data_2RUF # _entry.id 2RUF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RUF pdb_00002ruf 10.2210/pdb2ruf/pdb RCSB RCSB150279 ? ? BMRB 11562 ? ? WWPDB D_1000150279 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2kp1 PDB . unspecified 2kp2 PDB . unspecified 11562 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RUF _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2014-03-31 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Inagaki, K.' 1 'Satoh, T.' 2 'Kato, K.' 3 # _citation.id primary _citation.title ;Redox-coupled structural changes of the catalytic a' domain of protein disulfide isomerase. ; _citation.journal_abbrev 'Febs Lett.' _citation.journal_volume 589 _citation.page_first 2690 _citation.page_last 2694 _citation.year 2015 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26272828 _citation.pdbx_database_id_DOI 10.1016/j.febslet.2015.07.041 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Inagaki, K.' 1 ? primary 'Satoh, T.' 2 ? primary 'Yagi-Utsumi, M.' 3 ? primary 'Le Gulluche, A.C.' 4 ? primary 'Anzai, T.' 5 ? primary 'Uekusa, Y.' 6 ? primary 'Kamiya, Y.' 7 ? primary 'Kato, K.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein disulfide-isomerase' _entity.formula_weight 13123.905 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 5.3.4.1 _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 354-469' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name PDI # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQ GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQ GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLU n 1 7 GLY n 1 8 PRO n 1 9 VAL n 1 10 THR n 1 11 VAL n 1 12 VAL n 1 13 VAL n 1 14 ALA n 1 15 LYS n 1 16 ASN n 1 17 TYR n 1 18 ASN n 1 19 GLU n 1 20 ILE n 1 21 VAL n 1 22 LEU n 1 23 ASP n 1 24 ASP n 1 25 THR n 1 26 LYS n 1 27 ASP n 1 28 VAL n 1 29 LEU n 1 30 ILE n 1 31 GLU n 1 32 PHE n 1 33 TYR n 1 34 ALA n 1 35 PRO n 1 36 TRP n 1 37 CYS n 1 38 GLY n 1 39 HIS n 1 40 CYS n 1 41 LYS n 1 42 ALA n 1 43 LEU n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 TYR n 1 48 GLU n 1 49 GLU n 1 50 LEU n 1 51 GLY n 1 52 ALA n 1 53 LEU n 1 54 TYR n 1 55 ALA n 1 56 LYS n 1 57 SER n 1 58 GLU n 1 59 PHE n 1 60 LYS n 1 61 ASP n 1 62 ARG n 1 63 VAL n 1 64 VAL n 1 65 ILE n 1 66 ALA n 1 67 LYS n 1 68 VAL n 1 69 ASP n 1 70 ALA n 1 71 THR n 1 72 ALA n 1 73 ASN n 1 74 ASP n 1 75 VAL n 1 76 PRO n 1 77 ASP n 1 78 GLU n 1 79 ILE n 1 80 GLN n 1 81 GLY n 1 82 PHE n 1 83 PRO n 1 84 THR n 1 85 ILE n 1 86 LYS n 1 87 LEU n 1 88 TYR n 1 89 PRO n 1 90 ALA n 1 91 GLY n 1 92 ALA n 1 93 LYS n 1 94 GLY n 1 95 GLN n 1 96 PRO n 1 97 VAL n 1 98 THR n 1 99 TYR n 1 100 SER n 1 101 GLY n 1 102 SER n 1 103 ARG n 1 104 THR n 1 105 VAL n 1 106 GLU n 1 107 ASP n 1 108 LEU n 1 109 ILE n 1 110 LYS n 1 111 PHE n 1 112 ILE n 1 113 ALA n 1 114 GLU n 1 115 ASN n 1 116 GLY n 1 117 LYS n 1 118 TYR n 1 119 LYS n 1 120 ALA n 1 121 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Soft-rot fungus' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Humicola insolens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 34413 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant DE3 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pGEX6P-1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDI_HUMIN _struct_ref.pdbx_db_accession P55059 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTI KLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA ; _struct_ref.pdbx_align_begin 354 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RUF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 121 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P55059 _struct_ref_seq.db_align_beg 354 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 469 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RUF GLY A 1 ? UNP P55059 ? ? 'expression tag' 1 1 1 2RUF PRO A 2 ? UNP P55059 ? ? 'expression tag' 2 2 1 2RUF LEU A 3 ? UNP P55059 ? ? 'expression tag' 3 3 1 2RUF GLY A 4 ? UNP P55059 ? ? 'expression tag' 4 4 1 2RUF SER A 5 ? UNP P55059 ? ? 'expression tag' 5 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D 1H-15N NOESY' 1 3 2 '2D 1H-13C HSQC aliphatic' 1 4 2 '2D 1H-13C HSQC aromatic' 1 5 2 '3D 1H-13C NOESY aliphatic' 1 6 2 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.16 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.1 mM [U-15N] PDI-1, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.1 mM [U-13C; U-15N] PDI-2, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 920 JEOL ECA 2 'JEOL ECA' # _pdbx_nmr_refine.entry_id 2RUF _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RUF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RUF _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1 1.3 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 2 3.0 Goddard 'chemical shift assignment' Sparky 3 3.1 'Bruker Biospin' processing XwinNMR 4 2.6 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RUF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RUF _struct.title ;Solution structure of the a' domain of thermophilic fungal protein disulfide (reduced form, 303K) ; _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RUF _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'THIOREDOXIN FOLD, ISOMERASE, DISULFIDE BOND, ENDOPLASMIC RETICULUM, REDOX-ACTIVE CENTER' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 16 ? ASP A 23 ? ASN A 16 ASP A 23 1 ? 8 HELX_P HELX_P2 2 CYS A 37 ? SER A 57 ? CYS A 37 SER A 57 1 ? 21 HELX_P HELX_P3 3 THR A 104 ? GLY A 116 ? THR A 104 GLY A 116 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 10 ? VAL A 11 ? THR A 10 VAL A 11 A 2 VAL A 63 ? ASP A 69 ? VAL A 63 ASP A 69 A 3 ASP A 27 ? TYR A 33 ? ASP A 27 TYR A 33 A 4 THR A 84 ? TYR A 88 ? THR A 84 TYR A 88 A 5 VAL A 97 ? THR A 98 ? VAL A 97 THR A 98 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 10 ? N THR A 10 O ILE A 65 ? O ILE A 65 A 2 3 O VAL A 64 ? O VAL A 64 N ASP A 27 ? N ASP A 27 A 3 4 N ILE A 30 ? N ILE A 30 O LYS A 86 ? O LYS A 86 A 4 5 N LEU A 87 ? N LEU A 87 O VAL A 97 ? O VAL A 97 # _atom_sites.entry_id 2RUF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 HIS 39 39 39 HIS HIS A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 ALA 121 121 121 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-20 2 'Structure model' 1 1 2015-08-05 3 'Structure model' 1 2 2015-08-26 4 'Structure model' 1 3 2022-08-24 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer 5 4 'Structure model' struct_ref_seq_dif 6 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_volume' 2 4 'Structure model' '_citation.page_first' 3 4 'Structure model' '_citation.page_last' 4 4 'Structure model' '_citation.title' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_nmr_software.name' 8 4 'Structure model' '_pdbx_nmr_spectrometer.model' 9 4 'Structure model' '_struct_ref_seq_dif.details' 10 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id PDI-1 0.1 ? mM '[U-15N]' 1 PDI-2 0.1 ? mM '[U-13C; U-15N]' 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A PHE 82 ? ? H A THR 84 ? ? 1.59 2 1 O A PHE 82 ? ? OG1 A THR 84 ? ? 2.01 3 1 O A PHE 82 ? ? N A THR 84 ? ? 2.01 4 2 O A PHE 82 ? ? H A THR 84 ? ? 1.57 5 2 O A PHE 82 ? ? OG1 A THR 84 ? ? 1.98 6 2 O A PHE 82 ? ? N A THR 84 ? ? 2.02 7 3 O A PHE 82 ? ? H A THR 84 ? ? 1.55 8 3 O A PHE 82 ? ? OG1 A THR 84 ? ? 1.98 9 3 O A PHE 82 ? ? N A THR 84 ? ? 2.01 10 4 O A PHE 82 ? ? H A THR 84 ? ? 1.59 11 4 O A PHE 82 ? ? N A THR 84 ? ? 2.01 12 4 O A PHE 82 ? ? OG1 A THR 84 ? ? 2.03 13 5 O A PHE 82 ? ? H A THR 84 ? ? 1.56 14 5 O A PHE 82 ? ? OG1 A THR 84 ? ? 1.99 15 5 O A PHE 82 ? ? N A THR 84 ? ? 2.02 16 6 O A PHE 82 ? ? H A THR 84 ? ? 1.58 17 6 O A PHE 82 ? ? OG1 A THR 84 ? ? 2.00 18 6 O A PHE 82 ? ? N A THR 84 ? ? 2.00 19 7 O A PHE 82 ? ? H A THR 84 ? ? 1.59 20 7 O A PHE 82 ? ? N A THR 84 ? ? 2.01 21 7 O A PHE 82 ? ? OG1 A THR 84 ? ? 2.01 22 8 O A PHE 82 ? ? H A THR 84 ? ? 1.58 23 8 O A PHE 82 ? ? N A THR 84 ? ? 2.01 24 8 O A PHE 82 ? ? OG1 A THR 84 ? ? 2.02 25 9 O A PHE 82 ? ? H A THR 84 ? ? 1.57 26 9 O A PHE 82 ? ? N A THR 84 ? ? 2.01 27 9 O A PHE 82 ? ? OG1 A THR 84 ? ? 2.02 28 10 O A PHE 82 ? ? H A THR 84 ? ? 1.58 29 10 O A PHE 82 ? ? OG1 A THR 84 ? ? 1.96 30 10 O A PHE 82 ? ? N A THR 84 ? ? 2.01 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 6 ? ? 67.42 131.78 2 1 ILE A 20 ? ? -74.02 -78.30 3 1 ASP A 23 ? ? -45.52 94.12 4 1 ARG A 62 ? ? -143.91 -31.01 5 1 ALA A 72 ? ? -162.60 110.67 6 1 ASN A 73 ? ? 176.51 -174.77 7 1 ASP A 74 ? ? -54.16 -79.70 8 1 PHE A 82 ? ? -167.83 -60.35 9 1 PRO A 83 ? ? -41.30 72.61 10 1 GLN A 95 ? ? -152.40 51.23 11 1 ALA A 120 ? ? -63.60 85.23 12 2 LEU A 3 ? ? -169.55 -63.01 13 2 ILE A 20 ? ? -74.29 -77.84 14 2 ASP A 23 ? ? -45.59 93.18 15 2 ALA A 72 ? ? -160.43 110.04 16 2 ASN A 73 ? ? 175.52 -175.25 17 2 ASP A 74 ? ? -50.10 -77.65 18 2 PHE A 82 ? ? -169.84 -60.16 19 2 PRO A 83 ? ? -43.18 73.33 20 2 ALA A 92 ? ? -110.20 74.97 21 2 GLN A 95 ? ? -155.15 50.73 22 2 ALA A 120 ? ? -67.39 73.22 23 3 PRO A 2 ? ? -69.44 -171.89 24 3 GLU A 6 ? ? -79.27 -77.52 25 3 ILE A 20 ? ? -74.06 -79.11 26 3 ASP A 23 ? ? -45.48 92.96 27 3 GLU A 58 ? ? -97.33 -60.03 28 3 ARG A 62 ? ? -135.85 -30.24 29 3 ALA A 72 ? ? -172.89 116.70 30 3 ASN A 73 ? ? 169.94 -174.83 31 3 ASP A 74 ? ? -51.33 -75.41 32 3 ASP A 77 ? ? -58.79 173.48 33 3 PHE A 82 ? ? -168.30 -60.26 34 3 PRO A 83 ? ? -45.09 73.55 35 3 ALA A 92 ? ? -103.87 72.57 36 3 LYS A 93 ? ? -69.89 71.04 37 3 GLN A 95 ? ? -141.92 52.18 38 3 SER A 102 ? ? -59.48 102.71 39 3 ALA A 120 ? ? -59.48 83.99 40 4 SER A 5 ? ? -59.97 -75.86 41 4 GLU A 6 ? ? 61.30 154.81 42 4 ILE A 20 ? ? -73.82 -79.66 43 4 ASP A 23 ? ? -45.56 93.84 44 4 ARG A 62 ? ? -145.64 -35.46 45 4 ASN A 73 ? ? 175.94 -174.86 46 4 ASP A 74 ? ? -49.59 -78.24 47 4 PHE A 82 ? ? -167.79 -60.44 48 4 PRO A 83 ? ? -41.29 72.62 49 4 GLN A 95 ? ? -154.17 52.23 50 4 THR A 104 ? ? -177.38 145.18 51 4 ALA A 120 ? ? -68.98 68.19 52 5 PRO A 2 ? ? -58.35 -71.19 53 5 LEU A 3 ? ? 60.31 165.88 54 5 GLU A 6 ? ? 49.13 -170.22 55 5 ILE A 20 ? ? -73.96 -77.77 56 5 ASP A 23 ? ? -45.51 94.22 57 5 PHE A 59 ? ? -98.69 38.98 58 5 ALA A 72 ? ? -166.02 106.82 59 5 ASN A 73 ? ? 174.11 -175.75 60 5 ASP A 74 ? ? -50.35 -77.70 61 5 PHE A 82 ? ? -169.12 -60.03 62 5 PRO A 83 ? ? -43.84 73.34 63 5 GLN A 95 ? ? -147.45 55.57 64 5 ALA A 120 ? ? -67.84 72.60 65 6 LEU A 3 ? ? 61.34 156.21 66 6 GLU A 6 ? ? -88.63 -72.18 67 6 ILE A 20 ? ? -78.18 -75.17 68 6 ASP A 23 ? ? -46.37 88.62 69 6 ARG A 62 ? ? -145.17 -28.98 70 6 ALA A 72 ? ? -169.87 107.59 71 6 ASN A 73 ? ? 174.15 -176.11 72 6 ASP A 74 ? ? -51.66 -81.64 73 6 ASP A 77 ? ? -56.34 175.67 74 6 PHE A 82 ? ? -169.70 -60.51 75 6 PRO A 83 ? ? -41.80 72.61 76 6 GLN A 95 ? ? -151.22 51.83 77 6 SER A 102 ? ? -59.35 109.99 78 6 ALA A 120 ? ? -64.29 78.06 79 7 ILE A 20 ? ? -73.30 -77.83 80 7 ASP A 23 ? ? -45.41 94.04 81 7 ALA A 72 ? ? -179.27 56.70 82 7 ASN A 73 ? ? 170.64 -178.03 83 7 PHE A 82 ? ? -167.67 -60.54 84 7 PRO A 83 ? ? -41.02 72.58 85 7 LYS A 93 ? ? -90.13 50.02 86 7 GLN A 95 ? ? -146.35 52.31 87 7 ALA A 120 ? ? -65.60 77.23 88 8 LEU A 3 ? ? 60.35 174.29 89 8 ILE A 20 ? ? -72.96 -78.99 90 8 ASP A 23 ? ? -45.35 94.25 91 8 ALA A 72 ? ? -179.14 56.06 92 8 ASN A 73 ? ? 170.76 -177.96 93 8 PHE A 82 ? ? -168.46 -59.97 94 8 PRO A 83 ? ? -42.04 72.91 95 8 GLN A 95 ? ? -155.20 53.25 96 8 ALA A 120 ? ? -64.39 79.66 97 9 GLU A 6 ? ? -108.50 42.14 98 9 ILE A 20 ? ? -75.06 -74.94 99 9 ASP A 23 ? ? -45.68 89.48 100 9 ARG A 62 ? ? -150.75 -35.33 101 9 ALA A 72 ? ? -179.36 55.81 102 9 ASN A 73 ? ? 170.15 -177.74 103 9 PHE A 82 ? ? -169.31 -59.83 104 9 PRO A 83 ? ? -42.94 73.03 105 9 ALA A 92 ? ? -104.84 78.57 106 9 GLN A 95 ? ? -147.38 54.30 107 9 ALA A 120 ? ? -66.33 73.37 108 10 LEU A 3 ? ? -177.30 110.03 109 10 ILE A 20 ? ? -74.39 -79.74 110 10 ASP A 23 ? ? -45.50 91.89 111 10 PHE A 59 ? ? -98.35 38.96 112 10 ARG A 62 ? ? -143.53 -28.79 113 10 ALA A 72 ? ? -177.93 48.77 114 10 ASN A 73 ? ? 170.74 -178.45 115 10 PHE A 82 ? ? -167.80 -60.41 116 10 PRO A 83 ? ? -41.98 73.06 117 10 ALA A 92 ? ? -105.21 74.68 118 10 GLN A 95 ? ? -155.21 50.97 119 10 ALA A 120 ? ? -65.76 78.17 #