N 483 TYR CD2 HD2 sing N N 484 TYR CE1 CZ doub Y N 485 TYR CE1 HE1 sing N N 486 TYR CE2 CZ sing Y N 487 TYR CE2 HE2 sing N N 488 TYR CZ OH sing N N 489 TYR OH HH sing N N 490 TYR OXT HXT sing N N 491 VAL N CA sing N N 492 VAL N H sing N N 493 VAL N H2 sing N N 494 VAL CA C sing N N 495 VAL CA CB sing N N 496 VAL CA HA sing N N 497 VAL C O doub N N 498 VAL C OXT sing N N 499 VAL CB CG1 sing N N 500 VAL CB CG2 sing N N 501 VAL CB HB sing N N 502 VAL CG1 HG11 sing N N 503 VAL CG1 HG12 sing N N 504 VAL CG1 HG13 sing N N 505 VAL CG2 HG21 sing N N 506 VAL CG2 HG22 sing N N 507 VAL CG2 HG23 sing N N 508 VAL OXT HXT sing N N 509 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2R5Y 'double helix' 2R5Y 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 20 1_555 -0.780 0.172 -0.064 -4.379 -16.613 10.521 1 C_DC2:DG40_D C 2 ? D 40 ? ? 1 1 A DT 3 1_555 B DA 19 1_555 -0.062 0.457 0.189 -10.384 -26.878 0.301 2 C_DT3:DA39_D C 3 ? D 39 ? ? ? 1 A DC 4 1_555 B DG 18 1_555 -0.046 0.318 0.263 -9.820 -6.338 8.605 3 C_DC4:DG38_D C 4 ? D 38 ? ? 1 1 A DT 5 1_555 B DA 17 1_555 0.038 -0.001 0.238 1.866 -25.109 -1.405 4 C_DT5:DA37_D C 5 ? D 37 ? 20 1 1 A DA 6 1_555 B DT 16 1_555 -0.152 0.212 0.027 -5.807 -9.809 2.069 5 C_DA6:DT36_D C 6 ? D 36 ? 20 1 1 A DT 7 1_555 B DA 15 1_555 -0.042 -0.039 -0.141 -0.380 -10.146 7.728 6 C_DT7:DA35_D C 7 ? D 35 ? 20 1 1 A DG 8 1_555 B DC 14 1_555 0.239 -0.023 0.070 4.046 -9.199 -1.657 7 C_DG8:DC34_D C 8 ? D 34 ? 19 1 1 A DA 9 1_555 B DT 13 1_555 0.105 -0.042 -0.324 -3.760 -9.421 2.798 8 C_DA9:DT33_D C 9 ? D 33 ? 20 1 1 A DT 10 1_555 B DA 12 1_555 0.049 -0.047 -0.113 -0.021 -16.571 -1.241 9 C_DT10:DA32_D C 10 ? D 32 ? 20 1 1 A DT 11 1_555 B DA 11 1_555 -0.319 -0.278 0.183 -10.749 -18.787 -0.841 10 C_DT11:DA31_D C 11 ? D 31 ? 20 1 1 A DT 12 1_555 B DA 10 1_555 -0.041 -0.315 -0.278 -3.106 -13.996 4.943 11 C_DT12:DA30_D C 12 ? D 30 ? 20 1 1 A DA 13 1_555 B DT 9 1_555 -0.249 -0.060 -0.103 -11.071 -7.709 3.521 12 C_DA13:DT29_D C 13 ? D 29 ? 20 1 1 A DT 14 1_555 B DA 8 1_555 -0.406 -0.048 -0.093 -4.259 -5.334 -2.500 13 C_DT14:DA28_D C 14 ? D 28 ? 20 1 1 A DG 15 1_555 B DC 7 1_555 0.380 -0.313 0.137 0.610 -4.247 1.067 14 C_DG15:DC27_D C 15 ? D 27 ? 19 1 1 A DG 16 1_555 B DC 6 1_555 0.020 -0.454 0.235 6.569 -2.147 -2.705 15 C_DG16:DC26_D C 16 ? D 26 ? 19 1 1 A DG 17 1_555 B DC 5 1_555 -0.121 -0.002 -0.146 -0.630 -13.676 1.041 16 C_DG17:DC25_D C 17 ? D 25 ? 19 1 1 A DC 18 1_555 B DG 4 1_555 -0.462 0.930 0.509 -9.376 -4.729 16.472 17 C_DC18:DG24_D C 18 ? D 24 ? ? 1 1 A DG 20 1_555 B DC 2 1_555 -0.940 -0.097 -0.011 -3.136 -17.968 10.748 18 C_DG20:DC22_D C 20 ? D 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 20 1_555 A DT 3 1_555 B DA 19 1_555 -0.625 0.468 3.472 -1.995 3.079 40.657 0.307 0.661 3.522 4.420 2.864 40.815 1 CC_DC2DT3:DA39DG40_DD C 2 ? D 40 ? C 3 ? D 39 ? 1 A DT 3 1_555 B DA 19 1_555 A DC 4 1_555 B DG 18 1_555 1.014 1.313 3.524 2.443 -5.794 39.562 2.621 -1.185 3.361 -8.495 -3.581 40.039 2 CC_DT3DC4:DG38DA39_DD C 3 ? D 39 ? C 4 ? D 38 ? 1 A DC 4 1_555 B DG 18 1_555 A DT 5 1_555 B DA 17 1_555 -1.301 0.498 2.970 -0.022 -1.404 34.827 1.025 2.169 2.949 -2.345 0.037 34.855 3 CC_DC4DT5:DA37DG38_DD C 4 ? D 38 ? C 5 ? D 37 ? 1 A DT 5 1_555 B DA 17 1_555 A DA 6 1_555 B DT 16 1_555 1.097 1.497 3.543 2.207 -8.774 44.653 2.746 -1.214 3.256 -11.409 -2.870 45.514 4 CC_DT5DA6:DT36DA37_DD C 5 ? D 37 ? C 6 ? D 36 ? 1 A DA 6 1_555 B DT 16 1_555 A DT 7 1_555 B DA 15 1_555 -0.044 -0.179 3.201 2.411 3.995 29.408 -1.164 0.577 3.136 7.807 -4.712 29.768 5 CC_DA6DT7:DA35DT36_DD C 6 ? D 36 ? C 7 ? D 35 ? 1 A DT 7 1_555 B DA 15 1_555 A DG 8 1_555 B DC 14 1_555 -0.593 0.281 3.190 -4.295 10.363 37.041 -0.850 0.368 3.198 15.871 6.579 38.645 6 CC_DT7DG8:DC34DA35_DD C 7 ? D 35 ? C 8 ? D 34 ? 1 A DG 8 1_555 B DC 14 1_555 A DA 9 1_555 B DT 13 1_555 0.565 -0.499 3.417 5.667 0.921 37.205 -0.899 -0.098 3.450 1.433 -8.817 37.630 7 CC_DG8DA9:DT33DC34_DD C 8 ? D 34 ? C 9 ? D 33 ? 1 A DA 9 1_555 B DT 13 1_555 A DT 10 1_555 B DA 12 1_555 -0.446 -0.645 3.170 -1.239 1.376 32.158 -1.400 0.590 3.155 2.482 2.235 32.210 8 CC_DA9DT10:DA32DT33_DD C 9 ? D 33 ? C 10 ? D 32 ? 1 A DT 10 1_555 B DA 12 1_555 A DT 11 1_555 B DA 11 1_555 -0.026 -0.155 3.519 -1.500 0.964 35.303 -0.408 -0.196 3.511 1.588 2.472 35.346 9 CC_DT10DT11:DA31DA32_DD C 10 ? D 32 ? C 11 ? D 31 ? 1 A DT 11 1_555 B DA 11 1_555 A DT 12 1_555 B DA 10 1_555 -0.141 0.078 3.053 2.505 7.672 34.286 -0.940 0.582 2.983 12.795 -4.177 35.195 10 CC_DT11DT12:DA30DA31_DD C 11 ? D 31 ? C 12 ? D 30 ? 1 A DT 12 1_555 B DA 10 1_555 A DA 13 1_555 B DT 9 1_555 0.714 -0.805 3.512 -0.053 7.554 33.043 -2.655 -1.234 3.253 13.069 0.092 33.872 11 CC_DT12DA13:DT29DA30_DD C 12 ? D 30 ? C 13 ? D 29 ? 1 A DA 13 1_555 B DT 9 1_555 A DT 14 1_555 B DA 8 1_555 -1.075 -0.880 3.100 -0.200 2.842 31.748 -2.087 1.923 3.018 5.183 0.366 31.873 12 CC_DA13DT14:DA28DT29_DD C 13 ? D 29 ? C 14 ? D 28 ? 1 A DT 14 1_555 B DA 8 1_555 A DG 15 1_555 B DC 7 1_555 0.198 0.124 3.233 -0.604 7.226 34.014 -0.888 -0.423 3.188 12.180 1.018 34.756 13 CC_DT14DG15:DC27DA28_DD C 14 ? D 28 ? C 15 ? D 27 ? 1 A DG 15 1_555 B DC 7 1_555 A DG 16 1_555 B DC 6 1_555 -0.549 -0.086 3.212 -3.068 1.786 31.596 -0.481 0.448 3.240 3.267 5.611 31.790 14 CC_DG15DG16:DC26DC27_DD C 15 ? D 27 ? C 16 ? D 26 ? 1 A DG 16 1_555 B DC 6 1_555 A DG 17 1_555 B DC 5 1_555 0.084 0.075 3.619 1.004 7.501 35.680 -1.035 0.021 3.562 12.075 -1.615 36.448 15 CC_DG16DG17:DC25DC26_DD C 16 ? D 26 ? C 17 ? D 25 ? 1 A DG 17 1_555 B DC 5 1_555 A DC 18 1_555 B DG 4 1_555 0.907 -0.341 3.320 -2.312 3.340 34.213 -1.096 -1.891 3.207 5.652 3.913 34.446 16 CC_DG17DC18:DG24DC25_DD C 17 ? D 25 ? C 18 ? D 24 ? 1 A DC 18 1_555 B DG 4 1_555 A DG 20 1_555 B DC 2 1_555 -1.203 2.797 6.620 7.496 -2.624 74.797 2.453 1.442 6.408 -2.155 -6.154 75.156 17 CC_DC18DG20:DC22DG24_DD C 18 ? D 24 ? C 20 ? D 22 ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1B8I _pdbx_initial_refinement_model.details 'PDB entry 1B8I' #