data_2RS6 # _entry.id 2RS6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RS6 pdb_00002rs6 10.2210/pdb2rs6/pdb RCSB RCSB150220 ? ? BMRB 11456 ? ? WWPDB D_1000150220 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2RS7 PDB . unspecified 1whq PDB . unspecified 11456 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RS6 _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2011-11-29 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagata, T.' 1 'Muto, Y.' 2 'Tsuda, K.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Terada, T.' 6 'Shirouzu, M.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structures of the double-stranded RNA-binding domains from RNA helicase A' _citation.journal_abbrev Proteins _citation.journal_volume 80 _citation.page_first 1699 _citation.page_last 1706 _citation.year 2012 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22454253 _citation.pdbx_database_id_DOI 10.1002/prot.24059 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagata, T.' 1 ? primary 'Tsuda, K.' 2 ? primary 'Kobayashi, N.' 3 ? primary 'Shirouzu, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Guntert, P.' 6 ? primary 'Yokoyama, S.' 7 ? primary 'Muto, Y.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'ATP-dependent RNA helicase A' _entity.formula_weight 10733.122 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.6.4.13 _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP RESIDUES 4-89' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DEAH box protein 9, mHEL-5, Nuclear DNA helicase II, NDH II' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVK SEEVPAVGIVPPPSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVK SEEVPAVGIVPPPSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ILE n 1 9 LYS n 1 10 ASN n 1 11 PHE n 1 12 LEU n 1 13 TYR n 1 14 ALA n 1 15 TRP n 1 16 CYS n 1 17 GLY n 1 18 LYS n 1 19 ARG n 1 20 LYS n 1 21 MET n 1 22 THR n 1 23 PRO n 1 24 ALA n 1 25 TYR n 1 26 GLU n 1 27 ILE n 1 28 ARG n 1 29 ALA n 1 30 VAL n 1 31 GLY n 1 32 ASN n 1 33 LYS n 1 34 ASN n 1 35 ARG n 1 36 GLN n 1 37 LYS n 1 38 PHE n 1 39 MET n 1 40 CYS n 1 41 GLU n 1 42 VAL n 1 43 ARG n 1 44 VAL n 1 45 GLU n 1 46 GLY n 1 47 PHE n 1 48 ASN n 1 49 TYR n 1 50 ALA n 1 51 GLY n 1 52 MET n 1 53 GLY n 1 54 ASN n 1 55 SER n 1 56 THR n 1 57 ASN n 1 58 LYS n 1 59 LYS n 1 60 ASP n 1 61 ALA n 1 62 GLN n 1 63 SER n 1 64 ASN n 1 65 ALA n 1 66 ALA n 1 67 ARG n 1 68 ASP n 1 69 PHE n 1 70 VAL n 1 71 ASN n 1 72 TYR n 1 73 LEU n 1 74 VAL n 1 75 ARG n 1 76 ILE n 1 77 ASN n 1 78 GLU n 1 79 VAL n 1 80 LYS n 1 81 SER n 1 82 GLU n 1 83 GLU n 1 84 VAL n 1 85 PRO n 1 86 ALA n 1 87 VAL n 1 88 GLY n 1 89 ILE n 1 90 VAL n 1 91 PRO n 1 92 PRO n 1 93 PRO n 1 94 SER n 1 95 GLY n 1 96 PRO n 1 97 SER n 1 98 SER n 1 99 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Dhx9, Ddx9' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'cell-free protein synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DHX9_MOUSE _struct_ref.pdbx_db_accession O70133 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKSEEVPAV GIVPPP ; _struct_ref.pdbx_align_begin 4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RS6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O70133 _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 89 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 89 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RS6 GLY A 1 ? UNP O70133 ? ? 'expression tag' -3 1 1 2RS6 SER A 2 ? UNP O70133 ? ? 'expression tag' -2 2 1 2RS6 SER A 3 ? UNP O70133 ? ? 'expression tag' -1 3 1 2RS6 GLY A 4 ? UNP O70133 ? ? 'expression tag' 0 4 1 2RS6 SER A 5 ? UNP O70133 ? ? 'expression tag' 1 5 1 2RS6 SER A 6 ? UNP O70133 ? ? 'expression tag' 2 6 1 2RS6 GLY A 7 ? UNP O70133 ? ? 'expression tag' 3 7 1 2RS6 SER A 94 ? UNP O70133 ? ? 'expression tag' 90 8 1 2RS6 GLY A 95 ? UNP O70133 ? ? 'expression tag' 91 9 1 2RS6 PRO A 96 ? UNP O70133 ? ? 'expression tag' 92 10 1 2RS6 SER A 97 ? UNP O70133 ? ? 'expression tag' 93 11 1 2RS6 SER A 98 ? UNP O70133 ? ? 'expression tag' 94 12 1 2RS6 GLY A 99 ? UNP O70133 ? ? 'expression tag' 95 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-13C NOESY' 1 2 1 '3D 1H-15N NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;1.3 mM [U-100% 13C; U-100% 15N] entity-1, 20 mM sodium phosphate-2, 100 mM sodium chloride-3, 1 mM DTT-4, 0.02 % sodium azide-5, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 700 Bruker AVANCE 2 'Bruker Avance' 600 Bruker AVANCE 3 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2RS6 _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RS6 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RS6 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm' refinement Amber 1 ? 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm' 'structure solution' Amber 2 ? ? refinement CYANA 3 ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ;double-stranded RNA binding domain, dsRBD, DSRM, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, RNA BINDING PROTEIN ; _exptl.entry_id 2RS6 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RS6 _struct.title 'Solution structure of the N-terminal dsRBD from RNA helicase A' _struct.pdbx_model_details 'fewest violations, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RS6 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Protein, double-stranded RNA binding domain, dsRBD, dsrm, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 6 ? LYS A 18 ? SER A 2 LYS A 14 1 ? 13 HELX_P HELX_P2 2 ASN A 57 ? ILE A 76 ? ASN A 53 ILE A 72 1 ? 20 HELX_P HELX_P3 3 LYS A 80 ? VAL A 84 ? LYS A 76 VAL A 80 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 24 ? GLY A 31 ? ALA A 20 GLY A 27 A 2 GLN A 36 ? ARG A 43 ? GLN A 32 ARG A 39 A 3 GLY A 51 ? SER A 55 ? GLY A 47 SER A 51 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 30 ? N VAL A 26 O LYS A 37 ? O LYS A 33 A 2 3 N PHE A 38 ? N PHE A 34 O SER A 55 ? O SER A 51 # _atom_sites.entry_id 2RS6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 -3 GLY GLY A . n A 1 2 SER 2 -2 -2 SER SER A . n A 1 3 SER 3 -1 -1 SER SER A . n A 1 4 GLY 4 0 0 GLY GLY A . n A 1 5 SER 5 1 1 SER SER A . n A 1 6 SER 6 2 2 SER SER A . n A 1 7 GLY 7 3 3 GLY GLY A . n A 1 8 ILE 8 4 4 ILE ILE A . n A 1 9 LYS 9 5 5 LYS LYS A . n A 1 10 ASN 10 6 6 ASN ASN A . n A 1 11 PHE 11 7 7 PHE PHE A . n A 1 12 LEU 12 8 8 LEU LEU A . n A 1 13 TYR 13 9 9 TYR TYR A . n A 1 14 ALA 14 10 10 ALA ALA A . n A 1 15 TRP 15 11 11 TRP TRP A . n A 1 16 CYS 16 12 12 CYS CYS A . n A 1 17 GLY 17 13 13 GLY GLY A . n A 1 18 LYS 18 14 14 LYS LYS A . n A 1 19 ARG 19 15 15 ARG ARG A . n A 1 20 LYS 20 16 16 LYS LYS A . n A 1 21 MET 21 17 17 MET MET A . n A 1 22 THR 22 18 18 THR THR A . n A 1 23 PRO 23 19 19 PRO PRO A . n A 1 24 ALA 24 20 20 ALA ALA A . n A 1 25 TYR 25 21 21 TYR TYR A . n A 1 26 GLU 26 22 22 GLU GLU A . n A 1 27 ILE 27 23 23 ILE ILE A . n A 1 28 ARG 28 24 24 ARG ARG A . n A 1 29 ALA 29 25 25 ALA ALA A . n A 1 30 VAL 30 26 26 VAL VAL A . n A 1 31 GLY 31 27 27 GLY GLY A . n A 1 32 ASN 32 28 28 ASN ASN A . n A 1 33 LYS 33 29 29 LYS LYS A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 ARG 35 31 31 ARG ARG A . n A 1 36 GLN 36 32 32 GLN GLN A . n A 1 37 LYS 37 33 33 LYS LYS A . n A 1 38 PHE 38 34 34 PHE PHE A . n A 1 39 MET 39 35 35 MET MET A . n A 1 40 CYS 40 36 36 CYS CYS A . n A 1 41 GLU 41 37 37 GLU GLU A . n A 1 42 VAL 42 38 38 VAL VAL A . n A 1 43 ARG 43 39 39 ARG ARG A . n A 1 44 VAL 44 40 40 VAL VAL A . n A 1 45 GLU 45 41 41 GLU GLU A . n A 1 46 GLY 46 42 42 GLY GLY A . n A 1 47 PHE 47 43 43 PHE PHE A . n A 1 48 ASN 48 44 44 ASN ASN A . n A 1 49 TYR 49 45 45 TYR TYR A . n A 1 50 ALA 50 46 46 ALA ALA A . n A 1 51 GLY 51 47 47 GLY GLY A . n A 1 52 MET 52 48 48 MET MET A . n A 1 53 GLY 53 49 49 GLY GLY A . n A 1 54 ASN 54 50 50 ASN ASN A . n A 1 55 SER 55 51 51 SER SER A . n A 1 56 THR 56 52 52 THR THR A . n A 1 57 ASN 57 53 53 ASN ASN A . n A 1 58 LYS 58 54 54 LYS LYS A . n A 1 59 LYS 59 55 55 LYS LYS A . n A 1 60 ASP 60 56 56 ASP ASP A . n A 1 61 ALA 61 57 57 ALA ALA A . n A 1 62 GLN 62 58 58 GLN GLN A . n A 1 63 SER 63 59 59 SER SER A . n A 1 64 ASN 64 60 60 ASN ASN A . n A 1 65 ALA 65 61 61 ALA ALA A . n A 1 66 ALA 66 62 62 ALA ALA A . n A 1 67 ARG 67 63 63 ARG ARG A . n A 1 68 ASP 68 64 64 ASP ASP A . n A 1 69 PHE 69 65 65 PHE PHE A . n A 1 70 VAL 70 66 66 VAL VAL A . n A 1 71 ASN 71 67 67 ASN ASN A . n A 1 72 TYR 72 68 68 TYR TYR A . n A 1 73 LEU 73 69 69 LEU LEU A . n A 1 74 VAL 74 70 70 VAL VAL A . n A 1 75 ARG 75 71 71 ARG ARG A . n A 1 76 ILE 76 72 72 ILE ILE A . n A 1 77 ASN 77 73 73 ASN ASN A . n A 1 78 GLU 78 74 74 GLU GLU A . n A 1 79 VAL 79 75 75 VAL VAL A . n A 1 80 LYS 80 76 76 LYS LYS A . n A 1 81 SER 81 77 77 SER SER A . n A 1 82 GLU 82 78 78 GLU GLU A . n A 1 83 GLU 83 79 79 GLU GLU A . n A 1 84 VAL 84 80 80 VAL VAL A . n A 1 85 PRO 85 81 81 PRO PRO A . n A 1 86 ALA 86 82 82 ALA ALA A . n A 1 87 VAL 87 83 83 VAL VAL A . n A 1 88 GLY 88 84 84 GLY GLY A . n A 1 89 ILE 89 85 85 ILE ILE A . n A 1 90 VAL 90 86 86 VAL VAL A . n A 1 91 PRO 91 87 87 PRO PRO A . n A 1 92 PRO 92 88 88 PRO PRO A . n A 1 93 PRO 93 89 89 PRO PRO A . n A 1 94 SER 94 90 90 SER SER A . n A 1 95 GLY 95 91 91 GLY GLY A . n A 1 96 PRO 96 92 92 PRO PRO A . n A 1 97 SER 97 93 93 SER SER A . n A 1 98 SER 98 94 94 SER SER A . n A 1 99 GLY 99 95 95 GLY GLY A . n # _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center RSGI _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-14 2 'Structure model' 1 1 2013-10-16 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id entity-1 1.3 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium phosphate-2' 20 ? mM ? 1 'sodium chloride-3' 100 ? mM ? 1 DTT-4 1 ? mM ? 1 'sodium azide-5' 0.02 ? % ? 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.82 120.30 3.52 0.50 N 2 2 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.43 120.30 3.13 0.50 N 3 2 NE A ARG 39 ? ? CZ A ARG 39 ? ? NH1 A ARG 39 ? ? 123.34 120.30 3.04 0.50 N 4 2 NE A ARG 71 ? ? CZ A ARG 71 ? ? NH1 A ARG 71 ? ? 123.57 120.30 3.27 0.50 N 5 3 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.87 120.30 3.57 0.50 N 6 4 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.87 120.30 3.57 0.50 N 7 4 NE A ARG 24 ? ? CZ A ARG 24 ? ? NH1 A ARG 24 ? ? 123.71 120.30 3.41 0.50 N 8 5 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.38 120.30 3.08 0.50 N 9 6 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.87 120.30 3.57 0.50 N 10 6 NE A ARG 39 ? ? CZ A ARG 39 ? ? NH1 A ARG 39 ? ? 123.35 120.30 3.05 0.50 N 11 7 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.84 120.30 3.54 0.50 N 12 8 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.72 120.30 3.42 0.50 N 13 8 NE A ARG 24 ? ? CZ A ARG 24 ? ? NH1 A ARG 24 ? ? 123.55 120.30 3.25 0.50 N 14 9 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.84 120.30 3.54 0.50 N 15 9 NE A ARG 39 ? ? CZ A ARG 39 ? ? NH1 A ARG 39 ? ? 123.47 120.30 3.17 0.50 N 16 10 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.52 120.30 3.22 0.50 N 17 10 NE A ARG 24 ? ? CZ A ARG 24 ? ? NH1 A ARG 24 ? ? 123.89 120.30 3.59 0.50 N 18 12 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.82 120.30 3.52 0.50 N 19 12 NE A ARG 39 ? ? CZ A ARG 39 ? ? NH1 A ARG 39 ? ? 123.34 120.30 3.04 0.50 N 20 13 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.81 120.30 3.51 0.50 N 21 13 NE A ARG 24 ? ? CZ A ARG 24 ? ? NH1 A ARG 24 ? ? 123.71 120.30 3.41 0.50 N 22 13 NE A ARG 39 ? ? CZ A ARG 39 ? ? NH1 A ARG 39 ? ? 123.52 120.30 3.22 0.50 N 23 14 NE A ARG 24 ? ? CZ A ARG 24 ? ? NH1 A ARG 24 ? ? 123.65 120.30 3.35 0.50 N 24 14 NE A ARG 39 ? ? CZ A ARG 39 ? ? NH1 A ARG 39 ? ? 123.33 120.30 3.03 0.50 N 25 15 NE A ARG 39 ? ? CZ A ARG 39 ? ? NH1 A ARG 39 ? ? 123.48 120.30 3.18 0.50 N 26 16 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.81 120.30 3.51 0.50 N 27 16 NE A ARG 24 ? ? CZ A ARG 24 ? ? NH1 A ARG 24 ? ? 123.82 120.30 3.52 0.50 N 28 17 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.80 120.30 3.50 0.50 N 29 19 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.76 120.30 3.46 0.50 N 30 20 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 123.82 120.30 3.52 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -142.80 19.42 2 1 ARG A 31 ? ? -117.21 67.75 3 1 SER A 51 ? ? -171.95 -171.04 4 1 SER A 93 ? ? -143.61 16.06 5 2 SER A 1 ? ? -162.87 -167.55 6 2 ARG A 31 ? ? -117.61 75.64 7 2 SER A 93 ? ? -151.65 14.95 8 2 SER A 94 ? ? 67.29 -7.49 9 3 SER A -2 ? ? -161.77 -78.08 10 3 VAL A 86 ? ? 66.56 81.29 11 5 SER A -1 ? ? 72.03 -42.62 12 5 SER A 93 ? ? -162.74 -40.63 13 6 SER A 1 ? ? -160.93 5.64 14 7 SER A 2 ? ? -159.30 29.88 15 8 ARG A 31 ? ? -153.52 71.08 16 8 SER A 93 ? ? -166.84 -53.38 17 11 SER A -1 ? ? 68.48 -10.61 18 11 SER A 93 ? ? 66.85 -9.78 19 13 SER A 1 ? ? -168.16 -161.52 20 14 ARG A 31 ? ? -153.62 72.84 21 15 SER A 51 ? ? -169.59 -169.97 22 16 SER A 1 ? ? 71.92 -4.73 23 16 SER A 2 ? ? -164.98 117.96 24 17 SER A 1 ? ? -72.89 -73.91 25 17 SER A 93 ? ? -163.11 -39.33 26 18 VAL A 86 ? ? 81.40 132.30 27 19 SER A 2 ? ? -150.96 47.54 28 20 SER A 51 ? ? -170.06 -175.86 #