data_2RDV # _entry.id 2RDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RDV pdb_00002rdv 10.2210/pdb2rdv/pdb WWPDB D_1000178552 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2RDV _pdbx_database_status.recvd_initial_deposition_date 1998-10-07 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Higuchi, Y.' 1 'Yasuoka, N.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.' 'Acta Crystallogr.,Sect.D' 55 408 413 1999 ABCRE6 DK 0907-4449 0766 ? 10089348 10.1107/S0907444998011810 1 'Preliminary Crystallographic Study of Two Crystal Forms of Rubredoxin from Sulfate-Reducing Bactrium' 'Protein Pept.Lett.' 5 175 ? 1998 PPELEN NE 0929-8665 2077 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Misaki, S.' 1 ? primary 'Morimoto, Y.' 2 ? primary 'Ogata, M.' 3 ? primary 'Yagi, T.' 4 ? primary 'Higuchi, Y.' 5 ? primary 'Yasuoka, N.' 6 ? 1 'Higuchi, Y.' 7 ? 1 'Sugiyama, M.S.' 8 ? 1 'Morimoto, S.' 9 ? 1 'Ogata, Y.' 10 ? 1 'Yagi, M.' 11 ? 1 'Yasuoka, T.' 12 ? # _cell.entry_id 2RDV _cell.length_a 27.300 _cell.length_b 44.900 _cell.length_c 51.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.60 _cell.angle_gamma 90.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RDV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat RUBREDOXIN 5602.237 3 ? ? ? ? 2 non-polymer syn 'FE (III) ION' 55.845 3 ? ? ? ? 3 water nat water 18.015 86 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MKKYVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEPA _entity_poly.pdbx_seq_one_letter_code_can MKKYVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEPA _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 TYR n 1 5 VAL n 1 6 CYS n 1 7 THR n 1 8 VAL n 1 9 CYS n 1 10 GLY n 1 11 TYR n 1 12 GLU n 1 13 TYR n 1 14 ASP n 1 15 PRO n 1 16 ALA n 1 17 GLU n 1 18 GLY n 1 19 ASP n 1 20 PRO n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 VAL n 1 25 LYS n 1 26 PRO n 1 27 GLY n 1 28 THR n 1 29 ALA n 1 30 PHE n 1 31 GLU n 1 32 ASP n 1 33 VAL n 1 34 PRO n 1 35 ALA n 1 36 ASP n 1 37 TRP n 1 38 VAL n 1 39 CYS n 1 40 PRO n 1 41 ILE n 1 42 CYS n 1 43 GLY n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 SER n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 PRO n 1 52 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific ;Desulfovibrio vulgaris str. 'Miyazaki F' ; _entity_src_nat.pdbx_ncbi_taxonomy_id 883 _entity_src_nat.genus Desulfovibrio _entity_src_nat.species 'Desulfovibrio vulgaris' _entity_src_nat.strain 'MIYAZAKI F' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'IAM 12604' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_DESVM _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P15412 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code MKKYVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEPA _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2RDV A 1 ? 52 ? P15412 1 ? 52 ? 1 52 2 1 2RDV B 1 ? 52 ? P15412 1 ? 52 ? 1 52 3 1 2RDV C 1 ? 52 ? P15412 1 ? 52 ? 1 52 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2RDV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.87 _exptl_crystal.density_percent_sol 34.2 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.4' # _diffrn.id 1 _diffrn.ambient_temp 288 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type FUJI _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-6A _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2RDV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.9 _reflns.number_obs 53316 _reflns.number_all ? _reflns.percent_possible_obs 82.5 _reflns.pdbx_Rmerge_I_obs 0.1110000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2RDV _refine.ls_number_reflns_obs 9604 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs 82.5 _refine.ls_R_factor_obs 0.1750000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1750000 _refine.ls_R_factor_R_free 0.2160000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 14.1 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1RDV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1173 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 1262 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.807 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.633 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? -0.541000 0.840000 0.023000 -0.840000 -0.542000 0.027000 0.036000 -0.005000 0.999000 8.02800 3.19800 -34.31000 2 given ? -0.502000 -0.864000 -0.030000 0.864000 -0.503000 0.007000 -0.021000 -0.022000 1.000000 8.87000 -5.09600 -16.95300 # _struct.entry_id 2RDV _struct.title 'RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, MONOCLINIC CRYSTAL FORM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RDV _struct_keywords.pdbx_keywords 'ELECTRON TRANSFER' _struct_keywords.text 'RUBREDOXIN, COMPND, ELECTRON TRANSFER PROTEIN, METALLOPROTEIN, SULFATE-REDUCING BACTERIUM, ELECTRON TRANSFER' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? # loop_ _struct_biol.id 1 2 3 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? ASN A 22 ? PRO A 20 ASN A 22 5 ? 3 HELX_P HELX_P2 2 PHE A 30 ? ASP A 32 ? PHE A 30 ASP A 32 5 ? 3 HELX_P HELX_P3 3 LYS A 46 ? GLU A 48 ? LYS A 46 GLU A 48 5 ? 3 HELX_P HELX_P4 4 PRO B 20 ? ASN B 22 ? PRO B 20 ASN B 22 5 ? 3 HELX_P HELX_P5 5 PHE B 30 ? ASP B 32 ? PHE B 30 ASP B 32 5 ? 3 HELX_P HELX_P6 6 LYS B 46 ? GLU B 48 ? LYS B 46 GLU B 48 5 ? 3 HELX_P HELX_P7 7 PRO C 20 ? ASN C 22 ? PRO C 20 ASN C 22 5 ? 3 HELX_P HELX_P8 8 PHE C 30 ? ASP C 32 ? PHE C 30 ASP C 32 5 ? 3 HELX_P HELX_P9 9 LYS C 46 ? GLU C 48 ? LYS C 46 GLU C 48 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 6 SG ? ? ? 1_555 D FE . FE ? ? A CYS 6 A FE 53 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc2 metalc ? ? A CYS 9 SG ? ? ? 1_555 D FE . FE ? ? A CYS 9 A FE 53 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc3 metalc ? ? A CYS 39 SG ? ? ? 1_555 D FE . FE ? ? A CYS 39 A FE 53 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc4 metalc ? ? A CYS 42 SG ? ? ? 1_555 D FE . FE ? ? A CYS 42 A FE 53 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc5 metalc ? ? B CYS 6 SG ? ? ? 1_555 E FE . FE ? ? B CYS 6 B FE 53 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc6 metalc ? ? B CYS 9 SG ? ? ? 1_555 E FE . FE ? ? B CYS 9 B FE 53 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc7 metalc ? ? B CYS 39 SG ? ? ? 1_555 E FE . FE ? ? B CYS 39 B FE 53 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc8 metalc ? ? B CYS 42 SG ? ? ? 1_555 E FE . FE ? ? B CYS 42 B FE 53 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc9 metalc ? ? C CYS 6 SG ? ? ? 1_555 F FE . FE ? ? C CYS 6 C FE 53 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc10 metalc ? ? C CYS 9 SG ? ? ? 1_555 F FE . FE ? ? C CYS 9 C FE 53 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc11 metalc ? ? C CYS 39 SG ? ? ? 1_555 F FE . FE ? ? C CYS 39 C FE 53 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc12 metalc ? ? C CYS 42 SG ? ? ? 1_555 F FE . FE ? ? C CYS 42 C FE 53 1_555 ? ? ? ? ? ? ? 2.293 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 4 ? CYS A 6 ? TYR A 4 CYS A 6 A 2 PHE A 49 ? PRO A 51 ? PHE A 49 PRO A 51 B 1 TYR B 4 ? CYS B 6 ? TYR B 4 CYS B 6 B 2 PHE B 49 ? PRO B 51 ? PHE B 49 PRO B 51 C 1 LYS C 3 ? CYS C 6 ? LYS C 3 CYS C 6 C 2 PHE C 49 ? ALA C 52 ? PHE C 49 ALA C 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 5 ? O VAL A 5 N GLU A 50 ? N GLU A 50 B 1 2 O VAL B 5 ? O VAL B 5 N GLU B 50 ? N GLU B 50 C 1 2 O LYS C 3 ? O LYS C 3 N ALA C 52 ? N ALA C 52 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details FEA Unknown ? ? ? ? 4 'FE COORDINATION SITE, CHAIN A.' FEB Unknown ? ? ? ? 4 'FE COORDINATION SITE, CHAIN B.' FEC Unknown ? ? ? ? 4 'FE COORDINATION SITE, CHAIN C.' AC1 Software A FE 53 ? 4 'BINDING SITE FOR RESIDUE FE A 53' AC2 Software B FE 53 ? 4 'BINDING SITE FOR RESIDUE FE B 53' AC3 Software C FE 53 ? 4 'BINDING SITE FOR RESIDUE FE C 53' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 FEA 4 CYS A 6 ? CYS A 6 . ? 1_555 ? 2 FEA 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 3 FEA 4 CYS A 39 ? CYS A 39 . ? 1_555 ? 4 FEA 4 CYS A 42 ? CYS A 42 . ? 1_555 ? 5 FEB 4 CYS B 6 ? CYS B 6 . ? 1_555 ? 6 FEB 4 CYS B 9 ? CYS B 9 . ? 1_555 ? 7 FEB 4 CYS B 39 ? CYS B 39 . ? 1_555 ? 8 FEB 4 CYS B 42 ? CYS B 42 . ? 1_555 ? 9 FEC 4 CYS C 6 ? CYS C 6 . ? 1_555 ? 10 FEC 4 CYS C 9 ? CYS C 9 . ? 1_555 ? 11 FEC 4 CYS C 39 ? CYS C 39 . ? 1_555 ? 12 FEC 4 CYS C 42 ? CYS C 42 . ? 1_555 ? 13 AC1 4 CYS A 6 ? CYS A 6 . ? 1_555 ? 14 AC1 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 15 AC1 4 CYS A 39 ? CYS A 39 . ? 1_555 ? 16 AC1 4 CYS A 42 ? CYS A 42 . ? 1_555 ? 17 AC2 4 CYS B 6 ? CYS B 6 . ? 1_555 ? 18 AC2 4 CYS B 9 ? CYS B 9 . ? 1_555 ? 19 AC2 4 CYS B 39 ? CYS B 39 . ? 1_555 ? 20 AC2 4 CYS B 42 ? CYS B 42 . ? 1_555 ? 21 AC3 4 CYS C 6 ? CYS C 6 . ? 1_555 ? 22 AC3 4 CYS C 9 ? CYS C 9 . ? 1_555 ? 23 AC3 4 CYS C 39 ? CYS C 39 . ? 1_555 ? 24 AC3 4 CYS C 42 ? CYS C 42 . ? 1_555 ? # _database_PDB_matrix.entry_id 2RDV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2RDV _atom_sites.fract_transf_matrix[1][1] 0.036630 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000384 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022272 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019532 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 ALA 52 52 52 ALA ALA A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 TYR 4 4 4 TYR TYR B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 CYS 6 6 6 CYS CYS B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 CYS 9 9 9 CYS CYS B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 TYR 11 11 11 TYR TYR B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 TYR 13 13 13 TYR TYR B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 PRO 15 15 15 PRO PRO B . n B 1 16 ALA 16 16 16 ALA ALA B . n B 1 17 GLU 17 17 17 GLU GLU B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 ASP 19 19 19 ASP ASP B . n B 1 20 PRO 20 20 20 PRO PRO B . n B 1 21 ASP 21 21 21 ASP ASP B . n B 1 22 ASN 22 22 22 ASN ASN B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 LYS 25 25 25 LYS LYS B . n B 1 26 PRO 26 26 26 PRO PRO B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 THR 28 28 28 THR THR B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 PHE 30 30 30 PHE PHE B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 ASP 32 32 32 ASP ASP B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 PRO 34 34 34 PRO PRO B . n B 1 35 ALA 35 35 35 ALA ALA B . n B 1 36 ASP 36 36 36 ASP ASP B . n B 1 37 TRP 37 37 37 TRP TRP B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 CYS 39 39 39 CYS CYS B . n B 1 40 PRO 40 40 40 PRO PRO B . n B 1 41 ILE 41 41 41 ILE ILE B . n B 1 42 CYS 42 42 42 CYS CYS B . n B 1 43 GLY 43 43 43 GLY GLY B . n B 1 44 ALA 44 44 44 ALA ALA B . n B 1 45 PRO 45 45 45 PRO PRO B . n B 1 46 LYS 46 46 46 LYS LYS B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 GLU 48 48 48 GLU GLU B . n B 1 49 PHE 49 49 49 PHE PHE B . n B 1 50 GLU 50 50 50 GLU GLU B . n B 1 51 PRO 51 51 51 PRO PRO B . n B 1 52 ALA 52 52 52 ALA ALA B . n C 1 1 MET 1 1 1 MET MET C . n C 1 2 LYS 2 2 2 LYS LYS C . n C 1 3 LYS 3 3 3 LYS LYS C . n C 1 4 TYR 4 4 4 TYR TYR C . n C 1 5 VAL 5 5 5 VAL VAL C . n C 1 6 CYS 6 6 6 CYS CYS C . n C 1 7 THR 7 7 7 THR THR C . n C 1 8 VAL 8 8 8 VAL VAL C . n C 1 9 CYS 9 9 9 CYS CYS C . n C 1 10 GLY 10 10 10 GLY GLY C . n C 1 11 TYR 11 11 11 TYR TYR C . n C 1 12 GLU 12 12 12 GLU GLU C . n C 1 13 TYR 13 13 13 TYR TYR C . n C 1 14 ASP 14 14 14 ASP ASP C . n C 1 15 PRO 15 15 15 PRO PRO C . n C 1 16 ALA 16 16 16 ALA ALA C . n C 1 17 GLU 17 17 17 GLU GLU C . n C 1 18 GLY 18 18 18 GLY GLY C . n C 1 19 ASP 19 19 19 ASP ASP C . n C 1 20 PRO 20 20 20 PRO PRO C . n C 1 21 ASP 21 21 21 ASP ASP C . n C 1 22 ASN 22 22 22 ASN ASN C . n C 1 23 GLY 23 23 23 GLY GLY C . n C 1 24 VAL 24 24 24 VAL VAL C . n C 1 25 LYS 25 25 25 LYS LYS C . n C 1 26 PRO 26 26 26 PRO PRO C . n C 1 27 GLY 27 27 27 GLY GLY C . n C 1 28 THR 28 28 28 THR THR C . n C 1 29 ALA 29 29 29 ALA ALA C . n C 1 30 PHE 30 30 30 PHE PHE C . n C 1 31 GLU 31 31 31 GLU GLU C . n C 1 32 ASP 32 32 32 ASP ASP C . n C 1 33 VAL 33 33 33 VAL VAL C . n C 1 34 PRO 34 34 34 PRO PRO C . n C 1 35 ALA 35 35 35 ALA ALA C . n C 1 36 ASP 36 36 36 ASP ASP C . n C 1 37 TRP 37 37 37 TRP TRP C . n C 1 38 VAL 38 38 38 VAL VAL C . n C 1 39 CYS 39 39 39 CYS CYS C . n C 1 40 PRO 40 40 40 PRO PRO C . n C 1 41 ILE 41 41 41 ILE ILE C . n C 1 42 CYS 42 42 42 CYS CYS C . n C 1 43 GLY 43 43 43 GLY GLY C . n C 1 44 ALA 44 44 44 ALA ALA C . n C 1 45 PRO 45 45 45 PRO PRO C . n C 1 46 LYS 46 46 46 LYS LYS C . n C 1 47 SER 47 47 47 SER SER C . n C 1 48 GLU 48 48 48 GLU GLU C . n C 1 49 PHE 49 49 49 PHE PHE C . n C 1 50 GLU 50 50 50 GLU GLU C . n C 1 51 PRO 51 51 51 PRO PRO C . n C 1 52 ALA 52 52 52 ALA ALA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE 1 53 53 FE FE A . E 2 FE 1 53 53 FE FE B . F 2 FE 1 53 53 FE FE C . G 3 HOH 1 54 1 HOH HOH A . G 3 HOH 2 55 2 HOH HOH A . G 3 HOH 3 56 3 HOH HOH A . G 3 HOH 4 57 4 HOH HOH A . G 3 HOH 5 58 5 HOH HOH A . G 3 HOH 6 59 6 HOH HOH A . G 3 HOH 7 60 7 HOH HOH A . G 3 HOH 8 61 8 HOH HOH A . G 3 HOH 9 62 9 HOH HOH A . G 3 HOH 10 63 10 HOH HOH A . G 3 HOH 11 64 11 HOH HOH A . G 3 HOH 12 65 12 HOH HOH A . G 3 HOH 13 66 13 HOH HOH A . G 3 HOH 14 67 14 HOH HOH A . G 3 HOH 15 68 15 HOH HOH A . G 3 HOH 16 69 17 HOH HOH A . G 3 HOH 17 70 18 HOH HOH A . G 3 HOH 18 71 19 HOH HOH A . G 3 HOH 19 72 21 HOH HOH A . G 3 HOH 20 73 23 HOH HOH A . G 3 HOH 21 74 24 HOH HOH A . G 3 HOH 22 75 26 HOH HOH A . G 3 HOH 23 76 28 HOH HOH A . G 3 HOH 24 77 30 HOH HOH A . G 3 HOH 25 78 33 HOH HOH A . G 3 HOH 26 79 34 HOH HOH A . G 3 HOH 27 80 65 HOH HOH A . G 3 HOH 28 81 67 HOH HOH A . G 3 HOH 29 82 76 HOH HOH A . G 3 HOH 30 83 79 HOH HOH A . G 3 HOH 31 84 80 HOH HOH A . H 3 HOH 1 54 16 HOH HOH B . H 3 HOH 2 55 29 HOH HOH B . H 3 HOH 3 56 36 HOH HOH B . H 3 HOH 4 57 37 HOH HOH B . H 3 HOH 5 58 39 HOH HOH B . H 3 HOH 6 59 40 HOH HOH B . H 3 HOH 7 60 41 HOH HOH B . H 3 HOH 8 61 42 HOH HOH B . H 3 HOH 9 62 43 HOH HOH B . H 3 HOH 10 63 46 HOH HOH B . H 3 HOH 11 64 47 HOH HOH B . H 3 HOH 12 65 48 HOH HOH B . H 3 HOH 13 66 50 HOH HOH B . H 3 HOH 14 67 52 HOH HOH B . H 3 HOH 15 68 54 HOH HOH B . H 3 HOH 16 69 58 HOH HOH B . H 3 HOH 17 70 82 HOH HOH B . H 3 HOH 18 71 83 HOH HOH B . H 3 HOH 19 72 84 HOH HOH B . H 3 HOH 20 73 86 HOH HOH B . I 3 HOH 1 54 20 HOH HOH C . I 3 HOH 2 55 22 HOH HOH C . I 3 HOH 3 56 25 HOH HOH C . I 3 HOH 4 57 27 HOH HOH C . I 3 HOH 5 58 31 HOH HOH C . I 3 HOH 6 59 32 HOH HOH C . I 3 HOH 7 60 35 HOH HOH C . I 3 HOH 8 61 38 HOH HOH C . I 3 HOH 9 62 44 HOH HOH C . I 3 HOH 10 63 45 HOH HOH C . I 3 HOH 11 64 49 HOH HOH C . I 3 HOH 12 65 51 HOH HOH C . I 3 HOH 13 66 53 HOH HOH C . I 3 HOH 14 67 55 HOH HOH C . I 3 HOH 15 68 56 HOH HOH C . I 3 HOH 16 69 57 HOH HOH C . I 3 HOH 17 70 59 HOH HOH C . I 3 HOH 18 71 60 HOH HOH C . I 3 HOH 19 72 61 HOH HOH C . I 3 HOH 20 73 62 HOH HOH C . I 3 HOH 21 74 63 HOH HOH C . I 3 HOH 22 75 64 HOH HOH C . I 3 HOH 23 76 66 HOH HOH C . I 3 HOH 24 77 68 HOH HOH C . I 3 HOH 25 78 69 HOH HOH C . I 3 HOH 26 79 70 HOH HOH C . I 3 HOH 27 80 71 HOH HOH C . I 3 HOH 28 81 72 HOH HOH C . I 3 HOH 29 82 73 HOH HOH C . I 3 HOH 30 83 74 HOH HOH C . I 3 HOH 31 84 75 HOH HOH C . I 3 HOH 32 85 77 HOH HOH C . I 3 HOH 33 86 78 HOH HOH C . I 3 HOH 34 87 81 HOH HOH C . I 3 HOH 35 88 85 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,G 2 1 B,E,H 3 1 C,F,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 6 ? A CYS 6 ? 1_555 FE ? D FE . ? A FE 53 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 110.4 ? 2 SG ? A CYS 6 ? A CYS 6 ? 1_555 FE ? D FE . ? A FE 53 ? 1_555 SG ? A CYS 39 ? A CYS 39 ? 1_555 109.6 ? 3 SG ? A CYS 9 ? A CYS 9 ? 1_555 FE ? D FE . ? A FE 53 ? 1_555 SG ? A CYS 39 ? A CYS 39 ? 1_555 105.3 ? 4 SG ? A CYS 6 ? A CYS 6 ? 1_555 FE ? D FE . ? A FE 53 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 106.2 ? 5 SG ? A CYS 9 ? A CYS 9 ? 1_555 FE ? D FE . ? A FE 53 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 114.3 ? 6 SG ? A CYS 39 ? A CYS 39 ? 1_555 FE ? D FE . ? A FE 53 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 111.0 ? 7 SG ? B CYS 6 ? B CYS 6 ? 1_555 FE ? E FE . ? B FE 53 ? 1_555 SG ? B CYS 9 ? B CYS 9 ? 1_555 110.6 ? 8 SG ? B CYS 6 ? B CYS 6 ? 1_555 FE ? E FE . ? B FE 53 ? 1_555 SG ? B CYS 39 ? B CYS 39 ? 1_555 109.1 ? 9 SG ? B CYS 9 ? B CYS 9 ? 1_555 FE ? E FE . ? B FE 53 ? 1_555 SG ? B CYS 39 ? B CYS 39 ? 1_555 105.8 ? 10 SG ? B CYS 6 ? B CYS 6 ? 1_555 FE ? E FE . ? B FE 53 ? 1_555 SG ? B CYS 42 ? B CYS 42 ? 1_555 106.3 ? 11 SG ? B CYS 9 ? B CYS 9 ? 1_555 FE ? E FE . ? B FE 53 ? 1_555 SG ? B CYS 42 ? B CYS 42 ? 1_555 113.9 ? 12 SG ? B CYS 39 ? B CYS 39 ? 1_555 FE ? E FE . ? B FE 53 ? 1_555 SG ? B CYS 42 ? B CYS 42 ? 1_555 111.1 ? 13 SG ? C CYS 6 ? C CYS 6 ? 1_555 FE ? F FE . ? C FE 53 ? 1_555 SG ? C CYS 9 ? C CYS 9 ? 1_555 112.7 ? 14 SG ? C CYS 6 ? C CYS 6 ? 1_555 FE ? F FE . ? C FE 53 ? 1_555 SG ? C CYS 39 ? C CYS 39 ? 1_555 109.5 ? 15 SG ? C CYS 9 ? C CYS 9 ? 1_555 FE ? F FE . ? C FE 53 ? 1_555 SG ? C CYS 39 ? C CYS 39 ? 1_555 106.4 ? 16 SG ? C CYS 6 ? C CYS 6 ? 1_555 FE ? F FE . ? C FE 53 ? 1_555 SG ? C CYS 42 ? C CYS 42 ? 1_555 106.0 ? 17 SG ? C CYS 9 ? C CYS 9 ? 1_555 FE ? F FE . ? C FE 53 ? 1_555 SG ? C CYS 42 ? C CYS 42 ? 1_555 112.3 ? 18 SG ? C CYS 39 ? C CYS 39 ? 1_555 FE ? F FE . ? C FE 53 ? 1_555 SG ? C CYS 42 ? C CYS 42 ? 1_555 109.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-05-18 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 WEIS 'data reduction' . ? 3 FSCALE 'data scaling' . ? 4 X-PLOR phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 65 ? ? O A HOH 77 ? ? 2.15 2 1 O C HOH 85 ? ? O C HOH 88 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 19 ? ? -158.21 74.75 2 1 PRO B 34 ? ? -38.52 136.46 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1RDV _pdbx_initial_refinement_model.details 'PDB ENTRY 1RDV' #