HEADER TRANSPORT PROTEIN 27-FEB-14 2RU9 TITLE STRUCTURE OF THE YAM DOMAIN OF E. COLI TRANSPORTER YAJR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YAM DOMAIN, UNP RESIDUES 389-454; COMPND 5 SYNONYM: INNER MEMBRANE TRANSPORTER YAJR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YAJR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS FERREDOXIN LIKE, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.LIU,W.FENG REVDAT 4 14-JUN-23 2RU9 1 REMARK REVDAT 3 24-AUG-22 2RU9 1 JRNL REVDAT 2 11-DEC-19 2RU9 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV REVDAT 1 02-JUL-14 2RU9 0 JRNL AUTH D.JIANG,Y.ZHAO,J.FAN,X.LIU,Y.WU,W.FENG,X.C.ZHANG JRNL TITL ATOMIC RESOLUTION STRUCTURE OF THE E. COLI YAJR TRANSPORTER JRNL TITL 2 YAM DOMAIN. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 450 929 2014 JRNL REFN ESSN 1090-2104 JRNL PMID 24952155 JRNL DOI 10.1016/J.BBRC.2014.06.053 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3, ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000150274. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 90 % H2O-1, 10 % D2O-2, 50 MM REMARK 210 SODIUM PHOSPHATE-3, 1 MM EDTA-4, REMARK 210 1 MM DTT-5, 150 MM SODIUM REMARK 210 CHLORIDE-6, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 2D 1H-13C REMARK 210 HSQC; 3D C(CO)NH; 3D HBHA(CO)NH; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.3, SPARKY, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 HIS A 75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 5 24.48 -72.49 REMARK 500 1 SER A 52 1.32 -69.74 REMARK 500 2 LYS A 2 -177.67 67.33 REMARK 500 2 PRO A 5 -179.25 -66.64 REMARK 500 2 GLU A 36 146.30 -170.29 REMARK 500 3 LYS A 2 131.00 69.21 REMARK 500 3 ASN A 21 -166.97 -167.37 REMARK 500 4 LYS A 2 76.11 57.21 REMARK 500 4 PRO A 5 43.32 -71.86 REMARK 500 4 LYS A 35 -35.86 -134.64 REMARK 500 6 LYS A 2 28.01 -141.64 REMARK 500 6 GLU A 36 146.71 -170.21 REMARK 500 8 ASN A 21 -166.85 -164.61 REMARK 500 9 PRO A 5 23.94 -77.15 REMARK 500 9 SER A 52 0.80 -67.29 REMARK 500 10 PRO A 5 29.74 -78.28 REMARK 500 11 PRO A 5 25.07 -71.95 REMARK 500 12 PRO A 5 25.71 -76.16 REMARK 500 13 LYS A 2 67.65 61.21 REMARK 500 13 PRO A 5 26.57 -71.82 REMARK 500 13 SER A 52 0.79 -68.24 REMARK 500 14 PRO A 5 36.42 -76.76 REMARK 500 15 PRO A 5 33.97 -76.04 REMARK 500 15 SER A 52 1.34 -68.21 REMARK 500 16 PRO A 5 37.73 -75.22 REMARK 500 16 SER A 52 2.00 -69.05 REMARK 500 17 GLU A 36 141.02 -170.25 REMARK 500 18 PRO A 5 35.87 -74.07 REMARK 500 20 PRO A 5 1.55 -63.49 REMARK 500 20 GLU A 36 140.58 -170.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11555 RELATED DB: BMRB DBREF1 2RU9 A 2 67 UNP A0A066R7V5_ECOLX DBREF2 2RU9 A A0A066R7V5 389 454 SEQADV 2RU9 MET A 0 UNP A0A066R7V EXPRESSION TAG SEQADV 2RU9 GLY A 1 UNP A0A066R7V EXPRESSION TAG SEQADV 2RU9 LEU A 68 UNP A0A066R7V EXPRESSION TAG SEQADV 2RU9 GLU A 69 UNP A0A066R7V EXPRESSION TAG SEQADV 2RU9 HIS A 70 UNP A0A066R7V EXPRESSION TAG SEQADV 2RU9 HIS A 71 UNP A0A066R7V EXPRESSION TAG SEQADV 2RU9 HIS A 72 UNP A0A066R7V EXPRESSION TAG SEQADV 2RU9 HIS A 73 UNP A0A066R7V EXPRESSION TAG SEQADV 2RU9 HIS A 74 UNP A0A066R7V EXPRESSION TAG SEQADV 2RU9 HIS A 75 UNP A0A066R7V EXPRESSION TAG SEQRES 1 A 76 MET GLY LYS GLU PRO PRO TYR VAL SER SER LEU ARG ILE SEQRES 2 A 76 GLU ILE PRO ALA ASP ILE ALA ALA ASN GLU ALA LEU LYS SEQRES 3 A 76 VAL ARG LEU LEU GLU THR GLU GLY VAL LYS GLU VAL LEU SEQRES 4 A 76 ILE ALA GLU GLU GLU HIS SER ALA TYR VAL LYS ILE ASP SEQRES 5 A 76 SER LYS VAL THR ASN ARG PHE GLU VAL GLU GLN ALA ILE SEQRES 6 A 76 ARG GLN ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 21 LEU A 29 1 9 HELIX 2 2 ASN A 56 GLU A 69 1 14 SHEET 1 A 3 VAL A 7 GLU A 13 0 SHEET 2 A 3 SER A 45 ASP A 51 -1 O ALA A 46 N ILE A 12 SHEET 3 A 3 VAL A 34 ALA A 40 -1 N LEU A 38 O TYR A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1