data_2TMV # _entry.id 2TMV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2TMV pdb_00002tmv 10.2210/pdb2tmv/pdb WWPDB D_1000178687 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1989-01-09 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 4 'Structure model' Other 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 4 'Structure model' struct_conf 3 4 'Structure model' struct_conf_type 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_struct_conn_angle 8 5 'Structure model' pdbx_struct_oper_list 9 5 'Structure model' struct_conn 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.process_site' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.value' 19 5 'Structure model' '_pdbx_struct_oper_list.name' 20 5 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 21 5 'Structure model' '_pdbx_struct_oper_list.type' 22 5 'Structure model' '_struct_conn.pdbx_dist_value' 23 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2TMV _pdbx_database_status.recvd_initial_deposition_date 1988-09-15 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stubbs, G.' 1 'Pattanayek, R.' 2 'Namba, K.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Visualization of protein-nucleic acid interactions in a virus. Refined structure of intact tobacco mosaic virus at 2.9 A resolution by X-ray fiber diffraction. ; J.Mol.Biol. 208 307 325 1989 JMOBAK UK 0022-2836 0070 ? 2769760 '10.1016/0022-2836(89)90391-4' 1 'Structure of Tobacco Mosaic Virus at 3.6 Angstroms Resolution. Implications for Assembly' Science 231 1401 ? 1986 SCIEAS US 0036-8075 0038 ? ? ? 2 'Application of Restrained Least-Squares Refinement to Fiber Diffraction from Macromolecular Assemblies' Biophys.J. 49 58 ? 1986 BIOJAU US 0006-3495 0030 ? ? ? 3 'Solving the Phase Problem in Fiber Diffraction. Application to Tobacco Mosaic Virus at 3.6 Angstroms Resolution' 'Acta Crystallogr.,Sect.A' 41 252 ? 1985 ACACEQ DK 0108-7673 0621 ? ? ? 4 'Structure of the RNA in Tobacco Mosaic Virus' J.Mol.Biol. 152 387 ? 1981 JMOBAK UK 0022-2836 0070 ? ? ? 5 'Structure of RNA and RNA Binding Site in Tobacco Mosaic Virus from 4-Angstroms Map Calculated from X-Ray Fibre Diagrams' Nature 267 216 ? 1977 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Namba, K.' 1 ? primary 'Pattanayek, R.' 2 ? primary 'Stubbs, G.' 3 ? 1 'Namba, K.' 4 ? 1 'Stubbs, G.' 5 ? 2 'Stubbs, G.' 6 ? 2 'Namba, K.' 7 ? 2 'Makowski, L.' 8 ? 3 'Namba, K.' 9 ? 3 'Stubbs, G.' 10 ? 4 'Stubbs, G.' 11 ? 4 'Stauffacher, C.' 12 ? 5 'Stubbs, G.' 13 ? 5 'Warren, S.' 14 ? 5 'Holmes, K.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(P*GP*AP*A)-3') ; 958.660 1 ? ? ? ? 2 polymer man 'TMV COAT PROTEIN' 17505.426 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 water nat water 18.015 74 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAA GAA R ? 2 'polypeptide(L)' no no ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; P ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 2 1 SER n 2 2 TYR n 2 3 SER n 2 4 ILE n 2 5 THR n 2 6 THR n 2 7 PRO n 2 8 SER n 2 9 GLN n 2 10 PHE n 2 11 VAL n 2 12 PHE n 2 13 LEU n 2 14 SER n 2 15 SER n 2 16 ALA n 2 17 TRP n 2 18 ALA n 2 19 ASP n 2 20 PRO n 2 21 ILE n 2 22 GLU n 2 23 LEU n 2 24 ILE n 2 25 ASN n 2 26 LEU n 2 27 CYS n 2 28 THR n 2 29 ASN n 2 30 ALA n 2 31 LEU n 2 32 GLY n 2 33 ASN n 2 34 GLN n 2 35 PHE n 2 36 GLN n 2 37 THR n 2 38 GLN n 2 39 GLN n 2 40 ALA n 2 41 ARG n 2 42 THR n 2 43 VAL n 2 44 VAL n 2 45 GLN n 2 46 ARG n 2 47 GLN n 2 48 PHE n 2 49 SER n 2 50 GLU n 2 51 VAL n 2 52 TRP n 2 53 LYS n 2 54 PRO n 2 55 SER n 2 56 PRO n 2 57 GLN n 2 58 VAL n 2 59 THR n 2 60 VAL n 2 61 ARG n 2 62 PHE n 2 63 PRO n 2 64 ASP n 2 65 SER n 2 66 ASP n 2 67 PHE n 2 68 LYS n 2 69 VAL n 2 70 TYR n 2 71 ARG n 2 72 TYR n 2 73 ASN n 2 74 ALA n 2 75 VAL n 2 76 LEU n 2 77 ASP n 2 78 PRO n 2 79 LEU n 2 80 VAL n 2 81 THR n 2 82 ALA n 2 83 LEU n 2 84 LEU n 2 85 GLY n 2 86 ALA n 2 87 PHE n 2 88 ASP n 2 89 THR n 2 90 ARG n 2 91 ASN n 2 92 ARG n 2 93 ILE n 2 94 ILE n 2 95 GLU n 2 96 VAL n 2 97 GLU n 2 98 ASN n 2 99 GLN n 2 100 ALA n 2 101 ASN n 2 102 PRO n 2 103 THR n 2 104 THR n 2 105 ALA n 2 106 GLU n 2 107 THR n 2 108 LEU n 2 109 ASP n 2 110 ALA n 2 111 THR n 2 112 ARG n 2 113 ARG n 2 114 VAL n 2 115 ASP n 2 116 ASP n 2 117 ALA n 2 118 THR n 2 119 VAL n 2 120 ALA n 2 121 ILE n 2 122 ARG n 2 123 SER n 2 124 ALA n 2 125 ILE n 2 126 ASN n 2 127 ASN n 2 128 LEU n 2 129 ILE n 2 130 VAL n 2 131 GLU n 2 132 LEU n 2 133 ILE n 2 134 ARG n 2 135 GLY n 2 136 THR n 2 137 GLY n 2 138 SER n 2 139 TYR n 2 140 ASN n 2 141 ARG n 2 142 SER n 2 143 SER n 2 144 PHE n 2 145 GLU n 2 146 SER n 2 147 SER n 2 148 SER n 2 149 GLY n 2 150 LEU n 2 151 VAL n 2 152 TRP n 2 153 THR n 2 154 SER n 2 155 GLY n 2 156 PRO n 2 157 ALA n 2 158 THR n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain vulgare _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Tobacco mosaic virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12243 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G R . n A 1 2 A 2 2 2 A A R . n A 1 3 A 3 3 3 A A R . n B 2 1 SER 1 1 1 SER SER P . n B 2 2 TYR 2 2 2 TYR TYR P . n B 2 3 SER 3 3 3 SER SER P . n B 2 4 ILE 4 4 4 ILE ILE P . n B 2 5 THR 5 5 5 THR THR P . n B 2 6 THR 6 6 6 THR THR P . n B 2 7 PRO 7 7 7 PRO PRO P . n B 2 8 SER 8 8 8 SER SER P . n B 2 9 GLN 9 9 9 GLN GLN P . n B 2 10 PHE 10 10 10 PHE PHE P . n B 2 11 VAL 11 11 11 VAL VAL P . n B 2 12 PHE 12 12 12 PHE PHE P . n B 2 13 LEU 13 13 13 LEU LEU P . n B 2 14 SER 14 14 14 SER SER P . n B 2 15 SER 15 15 15 SER SER P . n B 2 16 ALA 16 16 16 ALA ALA P . n B 2 17 TRP 17 17 17 TRP TRP P . n B 2 18 ALA 18 18 18 ALA ALA P . n B 2 19 ASP 19 19 19 ASP ASP P . n B 2 20 PRO 20 20 20 PRO PRO P . n B 2 21 ILE 21 21 21 ILE ILE P . n B 2 22 GLU 22 22 22 GLU GLU P . n B 2 23 LEU 23 23 23 LEU LEU P . n B 2 24 ILE 24 24 24 ILE ILE P . n B 2 25 ASN 25 25 25 ASN ASN P . n B 2 26 LEU 26 26 26 LEU LEU P . n B 2 27 CYS 27 27 27 CYS CYS P . n B 2 28 THR 28 28 28 THR THR P . n B 2 29 ASN 29 29 29 ASN ASN P . n B 2 30 ALA 30 30 30 ALA ALA P . n B 2 31 LEU 31 31 31 LEU LEU P . n B 2 32 GLY 32 32 32 GLY GLY P . n B 2 33 ASN 33 33 33 ASN ASN P . n B 2 34 GLN 34 34 34 GLN GLN P . n B 2 35 PHE 35 35 35 PHE PHE P . n B 2 36 GLN 36 36 36 GLN GLN P . n B 2 37 THR 37 37 37 THR THR P . n B 2 38 GLN 38 38 38 GLN GLN P . n B 2 39 GLN 39 39 39 GLN GLN P . n B 2 40 ALA 40 40 40 ALA ALA P . n B 2 41 ARG 41 41 41 ARG ARG P . n B 2 42 THR 42 42 42 THR THR P . n B 2 43 VAL 43 43 43 VAL VAL P . n B 2 44 VAL 44 44 44 VAL VAL P . n B 2 45 GLN 45 45 45 GLN GLN P . n B 2 46 ARG 46 46 46 ARG ARG P . n B 2 47 GLN 47 47 47 GLN GLN P . n B 2 48 PHE 48 48 48 PHE PHE P . n B 2 49 SER 49 49 49 SER SER P . n B 2 50 GLU 50 50 50 GLU GLU P . n B 2 51 VAL 51 51 51 VAL VAL P . n B 2 52 TRP 52 52 52 TRP TRP P . n B 2 53 LYS 53 53 53 LYS LYS P . n B 2 54 PRO 54 54 54 PRO PRO P . n B 2 55 SER 55 55 55 SER SER P . n B 2 56 PRO 56 56 56 PRO PRO P . n B 2 57 GLN 57 57 57 GLN GLN P . n B 2 58 VAL 58 58 58 VAL VAL P . n B 2 59 THR 59 59 59 THR THR P . n B 2 60 VAL 60 60 60 VAL VAL P . n B 2 61 ARG 61 61 61 ARG ARG P . n B 2 62 PHE 62 62 62 PHE PHE P . n B 2 63 PRO 63 63 63 PRO PRO P . n B 2 64 ASP 64 64 64 ASP ASP P . n B 2 65 SER 65 65 65 SER SER P . n B 2 66 ASP 66 66 66 ASP ASP P . n B 2 67 PHE 67 67 67 PHE PHE P . n B 2 68 LYS 68 68 68 LYS LYS P . n B 2 69 VAL 69 69 69 VAL VAL P . n B 2 70 TYR 70 70 70 TYR TYR P . n B 2 71 ARG 71 71 71 ARG ARG P . n B 2 72 TYR 72 72 72 TYR TYR P . n B 2 73 ASN 73 73 73 ASN ASN P . n B 2 74 ALA 74 74 74 ALA ALA P . n B 2 75 VAL 75 75 75 VAL VAL P . n B 2 76 LEU 76 76 76 LEU LEU P . n B 2 77 ASP 77 77 77 ASP ASP P . n B 2 78 PRO 78 78 78 PRO PRO P . n B 2 79 LEU 79 79 79 LEU LEU P . n B 2 80 VAL 80 80 80 VAL VAL P . n B 2 81 THR 81 81 81 THR THR P . n B 2 82 ALA 82 82 82 ALA ALA P . n B 2 83 LEU 83 83 83 LEU LEU P . n B 2 84 LEU 84 84 84 LEU LEU P . n B 2 85 GLY 85 85 85 GLY GLY P . n B 2 86 ALA 86 86 86 ALA ALA P . n B 2 87 PHE 87 87 87 PHE PHE P . n B 2 88 ASP 88 88 88 ASP ASP P . n B 2 89 THR 89 89 89 THR THR P . n B 2 90 ARG 90 90 90 ARG ARG P . n B 2 91 ASN 91 91 91 ASN ASN P . n B 2 92 ARG 92 92 92 ARG ARG P . n B 2 93 ILE 93 93 93 ILE ILE P . n B 2 94 ILE 94 94 94 ILE ILE P . n B 2 95 GLU 95 95 95 GLU GLU P . n B 2 96 VAL 96 96 96 VAL VAL P . n B 2 97 GLU 97 97 97 GLU GLU P . n B 2 98 ASN 98 98 98 ASN ASN P . n B 2 99 GLN 99 99 99 GLN GLN P . n B 2 100 ALA 100 100 100 ALA ALA P . n B 2 101 ASN 101 101 101 ASN ASN P . n B 2 102 PRO 102 102 102 PRO PRO P . n B 2 103 THR 103 103 103 THR THR P . n B 2 104 THR 104 104 104 THR THR P . n B 2 105 ALA 105 105 105 ALA ALA P . n B 2 106 GLU 106 106 106 GLU GLU P . n B 2 107 THR 107 107 107 THR THR P . n B 2 108 LEU 108 108 108 LEU LEU P . n B 2 109 ASP 109 109 109 ASP ASP P . n B 2 110 ALA 110 110 110 ALA ALA P . n B 2 111 THR 111 111 111 THR THR P . n B 2 112 ARG 112 112 112 ARG ARG P . n B 2 113 ARG 113 113 113 ARG ARG P . n B 2 114 VAL 114 114 114 VAL VAL P . n B 2 115 ASP 115 115 115 ASP ASP P . n B 2 116 ASP 116 116 116 ASP ASP P . n B 2 117 ALA 117 117 117 ALA ALA P . n B 2 118 THR 118 118 118 THR THR P . n B 2 119 VAL 119 119 119 VAL VAL P . n B 2 120 ALA 120 120 120 ALA ALA P . n B 2 121 ILE 121 121 121 ILE ILE P . n B 2 122 ARG 122 122 122 ARG ARG P . n B 2 123 SER 123 123 123 SER SER P . n B 2 124 ALA 124 124 124 ALA ALA P . n B 2 125 ILE 125 125 125 ILE ILE P . n B 2 126 ASN 126 126 126 ASN ASN P . n B 2 127 ASN 127 127 127 ASN ASN P . n B 2 128 LEU 128 128 128 LEU LEU P . n B 2 129 ILE 129 129 129 ILE ILE P . n B 2 130 VAL 130 130 130 VAL VAL P . n B 2 131 GLU 131 131 131 GLU GLU P . n B 2 132 LEU 132 132 132 LEU LEU P . n B 2 133 ILE 133 133 133 ILE ILE P . n B 2 134 ARG 134 134 134 ARG ARG P . n B 2 135 GLY 135 135 135 GLY GLY P . n B 2 136 THR 136 136 136 THR THR P . n B 2 137 GLY 137 137 137 GLY GLY P . n B 2 138 SER 138 138 138 SER SER P . n B 2 139 TYR 139 139 139 TYR TYR P . n B 2 140 ASN 140 140 140 ASN ASN P . n B 2 141 ARG 141 141 141 ARG ARG P . n B 2 142 SER 142 142 142 SER SER P . n B 2 143 SER 143 143 143 SER SER P . n B 2 144 PHE 144 144 144 PHE PHE P . n B 2 145 GLU 145 145 145 GLU GLU P . n B 2 146 SER 146 146 146 SER SER P . n B 2 147 SER 147 147 147 SER SER P . n B 2 148 SER 148 148 148 SER SER P . n B 2 149 GLY 149 149 149 GLY GLY P . n B 2 150 LEU 150 150 150 LEU LEU P . n B 2 151 VAL 151 151 151 VAL VAL P . n B 2 152 TRP 152 152 152 TRP TRP P . n B 2 153 THR 153 153 153 THR THR P . n B 2 154 SER 154 154 154 SER SER P . n B 2 155 GLY 155 155 ? ? ? P . n B 2 156 PRO 156 156 ? ? ? P . n B 2 157 ALA 157 157 ? ? ? P . n B 2 158 THR 158 158 ? ? ? P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 4 1 CA CA R . D 4 HOH 1 8 8 HOH HOH R . D 4 HOH 2 10 10 HOH HOH R . D 4 HOH 3 11 11 HOH HOH R . D 4 HOH 4 12 12 HOH HOH R . D 4 HOH 5 35 35 HOH HOH R . D 4 HOH 6 41 41 HOH HOH R . D 4 HOH 7 42 42 HOH HOH R . D 4 HOH 8 46 46 HOH HOH R . D 4 HOH 9 47 47 HOH HOH R . D 4 HOH 10 61 61 HOH HOH R . D 4 HOH 11 63 63 HOH HOH R . D 4 HOH 12 65 65 HOH HOH R . D 4 HOH 13 66 66 HOH HOH R . D 4 HOH 14 72 72 HOH HOH R . E 4 HOH 1 159 2 HOH HOH P . E 4 HOH 2 160 3 HOH HOH P . E 4 HOH 3 161 4 HOH HOH P . E 4 HOH 4 162 5 HOH HOH P . E 4 HOH 5 163 6 HOH HOH P . E 4 HOH 6 164 7 HOH HOH P . E 4 HOH 7 165 9 HOH HOH P . E 4 HOH 8 166 13 HOH HOH P . E 4 HOH 9 167 14 HOH HOH P . E 4 HOH 10 168 15 HOH HOH P . E 4 HOH 11 169 16 HOH HOH P . E 4 HOH 12 170 17 HOH HOH P . E 4 HOH 13 171 18 HOH HOH P . E 4 HOH 14 172 19 HOH HOH P . E 4 HOH 15 173 20 HOH HOH P . E 4 HOH 16 174 21 HOH HOH P . E 4 HOH 17 175 22 HOH HOH P . E 4 HOH 18 176 23 HOH HOH P . E 4 HOH 19 177 24 HOH HOH P . E 4 HOH 20 178 25 HOH HOH P . E 4 HOH 21 179 26 HOH HOH P . E 4 HOH 22 180 27 HOH HOH P . E 4 HOH 23 181 28 HOH HOH P . E 4 HOH 24 182 29 HOH HOH P . E 4 HOH 25 183 30 HOH HOH P . E 4 HOH 26 184 31 HOH HOH P . E 4 HOH 27 185 32 HOH HOH P . E 4 HOH 28 186 33 HOH HOH P . E 4 HOH 29 187 34 HOH HOH P . E 4 HOH 30 188 36 HOH HOH P . E 4 HOH 31 189 37 HOH HOH P . E 4 HOH 32 190 38 HOH HOH P . E 4 HOH 33 191 39 HOH HOH P . E 4 HOH 34 192 40 HOH HOH P . E 4 HOH 35 193 43 HOH HOH P . E 4 HOH 36 194 44 HOH HOH P . E 4 HOH 37 195 45 HOH HOH P . E 4 HOH 38 196 48 HOH HOH P . E 4 HOH 39 197 49 HOH HOH P . E 4 HOH 40 198 50 HOH HOH P . E 4 HOH 41 199 51 HOH HOH P . E 4 HOH 42 200 52 HOH HOH P . E 4 HOH 43 201 53 HOH HOH P . E 4 HOH 44 202 54 HOH HOH P . E 4 HOH 45 203 55 HOH HOH P . E 4 HOH 46 204 56 HOH HOH P . E 4 HOH 47 205 57 HOH HOH P . E 4 HOH 48 206 58 HOH HOH P . E 4 HOH 49 207 59 HOH HOH P . E 4 HOH 50 208 60 HOH HOH P . E 4 HOH 51 209 62 HOH HOH P . E 4 HOH 52 210 64 HOH HOH P . E 4 HOH 53 211 67 HOH HOH P . E 4 HOH 54 212 68 HOH HOH P . E 4 HOH 55 213 69 HOH HOH P . E 4 HOH 56 214 70 HOH HOH P . E 4 HOH 57 215 71 HOH HOH P . E 4 HOH 58 216 73 HOH HOH P . E 4 HOH 59 217 74 HOH HOH P . E 4 HOH 60 218 75 HOH HOH P . # _software.name PROLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 2TMV _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TMV _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2TMV _exptl.method 'FIBER DIFFRACTION' _exptl.crystals_number ? # _refine.entry_id 2TMV _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low . _refine.ls_d_res_high 2.9 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.096 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE STRUCTURE WAS DETERMINED BY FIBER DIFFRACTION USING MULTI-DIMENSIONAL ISOMORPHOUS REPLACEMENT WITH LAYER-LINE SPLITTING, SOLVENT FLATTENING REFINEMENT AND RESTRAINED LEAST SQUARES COORDINATE REFINEMENT. THE STRUCTURE INCLUDES 154 OF THE 158 AMINO ACIDS AND THREE RNA NUCLEOTIDES MODELLED AS GAA BUT REPRESENTING THE ENTIRE NUCLEIC ACID CONTENT. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'FIBER DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'FIBER DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1212 _refine_hist.pdbx_number_atoms_nucleic_acid 67 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 1354 _refine_hist.d_res_high 2.9 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.011 0.020 ? ? 'FIBER DIFFRACTION' ? p_angle_d 0.046 0.040 ? ? 'FIBER DIFFRACTION' ? p_angle_deg ? ? ? ? 'FIBER DIFFRACTION' ? p_planar_d 0.044 0.050 ? ? 'FIBER DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'FIBER DIFFRACTION' ? p_mcbond_it 0.580 1.000 ? ? 'FIBER DIFFRACTION' ? p_mcangle_it 1.061 1.500 ? ? 'FIBER DIFFRACTION' ? p_scbond_it 0.305 1.000 ? ? 'FIBER DIFFRACTION' ? p_scangle_it 0.728 1.500 ? ? 'FIBER DIFFRACTION' ? p_plane_restr 0.009 0.020 ? ? 'FIBER DIFFRACTION' ? p_chiral_restr 0.135 0.150 ? ? 'FIBER DIFFRACTION' ? p_singtor_nbd 0.229 0.500 ? ? 'FIBER DIFFRACTION' ? p_multtor_nbd 0.406 0.500 ? ? 'FIBER DIFFRACTION' ? p_xhyhbond_nbd 0.288 0.500 ? ? 'FIBER DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'FIBER DIFFRACTION' ? p_planar_tor 1.9 3.0 ? ? 'FIBER DIFFRACTION' ? p_staggered_tor ? ? ? ? 'FIBER DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'FIBER DIFFRACTION' ? p_transverse_tor ? ? ? ? 'FIBER DIFFRACTION' ? p_special_tor ? ? ? ? 'FIBER DIFFRACTION' ? # _database_PDB_matrix.entry_id 2TMV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2TMV _struct.title ;VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2TMV _struct_keywords.pdbx_keywords Virus/RNA _struct_keywords.text 'VIRUS, Helical virus, Virus-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP COAT_TMV 2 P03570 1 ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; ? 2 PDB 2TMV 1 2TMV ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2TMV P 1 ? 158 ? P03570 1 ? 158 ? 1 158 2 2 2TMV R 1 ? 3 ? 2TMV 1 ? 3 ? 1 3 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 98 2 'helical asymmetric unit' ? dimeric 2 3 'helical asymmetric unit, std helical frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-49)' A,B,C,D,E 2 1 A,B,C,D,E 3 H A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? -0.98155916 0.19115863 0.00000000 0.00000 -0.19115863 -0.98155916 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -33.79592 2 'helical symmetry operation' ? ? -0.83808810 0.54553490 0.00000000 0.00000 -0.54553490 -0.83808810 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -32.38776 3 'helical symmetry operation' ? ? -0.57211666 0.82017225 0.00000000 0.00000 -0.82017225 -0.57211666 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -30.97959 4 'helical symmetry operation' ? ? -0.22252093 0.97492791 0.00000000 0.00000 -0.97492791 -0.22252093 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -29.57143 5 'helical symmetry operation' ? ? 0.15959990 0.98718178 0.00000000 0.00000 -0.98718178 0.15959990 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.16327 6 'helical symmetry operation' ? ? 0.51839257 0.85514276 0.00000000 0.00000 -0.85514276 0.51839257 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -26.75510 7 'helical symmetry operation' ? ? 0.80141362 0.59811053 0.00000000 0.00000 -0.59811053 0.80141362 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -25.34694 8 'helical symmetry operation' ? ? 0.96729486 0.25365458 0.00000000 0.00000 -0.25365458 0.96729486 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -23.93878 9 'helical symmetry operation' ? ? 0.99179001 -0.12787716 0.00000000 0.00000 0.12787716 0.99179001 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -22.53061 10 'helical symmetry operation' ? ? 0.87131870 -0.49071755 0.00000000 0.00000 0.49071755 0.87131870 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -21.12245 11 'helical symmetry operation' ? ? 0.62348980 -0.78183148 0.00000000 0.00000 0.78183148 0.62348980 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -19.71429 12 'helical symmetry operation' ? ? 0.28452759 -0.95866785 0.00000000 0.00000 0.95866785 0.28452759 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -18.30612 13 'helical symmetry operation' ? ? -0.09602303 -0.99537911 0.00000000 0.00000 0.99537911 -0.09602303 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -16.89796 14 'helical symmetry operation' ? ? -0.46253829 -0.88659931 0.00000000 0.00000 0.88659931 -0.46253829 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -15.48980 15 'helical symmetry operation' ? ? -0.76144596 -0.64822840 0.00000000 0.00000 0.64822840 -0.76144596 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.08163 16 'helical symmetry operation' ? ? -0.94905575 -0.31510822 0.00000000 0.00000 0.31510822 -0.94905575 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.67347 17 'helical symmetry operation' ? ? -0.99794539 0.06407022 0.00000000 0.00000 -0.06407022 -0.99794539 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -11.26531 18 'helical symmetry operation' ? ? -0.90096887 0.43388374 0.00000000 0.00000 -0.43388374 -0.90096887 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -9.85714 19 'helical symmetry operation' ? ? -0.67230089 0.74027800 0.00000000 0.00000 -0.74027800 -0.67230089 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -8.44898 20 'helical symmetry operation' ? ? -0.34536505 0.93846842 0.00000000 0.00000 -0.93846842 -0.34536505 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -7.04082 21 'helical symmetry operation' ? ? 0.03205158 0.99948622 0.00000000 0.00000 -0.99948622 0.03205158 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -5.63265 22 'helical symmetry operation' ? ? 0.40478334 0.91441262 0.00000000 0.00000 -0.91441262 0.40478334 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.22449 23 'helical symmetry operation' ? ? 0.71834935 0.69568255 0.00000000 0.00000 -0.69568255 0.71834935 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -2.81633 24 'helical symmetry operation' ? ? 0.92691676 0.37526700 0.00000000 0.00000 -0.37526700 0.92691676 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -1.40816 25 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -0.00000 26 'helical symmetry operation' ? ? 0.92691676 -0.37526700 0.00000000 0.00000 0.37526700 0.92691676 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 1.40816 27 'helical symmetry operation' ? ? 0.71834935 -0.69568255 0.00000000 0.00000 0.69568255 0.71834935 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 2.81633 28 'helical symmetry operation' ? ? 0.40478334 -0.91441262 0.00000000 0.00000 0.91441262 0.40478334 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.22449 29 'helical symmetry operation' ? ? 0.03205158 -0.99948622 0.00000000 0.00000 0.99948622 0.03205158 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 5.63265 30 'helical symmetry operation' ? ? -0.34536505 -0.93846842 0.00000000 0.00000 0.93846842 -0.34536505 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 7.04082 31 'helical symmetry operation' ? ? -0.67230089 -0.74027800 0.00000000 0.00000 0.74027800 -0.67230089 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 8.44898 32 'helical symmetry operation' ? ? -0.90096887 -0.43388374 0.00000000 0.00000 0.43388374 -0.90096887 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.85714 33 'helical symmetry operation' ? ? -0.99794539 -0.06407022 0.00000000 0.00000 0.06407022 -0.99794539 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 11.26531 34 'helical symmetry operation' ? ? -0.94905575 0.31510822 0.00000000 0.00000 -0.31510822 -0.94905575 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.67347 35 'helical symmetry operation' ? ? -0.76144596 0.64822840 0.00000000 0.00000 -0.64822840 -0.76144596 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.08163 36 'helical symmetry operation' ? ? -0.46253829 0.88659931 0.00000000 0.00000 -0.88659931 -0.46253829 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 15.48980 37 'helical symmetry operation' ? ? -0.09602303 0.99537911 0.00000000 0.00000 -0.99537911 -0.09602303 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 16.89796 38 'helical symmetry operation' ? ? 0.28452759 0.95866785 0.00000000 0.00000 -0.95866785 0.28452759 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 18.30612 39 'helical symmetry operation' ? ? 0.62348980 0.78183148 0.00000000 0.00000 -0.78183148 0.62348980 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 19.71429 40 'helical symmetry operation' ? ? 0.87131870 0.49071755 0.00000000 0.00000 -0.49071755 0.87131870 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 21.12245 41 'helical symmetry operation' ? ? 0.99179001 0.12787716 0.00000000 0.00000 -0.12787716 0.99179001 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 22.53061 42 'helical symmetry operation' ? ? 0.96729486 -0.25365458 0.00000000 0.00000 0.25365458 0.96729486 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 23.93878 43 'helical symmetry operation' ? ? 0.80141362 -0.59811053 0.00000000 0.00000 0.59811053 0.80141362 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 25.34694 44 'helical symmetry operation' ? ? 0.51839257 -0.85514276 0.00000000 0.00000 0.85514276 0.51839257 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 26.75510 45 'helical symmetry operation' ? ? 0.15959990 -0.98718178 0.00000000 0.00000 0.98718178 0.15959990 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.16327 46 'helical symmetry operation' ? ? -0.22252093 -0.97492791 0.00000000 0.00000 0.97492791 -0.22252093 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 29.57143 47 'helical symmetry operation' ? ? -0.57211666 -0.82017225 0.00000000 0.00000 0.82017225 -0.57211666 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 30.97959 48 'helical symmetry operation' ? ? -0.83808810 -0.54553490 0.00000000 0.00000 0.54553490 -0.83808810 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 32.38776 49 'helical symmetry operation' ? ? -0.98155916 -0.19115863 0.00000000 0.00000 0.19115863 -0.98155916 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 33.79592 # _struct_biol.id 1 _struct_biol.details ;TMV IS A ROD-SHAPED VIRUS 3000 ANGSTROMS LONG AND 180 ANGSTROMS IN DIAMETER, WITH A CENTRAL HOLE OF DIAMETER 40 ANGSTROMS. APPROXIMATELY 2130 IDENTICAL PROTEIN SUBUNITS OF MOLECULAR WEIGHT 17500 FORM A RIGHT-HANDED HELIX OF PITCH 23 ANGSTROMS AND LENGTH 69 ANGTROMS WITH 49 SUBUNITS IN THREE TURNS. A SINGLE STRAND OF RNA FOLLOWS THE BASIC HELIX BETWEEN THE PROTEIN SUBUNITS AT A DISTANCE OF 40 ANGSTROMS. THERE ARE THREE NUCLEOTIDES BOUND TO EACH PROTEIN SUBUNIT. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 N GLN B 9 ? SER B 14 ? GLN P 9 SER P 14 1 ? 6 HELX_P HELX_P2 LS ASP B 19 ? ASN B 33 ? ASP P 19 ASN P 33 1 ? 15 HELX_P HELX_P3 RS THR B 37 ? TRP B 52 ? THR P 37 TRP P 52 1 ? 16 HELX_P HELX_P4 RR ASN B 73 ? ALA B 86 ? ASN P 73 ALA P 86 1 ? 14 HELX_P HELX_P5 LR THR B 111 ? GLY B 135 ? THR P 111 GLY P 135 1 ? 25 HELX_P HELX_P6 C ASN B 140 ? SER B 146 ? ASN P 140 SER P 146 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 "O2'" ? ? ? 1_555 C CA . CA ? ? R G 1 R CA 4 1_555 ? ? ? ? ? ? ? 3.102 ? ? metalc2 metalc ? ? A A 2 OP1 ? ? ? 1_555 C CA . CA ? ? R A 2 R CA 4 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc3 metalc ? ? A A 2 OP2 ? ? ? 1_555 C CA . CA ? ? R A 2 R CA 4 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc4 metalc ? ? A A 3 "O4'" ? ? ? 1_555 C CA . CA ? ? R A 3 R CA 4 1_555 ? ? ? ? ? ? ? 3.078 ? ? metalc5 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? R CA 4 R HOH 11 1_555 ? ? ? ? ? ? ? 2.846 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? R CA 4 R HOH 35 1_555 ? ? ? ? ? ? ? 2.919 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 B ASP 116 OD1 ? ? R CA 4 P ASP 116 1_555 ? ? ? ? ? ? ? 3.304 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 B ASP 116 OD2 ? ? R CA 4 P ASP 116 1_555 ? ? ? ? ? ? ? 2.287 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? A G 1 ? R G 1 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OP1 ? A A 2 ? R A 2 ? 1_555 65.2 ? 2 "O2'" ? A G 1 ? R G 1 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OP2 ? A A 2 ? R A 2 ? 1_555 79.1 ? 3 OP1 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OP2 ? A A 2 ? R A 2 ? 1_555 66.5 ? 4 "O2'" ? A G 1 ? R G 1 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 "O4'" ? A A 3 ? R A 3 ? 1_555 158.4 ? 5 OP1 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 "O4'" ? A A 3 ? R A 3 ? 1_555 111.3 ? 6 OP2 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 "O4'" ? A A 3 ? R A 3 ? 1_555 120.1 ? 7 "O2'" ? A G 1 ? R G 1 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 O ? D HOH . ? R HOH 11 ? 1_555 77.2 ? 8 OP1 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 O ? D HOH . ? R HOH 11 ? 1_555 116.1 ? 9 OP2 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 O ? D HOH . ? R HOH 11 ? 1_555 56.6 ? 10 "O4'" ? A A 3 ? R A 3 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 O ? D HOH . ? R HOH 11 ? 1_555 120.5 ? 11 "O2'" ? A G 1 ? R G 1 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 O ? D HOH . ? R HOH 35 ? 1_555 101.1 ? 12 OP1 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 O ? D HOH . ? R HOH 35 ? 1_555 51.1 ? 13 OP2 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 O ? D HOH . ? R HOH 35 ? 1_555 107.8 ? 14 "O4'" ? A A 3 ? R A 3 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 O ? D HOH . ? R HOH 35 ? 1_555 65.2 ? 15 O ? D HOH . ? R HOH 11 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 O ? D HOH . ? R HOH 35 ? 1_555 164.4 ? 16 "O2'" ? A G 1 ? R G 1 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD1 ? B ASP 116 ? P ASP 116 ? 1_555 50.8 ? 17 OP1 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD1 ? B ASP 116 ? P ASP 116 ? 1_555 70.9 ? 18 OP2 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD1 ? B ASP 116 ? P ASP 116 ? 1_555 124.3 ? 19 "O4'" ? A A 3 ? R A 3 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD1 ? B ASP 116 ? P ASP 116 ? 1_555 107.6 ? 20 O ? D HOH . ? R HOH 11 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD1 ? B ASP 116 ? P ASP 116 ? 1_555 120.2 ? 21 O ? D HOH . ? R HOH 35 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD1 ? B ASP 116 ? P ASP 116 ? 1_555 66.9 ? 22 "O2'" ? A G 1 ? R G 1 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD2 ? B ASP 116 ? P ASP 116 ? 1_555 89.2 ? 23 OP1 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD2 ? B ASP 116 ? P ASP 116 ? 1_555 99.0 ? 24 OP2 ? A A 2 ? R A 2 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD2 ? B ASP 116 ? P ASP 116 ? 1_555 164.2 ? 25 "O4'" ? A A 3 ? R A 3 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD2 ? B ASP 116 ? P ASP 116 ? 1_555 69.9 ? 26 O ? D HOH . ? R HOH 11 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD2 ? B ASP 116 ? P ASP 116 ? 1_555 131.3 ? 27 O ? D HOH . ? R HOH 35 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD2 ? B ASP 116 ? P ASP 116 ? 1_555 63.7 ? 28 OD1 ? B ASP 116 ? P ASP 116 ? 1_555 CA ? C CA . ? R CA 4 ? 1_555 OD2 ? B ASP 116 ? P ASP 116 ? 1_555 40.9 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP B 17 ? ALA B 18 ? TRP P 17 ALA P 18 A 2 LYS B 68 ? TYR B 70 ? LYS P 68 TYR P 70 A 3 SER B 138 ? TYR B 139 ? SER P 138 TYR P 139 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA B 18 ? N ALA P 18 O VAL B 69 ? O VAL P 69 A 2 3 O LYS B 68 ? O LYS P 68 N TYR B 139 ? N TYR P 139 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id R _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 4 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE CA R 4' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP B 116 ? ASP P 116 . ? 1_555 ? 2 AC1 6 G A 1 ? G R 1 . ? 1_555 ? 3 AC1 6 A A 2 ? A R 2 . ? 1_555 ? 4 AC1 6 A A 3 ? A R 3 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH R 11 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH R 35 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 R G 1 ? ? C6 R G 1 ? ? N1 R G 1 ? ? 114.50 111.50 3.00 0.50 N 2 1 "C3'" R G 1 ? ? "O3'" R G 1 ? ? P R A 2 ? ? 135.77 119.70 16.07 1.20 Y 3 1 P R A 2 ? ? "O5'" R A 2 ? ? "C5'" R A 2 ? ? 109.20 120.90 -11.70 1.60 N 4 1 "O4'" R A 2 ? ? "C1'" R A 2 ? ? N9 R A 2 ? ? 113.23 108.50 4.73 0.70 N 5 1 N1 R A 2 ? ? C2 R A 2 ? ? N3 R A 2 ? ? 125.64 129.30 -3.66 0.50 N 6 1 "C3'" R A 2 ? ? "O3'" R A 2 ? ? P R A 3 ? ? 134.04 119.70 14.34 1.20 Y 7 1 N1 R A 3 ? ? C2 R A 3 ? ? N3 R A 3 ? ? 126.25 129.30 -3.05 0.50 N 8 1 CB P ASP 19 ? ? CG P ASP 19 ? ? OD1 P ASP 19 ? ? 125.03 118.30 6.73 0.90 N 9 1 CA P CYS 27 ? ? CB P CYS 27 ? ? SG P CYS 27 ? ? 122.19 114.20 7.99 1.10 N 10 1 CB P GLN 36 ? ? CA P GLN 36 ? ? C P GLN 36 ? ? 124.52 110.40 14.12 2.00 N 11 1 NE P ARG 41 ? ? CZ P ARG 41 ? ? NH1 P ARG 41 ? ? 124.84 120.30 4.54 0.50 N 12 1 NE P ARG 41 ? ? CZ P ARG 41 ? ? NH2 P ARG 41 ? ? 116.96 120.30 -3.34 0.50 N 13 1 N P THR 42 ? ? CA P THR 42 ? ? CB P THR 42 ? ? 122.27 110.30 11.97 1.90 N 14 1 NE P ARG 46 ? ? CZ P ARG 46 ? ? NH1 P ARG 46 ? ? 130.29 120.30 9.99 0.50 N 15 1 NE P ARG 46 ? ? CZ P ARG 46 ? ? NH2 P ARG 46 ? ? 115.40 120.30 -4.90 0.50 N 16 1 N P GLN 47 ? ? CA P GLN 47 ? ? CB P GLN 47 ? ? 122.63 110.60 12.03 1.80 N 17 1 CB P ASP 64 ? ? CG P ASP 64 ? ? OD1 P ASP 64 ? ? 125.93 118.30 7.63 0.90 N 18 1 CB P ASP 66 ? ? CG P ASP 66 ? ? OD1 P ASP 66 ? ? 128.41 118.30 10.11 0.90 N 19 1 CB P PHE 67 ? ? CA P PHE 67 ? ? C P PHE 67 ? ? 122.98 110.40 12.58 2.00 N 20 1 CA P PHE 67 ? ? CB P PHE 67 ? ? CG P PHE 67 ? ? 132.06 113.90 18.16 2.40 N 21 1 NE P ARG 71 ? ? CZ P ARG 71 ? ? NH1 P ARG 71 ? ? 125.58 120.30 5.28 0.50 N 22 1 NE P ARG 90 ? ? CZ P ARG 90 ? ? NH2 P ARG 90 ? ? 123.75 120.30 3.45 0.50 N 23 1 N P ASN 91 ? ? CA P ASN 91 ? ? CB P ASN 91 ? ? 124.16 110.60 13.56 1.80 N 24 1 NE P ARG 92 ? ? CZ P ARG 92 ? ? NH1 P ARG 92 ? ? 123.51 120.30 3.21 0.50 N 25 1 NE P ARG 113 ? ? CZ P ARG 113 ? ? NH1 P ARG 113 ? ? 124.63 120.30 4.33 0.50 N 26 1 CD P ARG 134 ? ? NE P ARG 134 ? ? CZ P ARG 134 ? ? 112.55 123.60 -11.05 1.40 N 27 1 NE P ARG 134 ? ? CZ P ARG 134 ? ? NH1 P ARG 134 ? ? 127.32 120.30 7.02 0.50 N 28 1 NE P ARG 134 ? ? CZ P ARG 134 ? ? NH2 P ARG 134 ? ? 112.67 120.30 -7.63 0.50 N 29 1 N P SER 138 ? ? CA P SER 138 ? ? C P SER 138 ? ? 92.76 111.00 -18.24 2.70 N 30 1 CD P ARG 141 ? ? NE P ARG 141 ? ? CZ P ARG 141 ? ? 114.60 123.60 -9.00 1.40 N 31 1 CA P TRP 152 ? ? CB P TRP 152 ? ? CG P TRP 152 ? ? 131.31 113.70 17.61 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER P 8 ? ? -72.90 46.29 2 1 SER P 15 ? ? -93.32 58.53 3 1 LEU P 31 ? ? -54.68 -10.00 4 1 ASN P 33 ? ? -165.02 -161.86 5 1 GLN P 39 ? ? -69.92 -70.51 6 1 SER P 49 ? ? -71.57 -72.97 7 1 SER P 55 ? ? -120.27 -72.40 8 1 SER P 65 ? ? -77.60 20.80 9 1 ALA P 74 ? ? -38.99 -22.35 10 1 ASP P 77 ? ? -32.75 -77.85 11 1 ALA P 82 ? ? -37.27 -34.29 12 1 ARG P 90 ? ? -152.30 -53.47 13 1 ASN P 91 ? ? -169.67 -67.14 14 1 ARG P 92 ? ? 58.36 88.09 15 1 ILE P 93 ? ? -170.84 73.71 16 1 ALA P 100 ? ? -172.95 -164.76 17 1 PRO P 102 ? ? -66.68 -70.36 18 1 THR P 104 ? ? -27.59 -75.87 19 1 GLU P 106 ? ? -65.99 -73.51 20 1 LEU P 108 ? ? -64.50 -77.29 21 1 ASP P 109 ? ? -100.37 -157.68 22 1 ILE P 121 ? ? -53.48 -83.50 23 1 ILE P 125 ? ? -62.25 -72.61 24 1 SER P 143 ? ? -90.44 -71.70 25 1 SER P 147 ? ? -106.77 -60.59 # _pdbx_helical_symmetry.entry_id 2TMV _pdbx_helical_symmetry.number_of_operations 49 _pdbx_helical_symmetry.rotation_per_n_subunits 1080.000000 _pdbx_helical_symmetry.rise_per_n_subunits 69.000000 _pdbx_helical_symmetry.n_subunits_divisor 49 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX THE ENDS OF ALPHA HELICES ARE OFTEN DIFFICULT TO DEFINE AND IN SEVERAL CASES INCLUDE ONE TURN OF 3/10 HELIX. ; # _pdbx_entry_details.entry_id 2TMV _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;WATER MOLECULE 45 OCCUPIES A SITE BELIEVED TO BIND CALCIUM AT HIGHER CALCIUM CONCENTRATIONS. ; _pdbx_entry_details.sequence_details ;GENERATION OF DIFFERENT SUBUNITS IS MOST EASILY DONE IN POLAR COORDINATES. ASSUME THAT THE REFERENCE COORDINATES ARE FROM SUBUNIT NUMBER 0. CONVERT X(0) AND Y(0) TO POLAR COORDINATES R(0) AND PHI(0). PHI IS IN DEGREES. SUBUNIT N IS GENERATED BY R(N) = R(0) PHI(N) = PHI(0) + (3*360/49)*N Z(N) = Z(0) + (69/49)*N THEN CONVERT R(N) AND PHI(N) BACK TO CARTESIAN COORDINATES X(N) AND Y(N). THE LENGTH OF THE BASIC REPEAT UNIT IS 69.0 ANGSTROMS. THE NUMBER OF SUBUNITS IN THE BASIC REPEAT UNIT IS 49. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 P GLY 155 ? B GLY 155 2 1 Y 1 P PRO 156 ? B PRO 156 3 1 Y 1 P ALA 157 ? B ALA 157 4 1 Y 1 P THR 158 ? B THR 158 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CA CA CA N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 G OP3 O N N 126 G P P N N 127 G OP1 O N N 128 G OP2 O N N 129 G "O5'" O N N 130 G "C5'" C N N 131 G "C4'" C N R 132 G "O4'" O N N 133 G "C3'" C N S 134 G "O3'" O N N 135 G "C2'" C N R 136 G "O2'" O N N 137 G "C1'" C N R 138 G N9 N Y N 139 G C8 C Y N 140 G N7 N Y N 141 G C5 C Y N 142 G C6 C N N 143 G O6 O N N 144 G N1 N N N 145 G C2 C N N 146 G N2 N N N 147 G N3 N N N 148 G C4 C Y N 149 G HOP3 H N N 150 G HOP2 H N N 151 G "H5'" H N N 152 G "H5''" H N N 153 G "H4'" H N N 154 G "H3'" H N N 155 G "HO3'" H N N 156 G "H2'" H N N 157 G "HO2'" H N N 158 G "H1'" H N N 159 G H8 H N N 160 G H1 H N N 161 G H21 H N N 162 G H22 H N N 163 GLN N N N N 164 GLN CA C N S 165 GLN C C N N 166 GLN O O N N 167 GLN CB C N N 168 GLN CG C N N 169 GLN CD C N N 170 GLN OE1 O N N 171 GLN NE2 N N N 172 GLN OXT O N N 173 GLN H H N N 174 GLN H2 H N N 175 GLN HA H N N 176 GLN HB2 H N N 177 GLN HB3 H N N 178 GLN HG2 H N N 179 GLN HG3 H N N 180 GLN HE21 H N N 181 GLN HE22 H N N 182 GLN HXT H N N 183 GLU N N N N 184 GLU CA C N S 185 GLU C C N N 186 GLU O O N N 187 GLU CB C N N 188 GLU CG C N N 189 GLU CD C N N 190 GLU OE1 O N N 191 GLU OE2 O N N 192 GLU OXT O N N 193 GLU H H N N 194 GLU H2 H N N 195 GLU HA H N N 196 GLU HB2 H N N 197 GLU HB3 H N N 198 GLU HG2 H N N 199 GLU HG3 H N N 200 GLU HE2 H N N 201 GLU HXT H N N 202 GLY N N N N 203 GLY CA C N N 204 GLY C C N N 205 GLY O O N N 206 GLY OXT O N N 207 GLY H H N N 208 GLY H2 H N N 209 GLY HA2 H N N 210 GLY HA3 H N N 211 GLY HXT H N N 212 HOH O O N N 213 HOH H1 H N N 214 HOH H2 H N N 215 ILE N N N N 216 ILE CA C N S 217 ILE C C N N 218 ILE O O N N 219 ILE CB C N S 220 ILE CG1 C N N 221 ILE CG2 C N N 222 ILE CD1 C N N 223 ILE OXT O N N 224 ILE H H N N 225 ILE H2 H N N 226 ILE HA H N N 227 ILE HB H N N 228 ILE HG12 H N N 229 ILE HG13 H N N 230 ILE HG21 H N N 231 ILE HG22 H N N 232 ILE HG23 H N N 233 ILE HD11 H N N 234 ILE HD12 H N N 235 ILE HD13 H N N 236 ILE HXT H N N 237 LEU N N N N 238 LEU CA C N S 239 LEU C C N N 240 LEU O O N N 241 LEU CB C N N 242 LEU CG C N N 243 LEU CD1 C N N 244 LEU CD2 C N N 245 LEU OXT O N N 246 LEU H H N N 247 LEU H2 H N N 248 LEU HA H N N 249 LEU HB2 H N N 250 LEU HB3 H N N 251 LEU HG H N N 252 LEU HD11 H N N 253 LEU HD12 H N N 254 LEU HD13 H N N 255 LEU HD21 H N N 256 LEU HD22 H N N 257 LEU HD23 H N N 258 LEU HXT H N N 259 LYS N N N N 260 LYS CA C N S 261 LYS C C N N 262 LYS O O N N 263 LYS CB C N N 264 LYS CG C N N 265 LYS CD C N N 266 LYS CE C N N 267 LYS NZ N N N 268 LYS OXT O N N 269 LYS H H N N 270 LYS H2 H N N 271 LYS HA H N N 272 LYS HB2 H N N 273 LYS HB3 H N N 274 LYS HG2 H N N 275 LYS HG3 H N N 276 LYS HD2 H N N 277 LYS HD3 H N N 278 LYS HE2 H N N 279 LYS HE3 H N N 280 LYS HZ1 H N N 281 LYS HZ2 H N N 282 LYS HZ3 H N N 283 LYS HXT H N N 284 PHE N N N N 285 PHE CA C N S 286 PHE C C N N 287 PHE O O N N 288 PHE CB C N N 289 PHE CG C Y N 290 PHE CD1 C Y N 291 PHE CD2 C Y N 292 PHE CE1 C Y N 293 PHE CE2 C Y N 294 PHE CZ C Y N 295 PHE OXT O N N 296 PHE H H N N 297 PHE H2 H N N 298 PHE HA H N N 299 PHE HB2 H N N 300 PHE HB3 H N N 301 PHE HD1 H N N 302 PHE HD2 H N N 303 PHE HE1 H N N 304 PHE HE2 H N N 305 PHE HZ H N N 306 PHE HXT H N N 307 PRO N N N N 308 PRO CA C N S 309 PRO C C N N 310 PRO O O N N 311 PRO CB C N N 312 PRO CG C N N 313 PRO CD C N N 314 PRO OXT O N N 315 PRO H H N N 316 PRO HA H N N 317 PRO HB2 H N N 318 PRO HB3 H N N 319 PRO HG2 H N N 320 PRO HG3 H N N 321 PRO HD2 H N N 322 PRO HD3 H N N 323 PRO HXT H N N 324 SER N N N N 325 SER CA C N S 326 SER C C N N 327 SER O O N N 328 SER CB C N N 329 SER OG O N N 330 SER OXT O N N 331 SER H H N N 332 SER H2 H N N 333 SER HA H N N 334 SER HB2 H N N 335 SER HB3 H N N 336 SER HG H N N 337 SER HXT H N N 338 THR N N N N 339 THR CA C N S 340 THR C C N N 341 THR O O N N 342 THR CB C N R 343 THR OG1 O N N 344 THR CG2 C N N 345 THR OXT O N N 346 THR H H N N 347 THR H2 H N N 348 THR HA H N N 349 THR HB H N N 350 THR HG1 H N N 351 THR HG21 H N N 352 THR HG22 H N N 353 THR HG23 H N N 354 THR HXT H N N 355 TRP N N N N 356 TRP CA C N S 357 TRP C C N N 358 TRP O O N N 359 TRP CB C N N 360 TRP CG C Y N 361 TRP CD1 C Y N 362 TRP CD2 C Y N 363 TRP NE1 N Y N 364 TRP CE2 C Y N 365 TRP CE3 C Y N 366 TRP CZ2 C Y N 367 TRP CZ3 C Y N 368 TRP CH2 C Y N 369 TRP OXT O N N 370 TRP H H N N 371 TRP H2 H N N 372 TRP HA H N N 373 TRP HB2 H N N 374 TRP HB3 H N N 375 TRP HD1 H N N 376 TRP HE1 H N N 377 TRP HE3 H N N 378 TRP HZ2 H N N 379 TRP HZ3 H N N 380 TRP HH2 H N N 381 TRP HXT H N N 382 TYR N N N N 383 TYR CA C N S 384 TYR C C N N 385 TYR O O N N 386 TYR CB C N N 387 TYR CG C Y N 388 TYR CD1 C Y N 389 TYR CD2 C Y N 390 TYR CE1 C Y N 391 TYR CE2 C Y N 392 TYR CZ C Y N 393 TYR OH O N N 394 TYR OXT O N N 395 TYR H H N N 396 TYR H2 H N N 397 TYR HA H N N 398 TYR HB2 H N N 399 TYR HB3 H N N 400 TYR HD1 H N N 401 TYR HD2 H N N 402 TYR HE1 H N N 403 TYR HE2 H N N 404 TYR HH H N N 405 TYR HXT H N N 406 VAL N N N N 407 VAL CA C N S 408 VAL C C N N 409 VAL O O N N 410 VAL CB C N N 411 VAL CG1 C N N 412 VAL CG2 C N N 413 VAL OXT O N N 414 VAL H H N N 415 VAL H2 H N N 416 VAL HA H N N 417 VAL HB H N N 418 VAL HG11 H N N 419 VAL HG12 H N N 420 VAL HG13 H N N 421 VAL HG21 H N N 422 VAL HG22 H N N 423 VAL HG23 H N N 424 VAL HXT H N N 425 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 G OP3 P sing N N 122 G OP3 HOP3 sing N N 123 G P OP1 doub N N 124 G P OP2 sing N N 125 G P "O5'" sing N N 126 G OP2 HOP2 sing N N 127 G "O5'" "C5'" sing N N 128 G "C5'" "C4'" sing N N 129 G "C5'" "H5'" sing N N 130 G "C5'" "H5''" sing N N 131 G "C4'" "O4'" sing N N 132 G "C4'" "C3'" sing N N 133 G "C4'" "H4'" sing N N 134 G "O4'" "C1'" sing N N 135 G "C3'" "O3'" sing N N 136 G "C3'" "C2'" sing N N 137 G "C3'" "H3'" sing N N 138 G "O3'" "HO3'" sing N N 139 G "C2'" "O2'" sing N N 140 G "C2'" "C1'" sing N N 141 G "C2'" "H2'" sing N N 142 G "O2'" "HO2'" sing N N 143 G "C1'" N9 sing N N 144 G "C1'" "H1'" sing N N 145 G N9 C8 sing Y N 146 G N9 C4 sing Y N 147 G C8 N7 doub Y N 148 G C8 H8 sing N N 149 G N7 C5 sing Y N 150 G C5 C6 sing N N 151 G C5 C4 doub Y N 152 G C6 O6 doub N N 153 G C6 N1 sing N N 154 G N1 C2 sing N N 155 G N1 H1 sing N N 156 G C2 N2 sing N N 157 G C2 N3 doub N N 158 G N2 H21 sing N N 159 G N2 H22 sing N N 160 G N3 C4 sing N N 161 GLN N CA sing N N 162 GLN N H sing N N 163 GLN N H2 sing N N 164 GLN CA C sing N N 165 GLN CA CB sing N N 166 GLN CA HA sing N N 167 GLN C O doub N N 168 GLN C OXT sing N N 169 GLN CB CG sing N N 170 GLN CB HB2 sing N N 171 GLN CB HB3 sing N N 172 GLN CG CD sing N N 173 GLN CG HG2 sing N N 174 GLN CG HG3 sing N N 175 GLN CD OE1 doub N N 176 GLN CD NE2 sing N N 177 GLN NE2 HE21 sing N N 178 GLN NE2 HE22 sing N N 179 GLN OXT HXT sing N N 180 GLU N CA sing N N 181 GLU N H sing N N 182 GLU N H2 sing N N 183 GLU CA C sing N N 184 GLU CA CB sing N N 185 GLU CA HA sing N N 186 GLU C O doub N N 187 GLU C OXT sing N N 188 GLU CB CG sing N N 189 GLU CB HB2 sing N N 190 GLU CB HB3 sing N N 191 GLU CG CD sing N N 192 GLU CG HG2 sing N N 193 GLU CG HG3 sing N N 194 GLU CD OE1 doub N N 195 GLU CD OE2 sing N N 196 GLU OE2 HE2 sing N N 197 GLU OXT HXT sing N N 198 GLY N CA sing N N 199 GLY N H sing N N 200 GLY N H2 sing N N 201 GLY CA C sing N N 202 GLY CA HA2 sing N N 203 GLY CA HA3 sing N N 204 GLY C O doub N N 205 GLY C OXT sing N N 206 GLY OXT HXT sing N N 207 HOH O H1 sing N N 208 HOH O H2 sing N N 209 ILE N CA sing N N 210 ILE N H sing N N 211 ILE N H2 sing N N 212 ILE CA C sing N N 213 ILE CA CB sing N N 214 ILE CA HA sing N N 215 ILE C O doub N N 216 ILE C OXT sing N N 217 ILE CB CG1 sing N N 218 ILE CB CG2 sing N N 219 ILE CB HB sing N N 220 ILE CG1 CD1 sing N N 221 ILE CG1 HG12 sing N N 222 ILE CG1 HG13 sing N N 223 ILE CG2 HG21 sing N N 224 ILE CG2 HG22 sing N N 225 ILE CG2 HG23 sing N N 226 ILE CD1 HD11 sing N N 227 ILE CD1 HD12 sing N N 228 ILE CD1 HD13 sing N N 229 ILE OXT HXT sing N N 230 LEU N CA sing N N 231 LEU N H sing N N 232 LEU N H2 sing N N 233 LEU CA C sing N N 234 LEU CA CB sing N N 235 LEU CA HA sing N N 236 LEU C O doub N N 237 LEU C OXT sing N N 238 LEU CB CG sing N N 239 LEU CB HB2 sing N N 240 LEU CB HB3 sing N N 241 LEU CG CD1 sing N N 242 LEU CG CD2 sing N N 243 LEU CG HG sing N N 244 LEU CD1 HD11 sing N N 245 LEU CD1 HD12 sing N N 246 LEU CD1 HD13 sing N N 247 LEU CD2 HD21 sing N N 248 LEU CD2 HD22 sing N N 249 LEU CD2 HD23 sing N N 250 LEU OXT HXT sing N N 251 LYS N CA sing N N 252 LYS N H sing N N 253 LYS N H2 sing N N 254 LYS CA C sing N N 255 LYS CA CB sing N N 256 LYS CA HA sing N N 257 LYS C O doub N N 258 LYS C OXT sing N N 259 LYS CB CG sing N N 260 LYS CB HB2 sing N N 261 LYS CB HB3 sing N N 262 LYS CG CD sing N N 263 LYS CG HG2 sing N N 264 LYS CG HG3 sing N N 265 LYS CD CE sing N N 266 LYS CD HD2 sing N N 267 LYS CD HD3 sing N N 268 LYS CE NZ sing N N 269 LYS CE HE2 sing N N 270 LYS CE HE3 sing N N 271 LYS NZ HZ1 sing N N 272 LYS NZ HZ2 sing N N 273 LYS NZ HZ3 sing N N 274 LYS OXT HXT sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # _atom_sites.entry_id 2TMV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'SEE REMARK 7.' # loop_ _atom_type.symbol C CA N O P S # loop_