HEADER HYDROLASE 16-OCT-07 2RKG TITLE HIV-1 PR RESISTANT MUTANT + LPV COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE RETROPEPSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HIV-1 PROTEASE; COMPND 5 EC: 3.4.23.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 STRAIN: TYPE B; SOURCE 6 GENE: GAG-POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET LIKE, T7 PROMOTOR DRIVEN KEYWDS RESISTENCE, INSERTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.REZACOVA,J.BRYNDA,M.KOZISEK,K.SASKOVA,J.KONVALINKA REVDAT 5 30-AUG-23 2RKG 1 REMARK REVDAT 4 20-OCT-21 2RKG 1 REMARK SEQADV HETSYN REVDAT 3 13-JUL-11 2RKG 1 VERSN REVDAT 2 24-FEB-09 2RKG 1 VERSN REVDAT 1 05-AUG-08 2RKG 0 JRNL AUTH M.KOZISEK,K.G.SASKOVA,P.REZACOVA,J.BRYNDA, JRNL AUTH 2 N.M.VAN MAARSEVEEN,D.DE JONG,C.A.BOUCHER,R.M.KAGAN, JRNL AUTH 3 M.NIJHUIS,J.KONVALINKA JRNL TITL NINETY-NINE IS NOT ENOUGH: MOLECULAR CHARACTERIZATION OF JRNL TITL 2 INHIBITOR-RESISTANT HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 JRNL TITL 3 PROTEASE MUTANTS WITH INSERTIONS IN THE FLAP REGION JRNL REF J.VIROL. V. 82 5869 2008 JRNL REFN ISSN 0022-538X JRNL PMID 18400858 JRNL DOI 10.1128/JVI.02325-07 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 15673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1212 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.732 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1724 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2347 ; 1.385 ; 2.027 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 5.533 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;39.692 ;24.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 283 ;12.737 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.014 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1266 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 833 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1177 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.245 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1042 ; 0.896 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1652 ; 1.352 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 773 ; 1.714 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 691 ; 2.651 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 100 2 REMARK 3 1 B 1 B 100 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 398 ; 0.02 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 381 ; 0.34 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 398 ; 0.17 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 381 ; 0.68 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 501 B 501 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 46 ; 0.01 ; 0.05 REMARK 3 TIGHT THERMAL 2 A (A**2): 46 ; 0.04 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 9 REMARK 3 RESIDUE RANGE : A 87 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9170 29.3410 2.1040 REMARK 3 T TENSOR REMARK 3 T11: -0.1529 T22: -0.0879 REMARK 3 T33: -0.1768 T12: -0.0718 REMARK 3 T13: 0.0044 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.8754 L22: 2.0227 REMARK 3 L33: 8.4312 L12: -0.7516 REMARK 3 L13: 0.6451 L23: -1.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: -0.0180 S13: 0.1535 REMARK 3 S21: 0.0145 S22: 0.0921 S23: -0.1298 REMARK 3 S31: -0.5691 S32: -0.1770 S33: -0.0363 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 9 REMARK 3 RESIDUE RANGE : B 89 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8890 25.9080 -2.1720 REMARK 3 T TENSOR REMARK 3 T11: -0.1797 T22: -0.0797 REMARK 3 T33: -0.1809 T12: -0.0494 REMARK 3 T13: -0.0058 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.1160 L22: 2.7799 REMARK 3 L33: 10.6813 L12: -0.1762 REMARK 3 L13: 0.2454 L23: 1.4034 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: -0.0752 S13: -0.0026 REMARK 3 S21: -0.1218 S22: 0.0144 S23: 0.1864 REMARK 3 S31: -0.4087 S32: -0.4675 S33: -0.0257 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 32 REMARK 3 RESIDUE RANGE : A 64 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1400 25.7520 9.4640 REMARK 3 T TENSOR REMARK 3 T11: -0.1687 T22: -0.1224 REMARK 3 T33: -0.1619 T12: -0.0371 REMARK 3 T13: -0.0255 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 3.0822 L22: 3.0214 REMARK 3 L33: 3.4654 L12: 2.2680 REMARK 3 L13: 2.3884 L23: 0.9410 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: 0.0010 S13: -0.1039 REMARK 3 S21: 0.1409 S22: 0.0650 S23: -0.1774 REMARK 3 S31: 0.1530 S32: -0.1048 S33: -0.0635 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 32 REMARK 3 RESIDUE RANGE : B 64 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2350 16.4290 -9.4080 REMARK 3 T TENSOR REMARK 3 T11: -0.1664 T22: -0.1217 REMARK 3 T33: -0.1646 T12: -0.0356 REMARK 3 T13: -0.0299 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 4.7798 L22: 0.9033 REMARK 3 L33: 3.0912 L12: 1.1274 REMARK 3 L13: 1.6842 L23: 1.5727 REMARK 3 S TENSOR REMARK 3 S11: 0.0828 S12: 0.0763 S13: -0.2392 REMARK 3 S21: -0.0505 S22: -0.0455 S23: -0.0258 REMARK 3 S31: 0.0001 S32: 0.1899 S33: -0.0374 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7380 14.5120 13.7150 REMARK 3 T TENSOR REMARK 3 T11: 0.0675 T22: -0.0456 REMARK 3 T33: 0.0335 T12: -0.0175 REMARK 3 T13: -0.1634 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.6728 L22: 9.0723 REMARK 3 L33: 17.4632 L12: 1.4808 REMARK 3 L13: -2.7089 L23: 6.4813 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: -0.0809 S13: -0.5418 REMARK 3 S21: 1.0637 S22: -0.1613 S23: -0.6100 REMARK 3 S31: 1.2731 S32: 0.2551 S33: 0.1044 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6770 8.7230 -13.5120 REMARK 3 T TENSOR REMARK 3 T11: -0.0168 T22: 0.0468 REMARK 3 T33: 0.0344 T12: 0.0301 REMARK 3 T13: -0.0846 T23: -0.1453 REMARK 3 L TENSOR REMARK 3 L11: 8.1372 L22: 2.3727 REMARK 3 L33: 17.3069 L12: -2.5462 REMARK 3 L13: 3.6868 L23: -5.3723 REMARK 3 S TENSOR REMARK 3 S11: 0.3754 S12: 0.8975 S13: -0.8424 REMARK 3 S21: -0.2051 S22: -0.4668 S23: -0.1371 REMARK 3 S31: 0.8693 S32: 0.9537 S33: 0.0914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RKG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000044968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16989 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 34.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1U8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.1M MES PH 5.5, 0.5M REMARK 280 AMMONIUM SULFATE; DROPS: 2UL PROTEIN + 1UL RESERVOIR CPR=8MG/ML, REMARK 280 5-FOLD MOLAR EXCESS OF LPV MICROSEEDING, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.98067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.96133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.97100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.95167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.99033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AB1 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RKF RELATED DB: PDB DBREF 2RKG A 1 100 UNP A0F7J4 A0F7J4_9HIV1 1 99 DBREF 2RKG B 1 100 UNP A0F7J4 A0F7J4_9HIV1 1 99 SEQADV 2RKG VAL A 13 UNP A0F7J4 ILE 13 ENGINEERED MUTATION SEQADV 2RKG ALA A 16 UNP A0F7J4 GLY 16 ENGINEERED MUTATION SEQADV 2RKG MET A 20 UNP A0F7J4 LYS 20 ENGINEERED MUTATION SEQADV 2RKG GLU A 34 UNP A0F7J4 INSERTION SEQADV 2RKG SER A 38 UNP A0F7J4 ASN 37 ENGINEERED MUTATION SEQADV 2RKG VAL A 47 UNP A0F7J4 ILE 46 ENGINEERED MUTATION SEQADV 2RKG MET A 55 UNP A0F7J4 LEU 54 ENGINEERED MUTATION SEQADV 2RKG LEU A 64 UNP A0F7J4 PRO 63 ENGINEERED MUTATION SEQADV 2RKG ILE A 94 UNP A0F7J4 LEU 93 ENGINEERED MUTATION SEQADV 2RKG VAL B 13 UNP A0F7J4 ILE 13 ENGINEERED MUTATION SEQADV 2RKG ALA B 16 UNP A0F7J4 GLY 16 ENGINEERED MUTATION SEQADV 2RKG MET B 20 UNP A0F7J4 LYS 20 ENGINEERED MUTATION SEQADV 2RKG GLU B 34 UNP A0F7J4 INSERTION SEQADV 2RKG SER B 38 UNP A0F7J4 ASN 37 ENGINEERED MUTATION SEQADV 2RKG VAL B 47 UNP A0F7J4 ILE 46 ENGINEERED MUTATION SEQADV 2RKG MET B 55 UNP A0F7J4 LEU 54 ENGINEERED MUTATION SEQADV 2RKG LEU B 64 UNP A0F7J4 PRO 63 ENGINEERED MUTATION SEQADV 2RKG ILE B 94 UNP A0F7J4 LEU 93 ENGINEERED MUTATION SEQRES 1 A 100 PRO GLN ILE THR LEU TRP GLN ARG PRO PHE VAL THR VAL SEQRES 2 A 100 LYS ILE ALA GLY GLN LEU MET GLU ALA LEU LEU ASP THR SEQRES 3 A 100 GLY ALA ASP ASP THR ILE LEU GLU GLU GLU MET SER LEU SEQRES 4 A 100 PRO GLY ARG TRP THR PRO LYS VAL VAL GLY GLY ILE GLY SEQRES 5 A 100 GLY PHE MET LYS VAL ARG GLN TYR ASP GLN ILE LEU VAL SEQRES 6 A 100 GLU ILE CYS GLY HIS LYS VAL ILE GLY THR VAL LEU VAL SEQRES 7 A 100 GLY PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU SEQRES 8 A 100 THR GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 B 100 PRO GLN ILE THR LEU TRP GLN ARG PRO PHE VAL THR VAL SEQRES 2 B 100 LYS ILE ALA GLY GLN LEU MET GLU ALA LEU LEU ASP THR SEQRES 3 B 100 GLY ALA ASP ASP THR ILE LEU GLU GLU GLU MET SER LEU SEQRES 4 B 100 PRO GLY ARG TRP THR PRO LYS VAL VAL GLY GLY ILE GLY SEQRES 5 B 100 GLY PHE MET LYS VAL ARG GLN TYR ASP GLN ILE LEU VAL SEQRES 6 B 100 GLU ILE CYS GLY HIS LYS VAL ILE GLY THR VAL LEU VAL SEQRES 7 B 100 GLY PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU SEQRES 8 B 100 THR GLN ILE GLY CYS THR LEU ASN PHE HET GOL A1002 6 HET AB1 B 501 92 HET GOL B1001 6 HETNAM GOL GLYCEROL HETNAM AB1 N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3- HETNAM 2 AB1 HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO- HETNAM 3 AB1 PYRIMIDIN-1-YL)-BUTYRAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN AB1 ABT-378; LOPINAVIR FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 AB1 C37 H48 N4 O5 FORMUL 6 HOH *145(H2 O) HELIX 1 1 GLY A 87 THR A 92 1 6 HELIX 2 2 GLN A 93 GLY A 95 5 3 HELIX 3 3 GLY B 87 THR B 92 1 6 HELIX 4 4 GLN B 93 GLY B 95 5 3 SHEET 1 A 4 GLN A 2 THR A 4 0 SHEET 2 A 4 THR B 97 ASN B 99 -1 O LEU B 98 N ILE A 3 SHEET 3 A 4 THR A 97 ASN A 99 -1 N THR A 97 O ASN B 99 SHEET 4 A 4 GLN B 2 THR B 4 -1 O ILE B 3 N LEU A 98 SHEET 1 B 8 THR A 44 GLY A 49 0 SHEET 2 B 8 PHE A 54 ILE A 67 -1 O VAL A 57 N LYS A 46 SHEET 3 B 8 HIS A 70 VAL A 78 -1 O VAL A 72 N VAL A 65 SHEET 4 B 8 ILE A 32 LEU A 33 1 N LEU A 33 O LEU A 77 SHEET 5 B 8 ILE A 85 ILE A 86 -1 O ILE A 85 N ILE A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 86 SHEET 7 B 8 PHE A 10 ILE A 15 -1 N VAL A 13 O MET A 20 SHEET 8 B 8 PHE A 54 ILE A 67 -1 O GLU A 66 N LYS A 14 SHEET 1 C 8 THR B 44 GLY B 50 0 SHEET 2 C 8 GLY B 53 ILE B 67 -1 O VAL B 57 N LYS B 46 SHEET 3 C 8 HIS B 70 VAL B 78 -1 O VAL B 72 N VAL B 65 SHEET 4 C 8 ILE B 32 LEU B 33 1 N LEU B 33 O LEU B 77 SHEET 5 C 8 ILE B 85 ILE B 86 -1 O ILE B 85 N ILE B 32 SHEET 6 C 8 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 86 SHEET 7 C 8 PHE B 10 ILE B 15 -1 N VAL B 13 O MET B 20 SHEET 8 C 8 GLY B 53 ILE B 67 -1 O GLU B 66 N LYS B 14 SITE 1 AC1 25 ASP A 25 GLY A 27 ALA A 28 ASP A 29 SITE 2 AC1 25 ASP A 30 GLY A 49 GLY A 50 ILE A 51 SITE 3 AC1 25 PRO A 82 HOH A1005 HOH A1064 ASP B 25 SITE 4 AC1 25 GLY B 27 ALA B 28 ASP B 29 ASP B 30 SITE 5 AC1 25 GLY B 49 GLY B 50 ILE B 51 PRO B 82 SITE 6 AC1 25 HOH B1006 HOH B1010 HOH B1063 HOH B1064 SITE 7 AC1 25 HOH B1077 SITE 1 AC2 4 TRP A 6 ASP B 29 ARG B 88 ASN B 89 SITE 1 AC3 4 ASP A 29 ARG A 88 ASN A 89 TRP B 6 CRYST1 62.010 62.010 83.942 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016126 0.009311 0.000000 0.00000 SCALE2 0.000000 0.018621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011913 0.00000