data_2TRA # _entry.id 2TRA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2TRA pdb_00002tra 10.2210/pdb2tra/pdb RCSB TRNA07 ? ? WWPDB D_1000178698 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1987-11-06 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2016-06-22 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' Advisory 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' pdbx_validate_polymer_linkage 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.value' 6 5 'Structure model' '_struct_conn.conn_type_id' 7 5 'Structure model' '_struct_conn.id' 8 5 'Structure model' '_struct_conn.pdbx_dist_value' 9 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 11 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2TRA _pdbx_database_status.recvd_initial_deposition_date 1987-11-06 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Westhof, E.' 1 'Dumas, P.' 2 'Moras, D.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals.' 'Acta Crystallogr.,Sect.A' 44 112 123 1988 ACACEQ DK 0108-7673 0621 ? 3272146 10.1107/S010876738700446X 1 'Hydration of Transfer RNA Molecules. A Crystallographic Study' Biochimie 70 145 ? 1988 BICMBE FR 0300-9084 0466 ? ? ? 2 'Thee-Dimensional Structure of Yeast T-RNA-ASP. I. Structure Determination' 'Acta Crystallogr.,Sect.B' 42 272 ? 1986 ASBSDK DK 0108-7681 0622 ? ? ? 3 'Anticodon-Anticodon Interaction Induces Conformational Changes in T-RNA. Yeast T-RNA-ASP, a Model for T-RNA-M-RNA Recognition' Proc.Natl.Acad.Sci.USA 83 932 ? 1986 PNASA6 US 0027-8424 0040 ? ? ? 4 'Crystallographic Refinement of Yeast Aspartic Acid Transfer RNA' J.Mol.Biol. 184 119 ? 1985 JMOBAK UK 0022-2836 0070 ? ? ? 5 'Crystal Structure of Yeast T-RNA-ASP. Atomic Coordinates' Biochimie 67 597 ? 1985 BICMBE FR 0300-9084 0466 ? ? ? 6 'Loop Stereochemistry and Dynamics in Transfer RNA' J.Biomol.Struct.Dyn. 1 337 ? 1983 JBSDD6 US 0739-1102 0646 ? ? ? 7 'Crystal Structure of Yeast T-RNA-ASP' Nature 288 669 ? 1980 NATUAS UK 0028-0836 0006 ? ? ? 8 'Yeast Transfer RNA-ASP. A New High-Resolution X-Ray Diffracting Crystal Form of a Transfer RNA' J.Mol.Biol. 115 91 ? 1977 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Westhof, E.' 1 ? primary 'Dumas, P.' 2 ? primary 'Moras, D.' 3 ? 1 'Westhof, E.' 4 ? 1 'Dumas, P.' 5 ? 1 'Moras, D.' 6 ? 2 'Comarmond, M.B.' 7 ? 2 'Giege, R.' 8 ? 2 'Thierry, J.C.' 9 ? 2 'Moras, D.' 10 ? 2 'Fischer, J.' 11 ? 3 'Moras, D.' 12 ? 3 'Dock, A.-C.' 13 ? 3 'Dumas, P.' 14 ? 3 'Westhof, E.' 15 ? 3 'Romby, P.' 16 ? 3 'Ebel, J.-P.' 17 ? 3 'Giege, R.' 18 ? 4 'Westhof, E.' 19 ? 4 'Dumas, P.' 20 ? 4 'Moras, D.' 21 ? 5 'Dumas, P.' 22 ? 5 'Ebel, J.P.' 23 ? 5 'Giege, R.' 24 ? 5 'Moras, D.' 25 ? 5 'Thierry, J.C.' 26 ? 5 'Westhof, E.' 27 ? 6 'Westhof, E.' 28 ? 6 'Dumas, P.' 29 ? 6 'Moras, D.' 30 ? 7 'Moras, D.' 31 ? 7 'Comarmond, M.B.' 32 ? 7 'Fischer, J.' 33 ? 7 'Weiss, R.' 34 ? 7 'Thierry, J.C.' 35 ? 7 'Ebel, J.P.' 36 ? 7 'Giege, R.' 37 ? 8 'Giege, R.' 38 ? 8 'Moras, D.' 39 ? 8 'Thierry, J.C.' 40 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat TRNAASP 24181.369 1 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 94 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;UCCGUGAUAGUU(PSU)AA(H2U)GG(H2U)CAGAAUGGGCGC(PSU)UGUC(1MG)CGUGCCAGAU(5MC)GGGG (5MU)(PSU)CAAUUCCCCGUCGCGGAGCCA ; _entity_poly.pdbx_seq_one_letter_code_can UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 C n 1 3 C n 1 4 G n 1 5 U n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 U n 1 13 PSU n 1 14 A n 1 15 A n 1 16 H2U n 1 17 G n 1 18 G n 1 19 H2U n 1 20 C n 1 21 A n 1 22 G n 1 23 A n 1 24 A n 1 25 U n 1 26 G n 1 27 G n 1 28 G n 1 29 C n 1 30 G n 1 31 C n 1 32 PSU n 1 33 U n 1 34 G n 1 35 U n 1 36 C n 1 37 1MG n 1 38 C n 1 39 G n 1 40 U n 1 41 G n 1 42 C n 1 43 C n 1 44 A n 1 45 G n 1 46 A n 1 47 U n 1 48 5MC n 1 49 G n 1 50 G n 1 51 G n 1 52 G n 1 53 5MU n 1 54 PSU n 1 55 C n 1 56 A n 1 57 A n 1 58 U n 1 59 U n 1 60 C n 1 61 C n 1 62 C n 1 63 C n 1 64 G n 1 65 U n 1 66 C n 1 67 G n 1 68 C n 1 69 G n 1 70 G n 1 71 A n 1 72 G n 1 73 C n 1 74 C n 1 75 A n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MG 'RNA linking' n "1N-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 PSU 13 13 13 PSU PSU A . n A 1 14 A 14 14 14 A A A . n A 1 15 A 15 15 15 A A A . n A 1 16 H2U 16 16 16 H2U H2U A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 H2U 19 19 19 H2U H2U A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 A 24 24 24 A A A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 PSU 32 32 32 PSU PSU A . n A 1 33 U 33 33 33 U U A . n A 1 34 G 34 34 34 G G A . n A 1 35 U 35 35 35 U U A . n A 1 36 C 36 36 36 C C A . n A 1 37 1MG 37 37 37 1MG 1MG A . n A 1 38 C 38 38 38 C C A . n A 1 39 G 39 39 39 G G A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 C 43 43 43 C C A . n A 1 44 A 44 44 44 A A A . n A 1 45 G 45 45 45 G G A . n A 1 46 A 46 46 46 A A A . n A 1 47 U 47 47 47 U U A . n A 1 48 5MC 48 48 48 5MC 5MC A . n A 1 49 G 49 49 49 G G A . n A 1 50 G 50 50 50 G G A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 5MU 53 53 53 5MU 5MU A . n A 1 54 PSU 54 54 54 PSU PSU A . n A 1 55 C 55 55 55 C C A . n A 1 56 A 56 56 56 A A A . n A 1 57 A 57 57 57 A A A . n A 1 58 U 58 58 58 U U A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n A 1 62 C 62 62 62 C C A . n A 1 63 C 63 63 63 C C A . n A 1 64 G 64 64 64 G G A . n A 1 65 U 65 65 65 U U A . n A 1 66 C 66 66 66 C C A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 G 70 70 70 G G A . n A 1 71 A 71 71 71 A A A . n A 1 72 G 72 72 72 G G A . n A 1 73 C 73 73 73 C C A . n A 1 74 C 74 74 ? ? ? A . n A 1 75 A 75 75 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SPM 1 76 76 SPM SPM A . C 3 MG 1 77 77 MG MO6 A . D 4 HOH 1 78 78 HOH HOH A . D 4 HOH 2 79 79 HOH HOH A . D 4 HOH 3 80 80 HOH HOH A . D 4 HOH 4 81 81 HOH HOH A . D 4 HOH 5 82 82 HOH HOH A . D 4 HOH 6 83 83 HOH HOH A . D 4 HOH 7 84 84 HOH HOH A . D 4 HOH 8 85 85 HOH HOH A . D 4 HOH 9 86 86 HOH HOH A . D 4 HOH 10 87 87 HOH HOH A . D 4 HOH 11 88 88 HOH HOH A . D 4 HOH 12 89 89 HOH HOH A . D 4 HOH 13 90 90 HOH HOH A . D 4 HOH 14 91 91 HOH HOH A . D 4 HOH 15 92 92 HOH HOH A . D 4 HOH 16 93 93 HOH HOH A . D 4 HOH 17 94 94 HOH HOH A . D 4 HOH 18 95 95 HOH HOH A . D 4 HOH 19 96 96 HOH HOH A . D 4 HOH 20 97 97 HOH HOH A . D 4 HOH 21 98 98 HOH HOH A . D 4 HOH 22 99 99 HOH HOH A . D 4 HOH 23 100 100 HOH HOH A . D 4 HOH 24 101 101 HOH HOH A . D 4 HOH 25 102 102 HOH HOH A . D 4 HOH 26 103 103 HOH HOH A . D 4 HOH 27 104 104 HOH HOH A . D 4 HOH 28 105 105 HOH HOH A . D 4 HOH 29 106 106 HOH HOH A . D 4 HOH 30 107 107 HOH HOH A . D 4 HOH 31 108 108 HOH HOH A . D 4 HOH 32 109 109 HOH HOH A . D 4 HOH 33 110 110 HOH HOH A . D 4 HOH 34 111 111 HOH HOH A . D 4 HOH 35 112 112 HOH HOH A . D 4 HOH 36 113 113 HOH HOH A . D 4 HOH 37 114 114 HOH HOH A . D 4 HOH 38 115 115 HOH HOH A . D 4 HOH 39 116 116 HOH HOH A . D 4 HOH 40 117 117 HOH HOH A . D 4 HOH 41 118 118 HOH HOH A . D 4 HOH 42 119 119 HOH HOH A . D 4 HOH 43 120 120 HOH HOH A . D 4 HOH 44 121 121 HOH HOH A . D 4 HOH 45 122 122 HOH HOH A . D 4 HOH 46 123 123 HOH HOH A . D 4 HOH 47 124 124 HOH HOH A . D 4 HOH 48 125 125 HOH HOH A . D 4 HOH 49 126 126 HOH HOH A . D 4 HOH 50 127 127 HOH HOH A . D 4 HOH 51 128 128 HOH HOH A . D 4 HOH 52 129 129 HOH HOH A . D 4 HOH 53 130 130 HOH HOH A . D 4 HOH 54 131 131 HOH HOH A . D 4 HOH 55 132 132 HOH HOH A . D 4 HOH 56 133 133 HOH HOH A . D 4 HOH 57 134 134 HOH HOH A . D 4 HOH 58 135 135 HOH HOH A . D 4 HOH 59 136 136 HOH HOH A . D 4 HOH 60 137 137 HOH HOH A . D 4 HOH 61 138 138 HOH HOH A . D 4 HOH 62 139 139 HOH HOH A . D 4 HOH 63 140 140 HOH HOH A . D 4 HOH 64 141 141 HOH HOH A . D 4 HOH 65 142 142 HOH HOH A . D 4 HOH 66 143 143 HOH HOH A . D 4 HOH 67 144 144 HOH HOH A . D 4 HOH 68 145 145 HOH HOH A . D 4 HOH 69 146 146 HOH HOH A . D 4 HOH 70 147 147 HOH HOH A . D 4 HOH 71 148 148 HOH HOH A . D 4 HOH 72 149 149 HOH HOH A . D 4 HOH 73 150 150 HOH HOH A . D 4 HOH 74 151 151 HOH HOH A . D 4 HOH 75 152 152 HOH HOH A . D 4 HOH 76 153 153 HOH HOH A . D 4 HOH 77 154 154 HOH HOH A . D 4 HOH 78 155 155 HOH HOH A . D 4 HOH 79 156 156 HOH HOH A . D 4 HOH 80 157 157 HOH HOH A . D 4 HOH 81 158 158 HOH HOH A . D 4 HOH 82 159 159 HOH HOH A . D 4 HOH 83 160 160 HOH HOH A . D 4 HOH 84 161 161 HOH HOH A . D 4 HOH 85 162 162 HOH HOH A . D 4 HOH 86 163 163 HOH HOH A . D 4 HOH 87 164 164 HOH HOH A . D 4 HOH 88 165 165 HOH HOH A . D 4 HOH 89 166 77 HOH MO6 A . D 4 HOH 90 167 77 HOH MO6 A . D 4 HOH 91 168 77 HOH MO6 A . D 4 HOH 92 169 77 HOH MO6 A . D 4 HOH 93 170 77 HOH MO6 A . D 4 HOH 94 171 77 HOH MO6 A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 2TRA _cell.length_a 61.500 _cell.length_b 67.500 _cell.length_c 149.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2TRA _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.entry_id 2TRA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.21 _exptl_crystal.density_percent_sol 61.66 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _refine.entry_id 2TRA _refine.ls_number_reflns_obs 4335 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 3.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1560 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1669 _refine_hist.d_res_high 3.000 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.022 ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 2TRA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2TRA _struct.title 'RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2TRA _struct_keywords.pdbx_keywords T-RNA _struct_keywords.text 'T-RNA, SINGLE STRAND, LOOPS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2TRA _struct_ref.pdbx_db_accession 2TRA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2TRA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 75 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2TRA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 75 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 75 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 12 "O3'" ? ? ? 1_555 A PSU 13 P ? ? A U 12 A PSU 13 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? A PSU 13 "O3'" ? ? ? 1_555 A A 14 P ? ? A PSU 13 A A 14 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? A A 15 "O3'" ? ? ? 1_555 A H2U 16 P ? ? A A 15 A H2U 16 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale4 covale both ? A H2U 16 "O3'" ? ? ? 1_555 A G 17 P ? ? A H2U 16 A G 17 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale5 covale both ? A G 18 "O3'" A ? ? 1_555 A H2U 19 P ? ? A G 18 A H2U 19 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale6 covale both ? A H2U 19 "O3'" ? ? ? 1_555 A C 20 P ? ? A H2U 19 A C 20 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale7 covale both ? A C 31 "O3'" ? ? ? 1_555 A PSU 32 P ? ? A C 31 A PSU 32 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale8 covale both ? A PSU 32 "O3'" ? ? ? 1_555 A U 33 P ? ? A PSU 32 A U 33 1_555 ? ? ? ? ? ? ? 1.638 ? ? covale9 covale both ? A C 36 "O3'" A ? ? 1_555 A 1MG 37 P ? ? A C 36 A 1MG 37 1_555 ? ? ? ? ? ? ? 1.637 ? ? covale10 covale both ? A 1MG 37 "O3'" ? ? ? 1_555 A C 38 P ? ? A 1MG 37 A C 38 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale11 covale both ? A U 47 "O3'" ? ? ? 1_555 A 5MC 48 P ? ? A U 47 A 5MC 48 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale12 covale both ? A 5MC 48 "O3'" ? ? ? 1_555 A G 49 P ? ? A 5MC 48 A G 49 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale13 covale both ? A G 52 "O3'" ? ? ? 1_555 A 5MU 53 P ? ? A G 52 A 5MU 53 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale14 covale both ? A 5MU 53 "O3'" ? ? ? 1_555 A PSU 54 P A ? A 5MU 53 A PSU 54 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale15 covale both ? A 5MU 53 "O3'" ? ? ? 1_555 A PSU 54 P B ? A 5MU 53 A PSU 54 1_555 ? ? ? ? ? ? ? 1.260 ? ? covale16 covale both ? A PSU 54 "O3'" A ? ? 1_555 A C 55 P ? ? A PSU 54 A C 55 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale17 covale both ? A PSU 54 "O3'" B ? ? 1_555 A C 55 P ? ? A PSU 54 A C 55 1_555 ? ? ? ? ? ? ? 1.955 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 77 A HOH 166 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 77 A HOH 167 1_555 ? ? ? ? ? ? ? 1.978 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 77 A HOH 168 1_555 ? ? ? ? ? ? ? 1.978 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 77 A HOH 169 1_555 ? ? ? ? ? ? ? 1.987 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 77 A HOH 170 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 77 A HOH 171 1_555 ? ? ? ? ? ? ? 1.985 ? ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 1 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 1 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 2 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 2 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 2 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 3 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 3 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 3 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 4 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 4 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 4 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 67 O6 ? ? A U 5 A G 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 67 N1 ? ? A U 5 A G 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 A G 64 O6 ? ? A A 7 A G 64 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog18 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 7 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 7 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog23 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 23 N6 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 25 O2 ? ? A G 10 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A U 25 N3 ? ? A G 10 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 45 N2 ? ? A G 10 A G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 11 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 11 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A PSU 13 N3 ? ? ? 1_555 A G 22 O6 ? ? A PSU 13 A G 22 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog32 hydrog ? ? A PSU 13 O4 ? ? ? 1_555 A G 22 N1 ? ? A PSU 13 A G 22 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog33 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 21 N3 ? ? A A 14 A A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 15 A U 47 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 47 O2 ? ? A A 15 A U 47 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A PSU 54 O4 A ? A G 17 A PSU 54 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 18 N1 A ? ? 1_555 A C 55 N3 ? ? A G 18 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 N2 A ? ? 1_555 A C 55 O2 ? ? A G 18 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 18 O6 A ? ? 1_555 A C 55 N4 ? ? A G 18 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 N7 ? ? ? 1_555 A A 46 N6 ? ? A G 22 A A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 44 N1 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog42 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 44 N6 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog43 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 29 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 29 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 29 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 30 N1 ? ? ? 1_555 A U 40 O2 ? ? A G 30 A U 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog53 hydrog ? ? A G 30 O6 ? ? ? 1_555 A U 40 N3 ? ? A G 30 A U 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog54 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A 5MC 48 N3 ? ? ? 1_555 A G 64 N1 ? ? A 5MC 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A 5MC 48 N4 ? ? ? 1_555 A G 64 O6 ? ? A 5MC 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A 5MC 48 O2 ? ? ? 1_555 A G 64 N2 ? ? A 5MC 48 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 49 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 49 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 49 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 49 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 49 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 49 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 50 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 51 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 52 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A 5MU 53 N3 ? ? ? 1_555 A A 57 N7 ? ? A 5MU 53 A A 57 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog73 hydrog ? ? A 5MU 53 O2 ? ? ? 1_555 A A 57 N6 ? ? A 5MU 53 A A 57 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 166 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 167 ? 1_555 179.8 ? 2 O ? D HOH . ? A HOH 166 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 168 ? 1_555 90.0 ? 3 O ? D HOH . ? A HOH 167 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 168 ? 1_555 90.1 ? 4 O ? D HOH . ? A HOH 166 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 169 ? 1_555 90.1 ? 5 O ? D HOH . ? A HOH 167 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 169 ? 1_555 89.8 ? 6 O ? D HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 169 ? 1_555 179.5 ? 7 O ? D HOH . ? A HOH 166 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 170 ? 1_555 90.0 ? 8 O ? D HOH . ? A HOH 167 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 170 ? 1_555 89.9 ? 9 O ? D HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 170 ? 1_555 90.1 ? 10 O ? D HOH . ? A HOH 169 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 170 ? 1_555 90.4 ? 11 O ? D HOH . ? A HOH 166 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 171 ? 1_555 90.1 ? 12 O ? D HOH . ? A HOH 167 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 171 ? 1_555 90.0 ? 13 O ? D HOH . ? A HOH 168 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 171 ? 1_555 89.7 ? 14 O ? D HOH . ? A HOH 169 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 171 ? 1_555 89.8 ? 15 O ? D HOH . ? A HOH 170 ? 1_555 MG ? C MG . ? A MG 77 ? 1_555 O ? D HOH . ? A HOH 171 ? 1_555 179.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SPM 76 ? 7 'BINDING SITE FOR RESIDUE SPM A 76' AC2 Software A MG 77 ? 7 'BINDING SITE FOR RESIDUE MG A 77' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 U A 5 ? U A 5 . ? 1_555 ? 2 AC1 7 G A 6 ? G A 6 . ? 1_555 ? 3 AC1 7 H2U A 19 ? H2U A 19 . ? 5_545 ? 4 AC1 7 G A 67 ? G A 67 . ? 1_555 ? 5 AC1 7 HOH D . ? HOH A 147 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 150 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 161 . ? 1_555 ? 8 AC2 7 C A 31 ? C A 31 . ? 1_555 ? 9 AC2 7 HOH D . ? HOH A 166 . ? 1_555 ? 10 AC2 7 HOH D . ? HOH A 167 . ? 1_555 ? 11 AC2 7 HOH D . ? HOH A 168 . ? 1_555 ? 12 AC2 7 HOH D . ? HOH A 169 . ? 1_555 ? 13 AC2 7 HOH D . ? HOH A 170 . ? 1_555 ? 14 AC2 7 HOH D . ? HOH A 171 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "C3'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 PSU _pdbx_validate_close_contact.auth_seq_id_1 54 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 OP2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 C _pdbx_validate_close_contact.auth_seq_id_2 55 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.44 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O3'" A U 33 ? ? 1_555 OP1 A G 34 ? B 3_554 1.77 2 1 N6 A A 56 ? ? 1_555 N3 A C 73 ? ? 5_455 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A G 17 ? ? P A G 18 ? B 1.437 1.607 -0.170 0.012 Y 2 1 "O3'" A 5MU 53 ? ? P A PSU 54 ? B 1.260 1.607 -0.347 0.012 Y 3 1 "O3'" A A 71 ? ? P A G 72 ? B 1.237 1.607 -0.370 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A U 1 ? ? C4 A U 1 ? ? C5 A U 1 ? ? 118.42 114.60 3.82 0.60 N 2 1 N3 A U 1 ? ? C4 A U 1 ? ? O4 A U 1 ? ? 114.19 119.40 -5.21 0.70 N 3 1 OP1 A C 3 ? ? P A C 3 ? ? OP2 A C 3 ? ? 110.32 119.60 -9.28 1.50 N 4 1 N1 A C 3 ? ? "C1'" A C 3 ? ? "C2'" A C 3 ? ? 104.57 112.00 -7.43 1.10 N 5 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.89 108.50 6.39 0.70 N 6 1 "O5'" A G 4 ? ? "C5'" A G 4 ? ? "C4'" A G 4 ? ? 103.83 109.40 -5.57 0.80 N 7 1 "C3'" A G 4 ? ? "O3'" A G 4 ? ? P A U 5 ? ? 111.92 119.70 -7.78 1.20 Y 8 1 C2 A U 5 ? ? N3 A U 5 ? ? C4 A U 5 ? ? 122.55 127.00 -4.45 0.60 N 9 1 N3 A U 5 ? ? C4 A U 5 ? ? C5 A U 5 ? ? 118.50 114.60 3.90 0.60 N 10 1 "O4'" A A 7 ? ? "C1'" A A 7 ? ? N9 A A 7 ? ? 112.99 108.50 4.49 0.70 N 11 1 N3 A U 8 ? ? C4 A U 8 ? ? C5 A U 8 ? ? 118.55 114.60 3.95 0.60 N 12 1 "O5'" A A 9 ? ? "C5'" A A 9 ? ? "C4'" A A 9 ? ? 102.23 109.40 -7.17 0.80 N 13 1 N1 A A 9 ? ? C2 A A 9 ? ? N3 A A 9 ? ? 126.08 129.30 -3.22 0.50 N 14 1 "O5'" A G 10 ? ? "C5'" A G 10 ? ? "C4'" A G 10 ? ? 97.85 109.40 -11.55 0.80 N 15 1 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 114.55 108.50 6.05 0.70 N 16 1 "O5'" A U 11 ? ? "C5'" A U 11 ? ? "C4'" A U 11 ? ? 99.96 109.40 -9.44 0.80 N 17 1 P A U 11 ? ? "O5'" A U 11 ? ? "C5'" A U 11 ? ? 110.88 120.90 -10.02 1.60 N 18 1 C2 A U 11 ? ? N3 A U 11 ? ? C4 A U 11 ? ? 123.19 127.00 -3.81 0.60 N 19 1 N3 A U 11 ? ? C4 A U 11 ? ? C5 A U 11 ? ? 118.42 114.60 3.82 0.60 N 20 1 "O5'" A U 12 ? ? "C5'" A U 12 ? ? "C4'" A U 12 ? ? 102.46 109.40 -6.94 0.80 N 21 1 "C1'" A U 12 ? ? "O4'" A U 12 ? ? "C4'" A U 12 ? ? 114.89 109.90 4.99 0.80 N 22 1 N1 A U 12 ? ? C2 A U 12 ? ? N3 A U 12 ? ? 118.69 114.90 3.79 0.60 N 23 1 C2 A U 12 ? ? N3 A U 12 ? ? C4 A U 12 ? ? 121.20 127.00 -5.80 0.60 N 24 1 N3 A U 12 ? ? C4 A U 12 ? ? C5 A U 12 ? ? 118.94 114.60 4.34 0.60 N 25 1 C5 A U 12 ? ? C4 A U 12 ? ? O4 A U 12 ? ? 121.56 125.90 -4.34 0.60 N 26 1 C5 A A 14 ? ? C6 A A 14 ? ? N1 A A 14 ? ? 114.55 117.70 -3.15 0.50 N 27 1 OP1 A A 15 ? ? P A A 15 ? ? OP2 A A 15 ? ? 109.51 119.60 -10.09 1.50 N 28 1 C6 A A 15 ? ? N1 A A 15 ? ? C2 A A 15 ? ? 122.33 118.60 3.73 0.60 N 29 1 N1 A A 15 ? ? C2 A A 15 ? ? N3 A A 15 ? ? 125.50 129.30 -3.80 0.50 N 30 1 N1 A A 15 ? ? C6 A A 15 ? ? N6 A A 15 ? ? 122.48 118.60 3.88 0.60 N 31 1 "O3'" A G 17 ? ? P A G 18 ? B OP2 A G 18 ? B 89.72 105.20 -15.48 2.20 Y 32 1 "O3'" A G 17 ? ? P A G 18 ? B OP1 A G 18 ? B 119.41 110.50 8.91 1.10 Y 33 1 C5 A G 18 ? A C6 A G 18 ? A N1 A G 18 ? A 115.30 111.50 3.80 0.50 N 34 1 C5 A G 18 ? B C6 A G 18 ? B N1 A G 18 ? B 114.85 111.50 3.35 0.50 N 35 1 "C3'" A C 20 ? ? "O3'" A C 20 ? ? P A A 21 ? ? 126.91 119.70 7.21 1.20 Y 36 1 OP1 A G 22 ? ? P A G 22 ? ? OP2 A G 22 ? ? 109.63 119.60 -9.97 1.50 N 37 1 "O4'" A A 23 ? ? "C1'" A A 23 ? ? N9 A A 23 ? ? 113.65 108.50 5.15 0.70 N 38 1 "O4'" A A 24 ? ? "C1'" A A 24 ? ? N9 A A 24 ? ? 113.56 108.50 5.06 0.70 N 39 1 C6 A A 24 ? ? N1 A A 24 ? ? C2 A A 24 ? ? 122.57 118.60 3.97 0.60 N 40 1 N1 A A 24 ? ? C2 A A 24 ? ? N3 A A 24 ? ? 126.08 129.30 -3.22 0.50 N 41 1 C5 A A 24 ? ? C6 A A 24 ? ? N1 A A 24 ? ? 114.01 117.70 -3.69 0.50 N 42 1 "O5'" A U 25 ? ? "C5'" A U 25 ? ? "C4'" A U 25 ? ? 103.81 109.40 -5.59 0.80 N 43 1 C2 A U 25 ? ? N3 A U 25 ? ? C4 A U 25 ? ? 123.29 127.00 -3.71 0.60 N 44 1 "O5'" A G 26 ? ? "C5'" A G 26 ? ? "C4'" A G 26 ? ? 104.20 109.40 -5.20 0.80 N 45 1 C5 A G 26 ? ? C6 A G 26 ? ? N1 A G 26 ? ? 114.86 111.50 3.36 0.50 N 46 1 "C3'" A G 26 ? ? "O3'" A G 26 ? ? P A G 27 ? ? 111.87 119.70 -7.83 1.20 Y 47 1 "O5'" A G 27 ? ? P A G 27 ? ? OP2 A G 27 ? ? 118.31 110.70 7.61 1.20 N 48 1 "O5'" A G 28 ? ? "C5'" A G 28 ? ? "C4'" A G 28 ? ? 104.15 109.40 -5.25 0.80 N 49 1 "O4'" A C 29 ? ? "C1'" A C 29 ? ? N1 A C 29 ? ? 112.92 108.50 4.42 0.70 N 50 1 N3 A C 29 ? ? C4 A C 29 ? ? C5 A C 29 ? ? 119.38 121.90 -2.52 0.40 N 51 1 OP1 A G 30 ? ? P A G 30 ? ? OP2 A G 30 ? ? 110.46 119.60 -9.14 1.50 N 52 1 "C1'" A G 30 ? ? "O4'" A G 30 ? ? "C4'" A G 30 ? ? 115.40 109.90 5.50 0.80 N 53 1 "O4'" A G 30 ? ? "C1'" A G 30 ? ? N9 A G 30 ? ? 116.11 108.50 7.61 0.70 N 54 1 C5 A G 30 ? ? C6 A G 30 ? ? N1 A G 30 ? ? 114.79 111.50 3.29 0.50 N 55 1 N1 A G 30 ? ? C6 A G 30 ? ? O6 A G 30 ? ? 116.30 119.90 -3.60 0.60 N 56 1 "O4'" A C 31 ? ? "C1'" A C 31 ? ? N1 A C 31 ? ? 112.77 108.50 4.27 0.70 N 57 1 C2 A U 33 ? ? N3 A U 33 ? ? C4 A U 33 ? ? 122.84 127.00 -4.16 0.60 N 58 1 N3 A U 33 ? ? C4 A U 33 ? ? C5 A U 33 ? ? 119.02 114.60 4.42 0.60 N 59 1 C5 A G 34 ? A C6 A G 34 ? A N1 A G 34 ? A 114.87 111.50 3.37 0.50 N 60 1 "O4'" A U 35 ? A "C1'" A U 35 ? A N1 A U 35 ? A 114.49 108.50 5.99 0.70 N 61 1 C2 A U 35 ? A N3 A U 35 ? A C4 A U 35 ? A 121.51 127.00 -5.49 0.60 N 62 1 C2 A U 35 ? B N3 A U 35 ? B C4 A U 35 ? B 122.74 127.00 -4.26 0.60 N 63 1 N3 A U 35 ? A C4 A U 35 ? A C5 A U 35 ? A 119.46 114.60 4.86 0.60 N 64 1 N3 A U 35 ? B C4 A U 35 ? B C5 A U 35 ? B 119.20 114.60 4.60 0.60 N 65 1 "C3'" A U 35 ? B "O3'" A U 35 ? B P A C 36 ? B 127.00 119.70 7.30 1.20 Y 66 1 OP1 A C 36 ? A P A C 36 ? A OP2 A C 36 ? A 110.42 119.60 -9.18 1.50 N 67 1 OP1 A C 36 ? B P A C 36 ? B OP2 A C 36 ? B 110.25 119.60 -9.35 1.50 N 68 1 N3 A C 36 ? A C4 A C 36 ? A C5 A C 36 ? A 119.45 121.90 -2.45 0.40 N 69 1 "C3'" A C 36 ? A "O3'" A C 36 ? A P A 1MG 37 ? ? 108.63 119.70 -11.07 1.20 Y 70 1 "O5'" A C 38 ? ? "C5'" A C 38 ? ? "C4'" A C 38 ? ? 101.26 109.40 -8.14 0.80 N 71 1 "O4'" A C 38 ? ? "C1'" A C 38 ? ? N1 A C 38 ? ? 113.43 108.50 4.93 0.70 N 72 1 "O5'" A G 39 ? ? P A G 39 ? ? OP2 A G 39 ? ? 120.68 110.70 9.98 1.20 N 73 1 "O5'" A U 40 ? ? "C5'" A U 40 ? ? "C4'" A U 40 ? ? 99.11 109.40 -10.29 0.80 N 74 1 P A U 40 ? ? "O5'" A U 40 ? ? "C5'" A U 40 ? ? 110.29 120.90 -10.61 1.60 N 75 1 C2 A U 40 ? ? N3 A U 40 ? ? C4 A U 40 ? ? 121.87 127.00 -5.13 0.60 N 76 1 N3 A U 40 ? ? C4 A U 40 ? ? C5 A U 40 ? ? 119.11 114.60 4.51 0.60 N 77 1 P A G 41 ? ? "O5'" A G 41 ? ? "C5'" A G 41 ? ? 106.50 120.90 -14.40 1.60 N 78 1 OP1 A C 42 ? ? P A C 42 ? ? OP2 A C 42 ? ? 107.14 119.60 -12.46 1.50 N 79 1 "O5'" A C 42 ? ? "C5'" A C 42 ? ? "C4'" A C 42 ? ? 104.43 109.40 -4.97 0.80 N 80 1 C2 A C 42 ? ? N3 A C 42 ? ? C4 A C 42 ? ? 122.98 119.90 3.08 0.50 N 81 1 "C3'" A C 42 ? ? "O3'" A C 42 ? ? P A C 43 ? ? 109.35 119.70 -10.35 1.20 Y 82 1 "O5'" A C 43 ? ? P A C 43 ? ? OP2 A C 43 ? ? 119.44 110.70 8.74 1.20 N 83 1 "O5'" A A 44 ? ? "C5'" A A 44 ? ? "C4'" A A 44 ? ? 103.55 109.40 -5.85 0.80 N 84 1 "O4'" A A 44 ? ? "C1'" A A 44 ? ? N9 A A 44 ? ? 113.24 108.50 4.74 0.70 N 85 1 N9 A G 45 ? ? "C1'" A G 45 ? ? "C2'" A G 45 ? ? 103.23 112.00 -8.77 1.10 N 86 1 "O4'" A G 45 ? ? "C1'" A G 45 ? ? N9 A G 45 ? ? 118.78 108.50 10.28 0.70 N 87 1 "O5'" A A 46 ? ? "C5'" A A 46 ? ? "C4'" A A 46 ? ? 102.53 109.40 -6.87 0.80 N 88 1 P A A 46 ? ? "O5'" A A 46 ? ? "C5'" A A 46 ? ? 109.13 120.90 -11.77 1.60 N 89 1 N1 A A 46 ? ? C2 A A 46 ? ? N3 A A 46 ? ? 126.08 129.30 -3.22 0.50 N 90 1 OP1 A U 47 ? ? P A U 47 ? ? OP2 A U 47 ? ? 110.14 119.60 -9.46 1.50 N 91 1 "O5'" A U 47 ? ? "C5'" A U 47 ? ? "C4'" A U 47 ? ? 103.94 109.40 -5.46 0.80 N 92 1 C2 A U 47 ? ? N3 A U 47 ? ? C4 A U 47 ? ? 122.46 127.00 -4.54 0.60 N 93 1 N3 A U 47 ? ? C4 A U 47 ? ? C5 A U 47 ? ? 118.72 114.60 4.12 0.60 N 94 1 "O5'" A G 49 ? ? "C5'" A G 49 ? ? "C4'" A G 49 ? ? 100.48 109.40 -8.92 0.80 N 95 1 N9 A G 51 ? ? "C1'" A G 51 ? ? "C2'" A G 51 ? ? 104.75 112.00 -7.25 1.10 N 96 1 "O4'" A G 51 ? ? "C1'" A G 51 ? ? N9 A G 51 ? ? 113.08 108.50 4.58 0.70 N 97 1 C5 A G 51 ? ? C6 A G 51 ? ? N1 A G 51 ? ? 114.98 111.50 3.48 0.50 N 98 1 C5 A G 52 ? ? C6 A G 52 ? ? N1 A G 52 ? ? 114.95 111.50 3.45 0.50 N 99 1 "C3'" A 5MU 53 ? ? "O3'" A 5MU 53 ? ? P A PSU 54 ? B 111.77 119.70 -7.93 1.20 Y 100 1 "O3'" A 5MU 53 ? ? P A PSU 54 ? B OP2 A PSU 54 ? B 129.94 110.50 19.44 1.10 Y 101 1 "O3'" A 5MU 53 ? ? P A PSU 54 ? B OP1 A PSU 54 ? B 88.96 105.20 -16.24 2.20 Y 102 1 "C3'" A PSU 54 ? A "O3'" A PSU 54 ? A P A C 55 ? ? 110.03 119.70 -9.67 1.20 Y 103 1 OP1 A A 56 ? ? P A A 56 ? ? OP2 A A 56 ? ? 110.11 119.60 -9.49 1.50 N 104 1 C5 A A 56 ? ? C6 A A 56 ? ? N1 A A 56 ? ? 114.65 117.70 -3.05 0.50 N 105 1 "O5'" A A 57 ? ? "C5'" A A 57 ? ? "C4'" A A 57 ? ? 103.51 109.40 -5.89 0.80 N 106 1 N1 A A 57 ? ? C2 A A 57 ? ? N3 A A 57 ? ? 125.78 129.30 -3.52 0.50 N 107 1 C2 A U 58 ? ? N3 A U 58 ? ? C4 A U 58 ? ? 121.97 127.00 -5.03 0.60 N 108 1 N3 A U 58 ? ? C4 A U 58 ? ? C5 A U 58 ? ? 119.88 114.60 5.28 0.60 N 109 1 "O5'" A U 59 ? ? P A U 59 ? ? OP2 A U 59 ? ? 117.92 110.70 7.22 1.20 N 110 1 "O5'" A U 59 ? ? "C5'" A U 59 ? ? "C4'" A U 59 ? ? 104.10 109.40 -5.30 0.80 N 111 1 C2 A U 59 ? ? N3 A U 59 ? ? C4 A U 59 ? ? 122.49 127.00 -4.51 0.60 N 112 1 N3 A U 59 ? ? C4 A U 59 ? ? C5 A U 59 ? ? 118.77 114.60 4.17 0.60 N 113 1 "C3'" A U 59 ? ? "O3'" A U 59 ? ? P A C 60 ? ? 100.68 119.70 -19.02 1.20 Y 114 1 "O5'" A C 63 ? ? "C5'" A C 63 ? ? "C4'" A C 63 ? ? 103.29 109.40 -6.11 0.80 N 115 1 "O4'" A C 63 ? ? "C1'" A C 63 ? ? N1 A C 63 ? ? 113.99 108.50 5.49 0.70 N 116 1 N3 A C 63 ? ? C4 A C 63 ? ? C5 A C 63 ? ? 119.13 121.90 -2.77 0.40 N 117 1 "C3'" A C 63 ? ? "O3'" A C 63 ? ? P A G 64 ? ? 109.23 119.70 -10.47 1.20 Y 118 1 "O5'" A U 65 ? ? "C5'" A U 65 ? ? "C4'" A U 65 ? ? 102.16 109.40 -7.24 0.80 N 119 1 N1 A U 65 ? ? C2 A U 65 ? ? N3 A U 65 ? ? 118.76 114.90 3.86 0.60 N 120 1 C2 A U 65 ? ? N3 A U 65 ? ? C4 A U 65 ? ? 121.89 127.00 -5.11 0.60 N 121 1 N3 A U 65 ? ? C4 A U 65 ? ? C5 A U 65 ? ? 118.96 114.60 4.36 0.60 N 122 1 C5 A U 65 ? ? C4 A U 65 ? ? O4 A U 65 ? ? 120.18 125.90 -5.72 0.60 N 123 1 OP1 A C 66 ? ? P A C 66 ? ? OP2 A C 66 ? ? 109.79 119.60 -9.81 1.50 N 124 1 "C3'" A C 68 ? ? "O3'" A C 68 ? ? P A G 69 ? ? 110.97 119.70 -8.73 1.20 Y 125 1 OP1 A G 69 ? ? P A G 69 ? ? OP2 A G 69 ? ? 107.54 119.60 -12.06 1.50 N 126 1 "O5'" A G 69 ? ? P A G 69 ? ? OP2 A G 69 ? ? 118.90 110.70 8.20 1.20 N 127 1 N9 A G 69 ? ? "C1'" A G 69 ? ? "C2'" A G 69 ? ? 103.89 112.00 -8.11 1.10 N 128 1 "O4'" A G 69 ? ? "C1'" A G 69 ? ? N9 A G 69 ? ? 112.72 108.50 4.22 0.70 N 129 1 C6 A G 69 ? ? N1 A G 69 ? ? C2 A G 69 ? ? 121.41 125.10 -3.69 0.60 N 130 1 C5 A G 69 ? ? C6 A G 69 ? ? N1 A G 69 ? ? 114.76 111.50 3.26 0.50 N 131 1 "O5'" A G 70 ? ? "C5'" A G 70 ? ? "C4'" A G 70 ? ? 103.76 109.40 -5.64 0.80 N 132 1 C5 A G 70 ? ? C6 A G 70 ? ? N1 A G 70 ? ? 114.73 111.50 3.23 0.50 N 133 1 "C3'" A G 70 ? ? "O3'" A G 70 ? ? P A A 71 ? ? 111.57 119.70 -8.13 1.20 Y 134 1 C6 A A 71 ? ? N1 A A 71 ? ? C2 A A 71 ? ? 123.54 118.60 4.94 0.60 N 135 1 N1 A A 71 ? ? C2 A A 71 ? ? N3 A A 71 ? ? 126.20 129.30 -3.10 0.50 N 136 1 C5 A A 71 ? ? C6 A A 71 ? ? N1 A A 71 ? ? 113.90 117.70 -3.80 0.50 N 137 1 "C3'" A A 71 ? ? "O3'" A A 71 ? ? P A G 72 ? B 134.50 119.70 14.80 1.20 Y 138 1 "O3'" A A 71 ? ? P A G 72 ? B "O5'" A G 72 ? B 77.26 104.00 -26.74 1.90 Y 139 1 "O3'" A A 71 ? ? P A G 72 ? B OP1 A G 72 ? B 130.57 110.50 20.07 1.10 Y 140 1 C5 A G 72 ? A C6 A G 72 ? A N1 A G 72 ? A 114.93 111.50 3.43 0.50 N 141 1 N3 A C 73 ? ? C4 A C 73 ? ? C5 A C 73 ? ? 119.29 121.90 -2.61 0.40 N # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 "O3'" A U 33 ? ? P A G 34 ? B 14.39 2 1 "O3'" A 5MU 53 ? ? P A PSU 54 ? B 1.26 3 1 "O3'" A PSU 54 ? B P A C 55 ? ? 1.96 4 1 "O3'" A A 71 ? ? P A G 72 ? B 1.24 5 1 "O3'" A G 72 ? B P A C 73 ? ? 3.94 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A PSU 13 A PSU 13 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 2 A H2U 16 A H2U 16 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 3 A H2U 19 A H2U 19 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 4 A PSU 32 A PSU 32 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 5 A 1MG 37 A 1MG 37 ? G "1N-METHYLGUANOSINE-5'-MONOPHOSPHATE" 6 A 5MC 48 A 5MC 48 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 7 A 5MU 53 A 5MU 53 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; 8 A PSU 54 A PSU 54 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 124 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 74 ? A C 74 2 1 Y 1 A A 75 ? A A 75 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1MG P P N N 1 1MG OP1 O N N 2 1MG OP2 O N N 3 1MG OP3 O N N 4 1MG "O5'" O N N 5 1MG "C5'" C N N 6 1MG "C4'" C N R 7 1MG "O4'" O N N 8 1MG "C3'" C N S 9 1MG "O3'" O N N 10 1MG "C2'" C N R 11 1MG "O2'" O N N 12 1MG "C1'" C N R 13 1MG N9 N Y N 14 1MG C8 C Y N 15 1MG N7 N Y N 16 1MG C5 C Y N 17 1MG C6 C N N 18 1MG O6 O N N 19 1MG N1 N N N 20 1MG CM1 C N N 21 1MG C2 C N N 22 1MG N2 N N N 23 1MG N3 N N N 24 1MG C4 C Y N 25 1MG HOP2 H N N 26 1MG HOP3 H N N 27 1MG "H5'" H N N 28 1MG "H5''" H N N 29 1MG "H4'" H N N 30 1MG "H3'" H N N 31 1MG "HO3'" H N N 32 1MG "H2'" H N N 33 1MG "HO2'" H N N 34 1MG "H1'" H N N 35 1MG H8 H N N 36 1MG HM11 H N N 37 1MG HM12 H N N 38 1MG HM13 H N N 39 1MG HN21 H N N 40 1MG HN22 H N N 41 5MC P P N N 42 5MC OP1 O N N 43 5MC OP2 O N N 44 5MC OP3 O N N 45 5MC "O5'" O N N 46 5MC "C5'" C N N 47 5MC "C4'" C N R 48 5MC "O4'" O N N 49 5MC "C3'" C N S 50 5MC "O3'" O N N 51 5MC "C2'" C N R 52 5MC "O2'" O N N 53 5MC "C1'" C N R 54 5MC N1 N N N 55 5MC C2 C N N 56 5MC O2 O N N 57 5MC N3 N N N 58 5MC C4 C N N 59 5MC N4 N N N 60 5MC C5 C N N 61 5MC C6 C N N 62 5MC CM5 C N N 63 5MC HOP2 H N N 64 5MC HOP3 H N N 65 5MC "H5'" H N N 66 5MC "H5''" H N N 67 5MC "H4'" H N N 68 5MC "H3'" H N N 69 5MC "HO3'" H N N 70 5MC "H2'" H N N 71 5MC "HO2'" H N N 72 5MC "H1'" H N N 73 5MC HN41 H N N 74 5MC HN42 H N N 75 5MC H6 H N N 76 5MC HM51 H N N 77 5MC HM52 H N N 78 5MC HM53 H N N 79 5MU N1 N N N 80 5MU C2 C N N 81 5MU N3 N N N 82 5MU C4 C N N 83 5MU C5 C N N 84 5MU C5M C N N 85 5MU C6 C N N 86 5MU O2 O N N 87 5MU O4 O N N 88 5MU "C1'" C N R 89 5MU "C2'" C N R 90 5MU "O2'" O N N 91 5MU "C3'" C N S 92 5MU "C4'" C N R 93 5MU "O3'" O N N 94 5MU "O4'" O N N 95 5MU "C5'" C N N 96 5MU "O5'" O N N 97 5MU P P N N 98 5MU OP1 O N N 99 5MU OP2 O N N 100 5MU OP3 O N N 101 5MU HN3 H N N 102 5MU H71 H N N 103 5MU H72 H N N 104 5MU H73 H N N 105 5MU H6 H N N 106 5MU "H1'" H N N 107 5MU "H2'" H N N 108 5MU "HO2'" H N N 109 5MU "H3'" H N N 110 5MU "H4'" H N N 111 5MU "HO3'" H N N 112 5MU "H5'" H N N 113 5MU "H5''" H N N 114 5MU HOP2 H N N 115 5MU HOP3 H N N 116 A OP3 O N N 117 A P P N N 118 A OP1 O N N 119 A OP2 O N N 120 A "O5'" O N N 121 A "C5'" C N N 122 A "C4'" C N R 123 A "O4'" O N N 124 A "C3'" C N S 125 A "O3'" O N N 126 A "C2'" C N R 127 A "O2'" O N N 128 A "C1'" C N R 129 A N9 N Y N 130 A C8 C Y N 131 A N7 N Y N 132 A C5 C Y N 133 A C6 C Y N 134 A N6 N N N 135 A N1 N Y N 136 A C2 C Y N 137 A N3 N Y N 138 A C4 C Y N 139 A HOP3 H N N 140 A HOP2 H N N 141 A "H5'" H N N 142 A "H5''" H N N 143 A "H4'" H N N 144 A "H3'" H N N 145 A "HO3'" H N N 146 A "H2'" H N N 147 A "HO2'" H N N 148 A "H1'" H N N 149 A H8 H N N 150 A H61 H N N 151 A H62 H N N 152 A H2 H N N 153 C OP3 O N N 154 C P P N N 155 C OP1 O N N 156 C OP2 O N N 157 C "O5'" O N N 158 C "C5'" C N N 159 C "C4'" C N R 160 C "O4'" O N N 161 C "C3'" C N S 162 C "O3'" O N N 163 C "C2'" C N R 164 C "O2'" O N N 165 C "C1'" C N R 166 C N1 N N N 167 C C2 C N N 168 C O2 O N N 169 C N3 N N N 170 C C4 C N N 171 C N4 N N N 172 C C5 C N N 173 C C6 C N N 174 C HOP3 H N N 175 C HOP2 H N N 176 C "H5'" H N N 177 C "H5''" H N N 178 C "H4'" H N N 179 C "H3'" H N N 180 C "HO3'" H N N 181 C "H2'" H N N 182 C "HO2'" H N N 183 C "H1'" H N N 184 C H41 H N N 185 C H42 H N N 186 C H5 H N N 187 C H6 H N N 188 G OP3 O N N 189 G P P N N 190 G OP1 O N N 191 G OP2 O N N 192 G "O5'" O N N 193 G "C5'" C N N 194 G "C4'" C N R 195 G "O4'" O N N 196 G "C3'" C N S 197 G "O3'" O N N 198 G "C2'" C N R 199 G "O2'" O N N 200 G "C1'" C N R 201 G N9 N Y N 202 G C8 C Y N 203 G N7 N Y N 204 G C5 C Y N 205 G C6 C N N 206 G O6 O N N 207 G N1 N N N 208 G C2 C N N 209 G N2 N N N 210 G N3 N N N 211 G C4 C Y N 212 G HOP3 H N N 213 G HOP2 H N N 214 G "H5'" H N N 215 G "H5''" H N N 216 G "H4'" H N N 217 G "H3'" H N N 218 G "HO3'" H N N 219 G "H2'" H N N 220 G "HO2'" H N N 221 G "H1'" H N N 222 G H8 H N N 223 G H1 H N N 224 G H21 H N N 225 G H22 H N N 226 H2U P P N N 227 H2U OP1 O N N 228 H2U OP2 O N N 229 H2U OP3 O N N 230 H2U "O5'" O N N 231 H2U "C5'" C N N 232 H2U "C4'" C N R 233 H2U "O4'" O N N 234 H2U "C3'" C N S 235 H2U "O3'" O N N 236 H2U "C1'" C N R 237 H2U "C2'" C N R 238 H2U "O2'" O N N 239 H2U N1 N N N 240 H2U C2 C N N 241 H2U O2 O N N 242 H2U N3 N N N 243 H2U C4 C N N 244 H2U O4 O N N 245 H2U C5 C N N 246 H2U C6 C N N 247 H2U HOP2 H N N 248 H2U HOP3 H N N 249 H2U "H5'" H N N 250 H2U "H5''" H N N 251 H2U "H4'" H N N 252 H2U "H3'" H N N 253 H2U "HO3'" H N N 254 H2U "H1'" H N N 255 H2U "H2'" H N N 256 H2U "HO2'" H N N 257 H2U HN3 H N N 258 H2U H51 H N N 259 H2U H52 H N N 260 H2U H61 H N N 261 H2U H62 H N N 262 HOH O O N N 263 HOH H1 H N N 264 HOH H2 H N N 265 MG MG MG N N 266 PSU N1 N N N 267 PSU C2 C N N 268 PSU N3 N N N 269 PSU C4 C N N 270 PSU C5 C N N 271 PSU C6 C N N 272 PSU O2 O N N 273 PSU O4 O N N 274 PSU "C1'" C N S 275 PSU "C2'" C N R 276 PSU "O2'" O N N 277 PSU "C3'" C N S 278 PSU "C4'" C N R 279 PSU "O3'" O N N 280 PSU "O4'" O N N 281 PSU "C5'" C N N 282 PSU "O5'" O N N 283 PSU P P N N 284 PSU OP1 O N N 285 PSU OP2 O N N 286 PSU OP3 O N N 287 PSU HN1 H N N 288 PSU HN3 H N N 289 PSU H6 H N N 290 PSU "H1'" H N N 291 PSU "H2'" H N N 292 PSU "HO2'" H N N 293 PSU "H3'" H N N 294 PSU "H4'" H N N 295 PSU "HO3'" H N N 296 PSU "H5'" H N N 297 PSU "H5''" H N N 298 PSU HOP2 H N N 299 PSU HOP3 H N N 300 SPM N1 N N N 301 SPM C2 C N N 302 SPM C3 C N N 303 SPM C4 C N N 304 SPM N5 N N N 305 SPM C6 C N N 306 SPM C7 C N N 307 SPM C8 C N N 308 SPM C9 C N N 309 SPM N10 N N N 310 SPM C11 C N N 311 SPM C12 C N N 312 SPM C13 C N N 313 SPM N14 N N N 314 SPM HN11 H N N 315 SPM HN12 H N N 316 SPM H21 H N N 317 SPM H22 H N N 318 SPM H31 H N N 319 SPM H32 H N N 320 SPM H41 H N N 321 SPM H42 H N N 322 SPM HN5 H N N 323 SPM H61 H N N 324 SPM H62 H N N 325 SPM H71 H N N 326 SPM H72 H N N 327 SPM H81 H N N 328 SPM H82 H N N 329 SPM H91 H N N 330 SPM H92 H N N 331 SPM HN0 H N N 332 SPM H111 H N N 333 SPM H112 H N N 334 SPM H121 H N N 335 SPM H122 H N N 336 SPM H131 H N N 337 SPM H132 H N N 338 SPM HN41 H N N 339 SPM HN42 H N N 340 U OP3 O N N 341 U P P N N 342 U OP1 O N N 343 U OP2 O N N 344 U "O5'" O N N 345 U "C5'" C N N 346 U "C4'" C N R 347 U "O4'" O N N 348 U "C3'" C N S 349 U "O3'" O N N 350 U "C2'" C N R 351 U "O2'" O N N 352 U "C1'" C N R 353 U N1 N N N 354 U C2 C N N 355 U O2 O N N 356 U N3 N N N 357 U C4 C N N 358 U O4 O N N 359 U C5 C N N 360 U C6 C N N 361 U HOP3 H N N 362 U HOP2 H N N 363 U "H5'" H N N 364 U "H5''" H N N 365 U "H4'" H N N 366 U "H3'" H N N 367 U "HO3'" H N N 368 U "H2'" H N N 369 U "HO2'" H N N 370 U "H1'" H N N 371 U H3 H N N 372 U H5 H N N 373 U H6 H N N 374 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1MG P OP1 doub N N 1 1MG P OP2 sing N N 2 1MG P OP3 sing N N 3 1MG P "O5'" sing N N 4 1MG OP2 HOP2 sing N N 5 1MG OP3 HOP3 sing N N 6 1MG "O5'" "C5'" sing N N 7 1MG "C5'" "C4'" sing N N 8 1MG "C5'" "H5'" sing N N 9 1MG "C5'" "H5''" sing N N 10 1MG "C4'" "O4'" sing N N 11 1MG "C4'" "C3'" sing N N 12 1MG "C4'" "H4'" sing N N 13 1MG "O4'" "C1'" sing N N 14 1MG "C3'" "O3'" sing N N 15 1MG "C3'" "C2'" sing N N 16 1MG "C3'" "H3'" sing N N 17 1MG "O3'" "HO3'" sing N N 18 1MG "C2'" "O2'" sing N N 19 1MG "C2'" "C1'" sing N N 20 1MG "C2'" "H2'" sing N N 21 1MG "O2'" "HO2'" sing N N 22 1MG "C1'" N9 sing N N 23 1MG "C1'" "H1'" sing N N 24 1MG N9 C8 sing Y N 25 1MG N9 C4 sing Y N 26 1MG C8 N7 doub Y N 27 1MG C8 H8 sing N N 28 1MG N7 C5 sing Y N 29 1MG C5 C6 sing N N 30 1MG C5 C4 doub Y N 31 1MG C6 O6 doub N N 32 1MG C6 N1 sing N N 33 1MG N1 CM1 sing N N 34 1MG N1 C2 sing N N 35 1MG CM1 HM11 sing N N 36 1MG CM1 HM12 sing N N 37 1MG CM1 HM13 sing N N 38 1MG C2 N2 sing N N 39 1MG C2 N3 doub N N 40 1MG N2 HN21 sing N N 41 1MG N2 HN22 sing N N 42 1MG N3 C4 sing N N 43 5MC P OP1 doub N N 44 5MC P OP2 sing N N 45 5MC P OP3 sing N N 46 5MC P "O5'" sing N N 47 5MC OP2 HOP2 sing N N 48 5MC OP3 HOP3 sing N N 49 5MC "O5'" "C5'" sing N N 50 5MC "C5'" "C4'" sing N N 51 5MC "C5'" "H5'" sing N N 52 5MC "C5'" "H5''" sing N N 53 5MC "C4'" "O4'" sing N N 54 5MC "C4'" "C3'" sing N N 55 5MC "C4'" "H4'" sing N N 56 5MC "O4'" "C1'" sing N N 57 5MC "C3'" "O3'" sing N N 58 5MC "C3'" "C2'" sing N N 59 5MC "C3'" "H3'" sing N N 60 5MC "O3'" "HO3'" sing N N 61 5MC "C2'" "O2'" sing N N 62 5MC "C2'" "C1'" sing N N 63 5MC "C2'" "H2'" sing N N 64 5MC "O2'" "HO2'" sing N N 65 5MC "C1'" N1 sing N N 66 5MC "C1'" "H1'" sing N N 67 5MC N1 C2 sing N N 68 5MC N1 C6 sing N N 69 5MC C2 O2 doub N N 70 5MC C2 N3 sing N N 71 5MC N3 C4 doub N N 72 5MC C4 N4 sing N N 73 5MC C4 C5 sing N N 74 5MC N4 HN41 sing N N 75 5MC N4 HN42 sing N N 76 5MC C5 C6 doub N N 77 5MC C5 CM5 sing N N 78 5MC C6 H6 sing N N 79 5MC CM5 HM51 sing N N 80 5MC CM5 HM52 sing N N 81 5MC CM5 HM53 sing N N 82 5MU N1 C2 sing N N 83 5MU N1 C6 sing N N 84 5MU N1 "C1'" sing N N 85 5MU C2 N3 sing N N 86 5MU C2 O2 doub N N 87 5MU N3 C4 sing N N 88 5MU N3 HN3 sing N N 89 5MU C4 C5 sing N N 90 5MU C4 O4 doub N N 91 5MU C5 C5M sing N N 92 5MU C5 C6 doub N N 93 5MU C5M H71 sing N N 94 5MU C5M H72 sing N N 95 5MU C5M H73 sing N N 96 5MU C6 H6 sing N N 97 5MU "C1'" "C2'" sing N N 98 5MU "C1'" "O4'" sing N N 99 5MU "C1'" "H1'" sing N N 100 5MU "C2'" "O2'" sing N N 101 5MU "C2'" "C3'" sing N N 102 5MU "C2'" "H2'" sing N N 103 5MU "O2'" "HO2'" sing N N 104 5MU "C3'" "C4'" sing N N 105 5MU "C3'" "O3'" sing N N 106 5MU "C3'" "H3'" sing N N 107 5MU "C4'" "O4'" sing N N 108 5MU "C4'" "C5'" sing N N 109 5MU "C4'" "H4'" sing N N 110 5MU "O3'" "HO3'" sing N N 111 5MU "C5'" "O5'" sing N N 112 5MU "C5'" "H5'" sing N N 113 5MU "C5'" "H5''" sing N N 114 5MU "O5'" P sing N N 115 5MU P OP1 doub N N 116 5MU P OP2 sing N N 117 5MU P OP3 sing N N 118 5MU OP2 HOP2 sing N N 119 5MU OP3 HOP3 sing N N 120 A OP3 P sing N N 121 A OP3 HOP3 sing N N 122 A P OP1 doub N N 123 A P OP2 sing N N 124 A P "O5'" sing N N 125 A OP2 HOP2 sing N N 126 A "O5'" "C5'" sing N N 127 A "C5'" "C4'" sing N N 128 A "C5'" "H5'" sing N N 129 A "C5'" "H5''" sing N N 130 A "C4'" "O4'" sing N N 131 A "C4'" "C3'" sing N N 132 A "C4'" "H4'" sing N N 133 A "O4'" "C1'" sing N N 134 A "C3'" "O3'" sing N N 135 A "C3'" "C2'" sing N N 136 A "C3'" "H3'" sing N N 137 A "O3'" "HO3'" sing N N 138 A "C2'" "O2'" sing N N 139 A "C2'" "C1'" sing N N 140 A "C2'" "H2'" sing N N 141 A "O2'" "HO2'" sing N N 142 A "C1'" N9 sing N N 143 A "C1'" "H1'" sing N N 144 A N9 C8 sing Y N 145 A N9 C4 sing Y N 146 A C8 N7 doub Y N 147 A C8 H8 sing N N 148 A N7 C5 sing Y N 149 A C5 C6 sing Y N 150 A C5 C4 doub Y N 151 A C6 N6 sing N N 152 A C6 N1 doub Y N 153 A N6 H61 sing N N 154 A N6 H62 sing N N 155 A N1 C2 sing Y N 156 A C2 N3 doub Y N 157 A C2 H2 sing N N 158 A N3 C4 sing Y N 159 C OP3 P sing N N 160 C OP3 HOP3 sing N N 161 C P OP1 doub N N 162 C P OP2 sing N N 163 C P "O5'" sing N N 164 C OP2 HOP2 sing N N 165 C "O5'" "C5'" sing N N 166 C "C5'" "C4'" sing N N 167 C "C5'" "H5'" sing N N 168 C "C5'" "H5''" sing N N 169 C "C4'" "O4'" sing N N 170 C "C4'" "C3'" sing N N 171 C "C4'" "H4'" sing N N 172 C "O4'" "C1'" sing N N 173 C "C3'" "O3'" sing N N 174 C "C3'" "C2'" sing N N 175 C "C3'" "H3'" sing N N 176 C "O3'" "HO3'" sing N N 177 C "C2'" "O2'" sing N N 178 C "C2'" "C1'" sing N N 179 C "C2'" "H2'" sing N N 180 C "O2'" "HO2'" sing N N 181 C "C1'" N1 sing N N 182 C "C1'" "H1'" sing N N 183 C N1 C2 sing N N 184 C N1 C6 sing N N 185 C C2 O2 doub N N 186 C C2 N3 sing N N 187 C N3 C4 doub N N 188 C C4 N4 sing N N 189 C C4 C5 sing N N 190 C N4 H41 sing N N 191 C N4 H42 sing N N 192 C C5 C6 doub N N 193 C C5 H5 sing N N 194 C C6 H6 sing N N 195 G OP3 P sing N N 196 G OP3 HOP3 sing N N 197 G P OP1 doub N N 198 G P OP2 sing N N 199 G P "O5'" sing N N 200 G OP2 HOP2 sing N N 201 G "O5'" "C5'" sing N N 202 G "C5'" "C4'" sing N N 203 G "C5'" "H5'" sing N N 204 G "C5'" "H5''" sing N N 205 G "C4'" "O4'" sing N N 206 G "C4'" "C3'" sing N N 207 G "C4'" "H4'" sing N N 208 G "O4'" "C1'" sing N N 209 G "C3'" "O3'" sing N N 210 G "C3'" "C2'" sing N N 211 G "C3'" "H3'" sing N N 212 G "O3'" "HO3'" sing N N 213 G "C2'" "O2'" sing N N 214 G "C2'" "C1'" sing N N 215 G "C2'" "H2'" sing N N 216 G "O2'" "HO2'" sing N N 217 G "C1'" N9 sing N N 218 G "C1'" "H1'" sing N N 219 G N9 C8 sing Y N 220 G N9 C4 sing Y N 221 G C8 N7 doub Y N 222 G C8 H8 sing N N 223 G N7 C5 sing Y N 224 G C5 C6 sing N N 225 G C5 C4 doub Y N 226 G C6 O6 doub N N 227 G C6 N1 sing N N 228 G N1 C2 sing N N 229 G N1 H1 sing N N 230 G C2 N2 sing N N 231 G C2 N3 doub N N 232 G N2 H21 sing N N 233 G N2 H22 sing N N 234 G N3 C4 sing N N 235 H2U P OP1 doub N N 236 H2U P OP2 sing N N 237 H2U P OP3 sing N N 238 H2U P "O5'" sing N N 239 H2U OP2 HOP2 sing N N 240 H2U OP3 HOP3 sing N N 241 H2U "O5'" "C5'" sing N N 242 H2U "C5'" "C4'" sing N N 243 H2U "C5'" "H5'" sing N N 244 H2U "C5'" "H5''" sing N N 245 H2U "C4'" "O4'" sing N N 246 H2U "C4'" "C3'" sing N N 247 H2U "C4'" "H4'" sing N N 248 H2U "O4'" "C1'" sing N N 249 H2U "C3'" "O3'" sing N N 250 H2U "C3'" "C2'" sing N N 251 H2U "C3'" "H3'" sing N N 252 H2U "O3'" "HO3'" sing N N 253 H2U "C1'" "C2'" sing N N 254 H2U "C1'" N1 sing N N 255 H2U "C1'" "H1'" sing N N 256 H2U "C2'" "O2'" sing N N 257 H2U "C2'" "H2'" sing N N 258 H2U "O2'" "HO2'" sing N N 259 H2U N1 C2 sing N N 260 H2U N1 C6 sing N N 261 H2U C2 O2 doub N N 262 H2U C2 N3 sing N N 263 H2U N3 C4 sing N N 264 H2U N3 HN3 sing N N 265 H2U C4 O4 doub N N 266 H2U C4 C5 sing N N 267 H2U C5 C6 sing N N 268 H2U C5 H51 sing N N 269 H2U C5 H52 sing N N 270 H2U C6 H61 sing N N 271 H2U C6 H62 sing N N 272 HOH O H1 sing N N 273 HOH O H2 sing N N 274 PSU N1 C2 sing N N 275 PSU N1 C6 sing N N 276 PSU N1 HN1 sing N N 277 PSU C2 N3 sing N N 278 PSU C2 O2 doub N N 279 PSU N3 C4 sing N N 280 PSU N3 HN3 sing N N 281 PSU C4 C5 sing N N 282 PSU C4 O4 doub N N 283 PSU C5 C6 doub N N 284 PSU C5 "C1'" sing N N 285 PSU C6 H6 sing N N 286 PSU "C1'" "C2'" sing N N 287 PSU "C1'" "O4'" sing N N 288 PSU "C1'" "H1'" sing N N 289 PSU "C2'" "O2'" sing N N 290 PSU "C2'" "C3'" sing N N 291 PSU "C2'" "H2'" sing N N 292 PSU "O2'" "HO2'" sing N N 293 PSU "C3'" "C4'" sing N N 294 PSU "C3'" "O3'" sing N N 295 PSU "C3'" "H3'" sing N N 296 PSU "C4'" "O4'" sing N N 297 PSU "C4'" "C5'" sing N N 298 PSU "C4'" "H4'" sing N N 299 PSU "O3'" "HO3'" sing N N 300 PSU "C5'" "O5'" sing N N 301 PSU "C5'" "H5'" sing N N 302 PSU "C5'" "H5''" sing N N 303 PSU "O5'" P sing N N 304 PSU P OP1 doub N N 305 PSU P OP2 sing N N 306 PSU P OP3 sing N N 307 PSU OP2 HOP2 sing N N 308 PSU OP3 HOP3 sing N N 309 SPM N1 C2 sing N N 310 SPM N1 HN11 sing N N 311 SPM N1 HN12 sing N N 312 SPM C2 C3 sing N N 313 SPM C2 H21 sing N N 314 SPM C2 H22 sing N N 315 SPM C3 C4 sing N N 316 SPM C3 H31 sing N N 317 SPM C3 H32 sing N N 318 SPM C4 N5 sing N N 319 SPM C4 H41 sing N N 320 SPM C4 H42 sing N N 321 SPM N5 C6 sing N N 322 SPM N5 HN5 sing N N 323 SPM C6 C7 sing N N 324 SPM C6 H61 sing N N 325 SPM C6 H62 sing N N 326 SPM C7 C8 sing N N 327 SPM C7 H71 sing N N 328 SPM C7 H72 sing N N 329 SPM C8 C9 sing N N 330 SPM C8 H81 sing N N 331 SPM C8 H82 sing N N 332 SPM C9 N10 sing N N 333 SPM C9 H91 sing N N 334 SPM C9 H92 sing N N 335 SPM N10 C11 sing N N 336 SPM N10 HN0 sing N N 337 SPM C11 C12 sing N N 338 SPM C11 H111 sing N N 339 SPM C11 H112 sing N N 340 SPM C12 C13 sing N N 341 SPM C12 H121 sing N N 342 SPM C12 H122 sing N N 343 SPM C13 N14 sing N N 344 SPM C13 H131 sing N N 345 SPM C13 H132 sing N N 346 SPM N14 HN41 sing N N 347 SPM N14 HN42 sing N N 348 U OP3 P sing N N 349 U OP3 HOP3 sing N N 350 U P OP1 doub N N 351 U P OP2 sing N N 352 U P "O5'" sing N N 353 U OP2 HOP2 sing N N 354 U "O5'" "C5'" sing N N 355 U "C5'" "C4'" sing N N 356 U "C5'" "H5'" sing N N 357 U "C5'" "H5''" sing N N 358 U "C4'" "O4'" sing N N 359 U "C4'" "C3'" sing N N 360 U "C4'" "H4'" sing N N 361 U "O4'" "C1'" sing N N 362 U "C3'" "O3'" sing N N 363 U "C3'" "C2'" sing N N 364 U "C3'" "H3'" sing N N 365 U "O3'" "HO3'" sing N N 366 U "C2'" "O2'" sing N N 367 U "C2'" "C1'" sing N N 368 U "C2'" "H2'" sing N N 369 U "O2'" "HO2'" sing N N 370 U "C1'" N1 sing N N 371 U "C1'" "H1'" sing N N 372 U N1 C2 sing N N 373 U N1 C6 sing N N 374 U C2 O2 doub N N 375 U C2 N3 sing N N 376 U N3 C4 sing N N 377 U N3 H3 sing N N 378 U C4 O4 doub N N 379 U C4 C5 sing N N 380 U C5 C6 doub N N 381 U C5 H5 sing N N 382 U C6 H6 sing N N 383 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2TRA 'double helix' 2TRA 'a-form double helix' 2TRA 'parallel strands' 2TRA 'hairpin loop' 2TRA 'mismatched base pair' 2TRA 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 A A 71 1_555 0.438 -0.235 -0.215 12.574 1.661 6.382 1 A_U1:A71_A A 1 ? A 71 ? 20 1 1 A C 2 1_555 A G 70 1_555 0.552 -0.050 0.078 5.493 -4.604 -0.328 2 A_C2:G70_A A 2 ? A 70 ? 19 1 1 A C 3 1_555 A G 69 1_555 -0.590 -0.030 -0.281 8.990 6.385 -0.055 3 A_C3:G69_A A 3 ? A 69 ? 19 1 1 A G 4 1_555 A C 68 1_555 0.259 0.047 0.043 2.725 -4.422 7.410 4 A_G4:C68_A A 4 ? A 68 ? 19 1 1 A U 5 1_555 A G 67 1_555 2.196 -0.474 -0.229 -1.476 1.994 4.469 5 A_U5:G67_A A 5 ? A 67 ? 28 1 1 A G 6 1_555 A C 66 1_555 -0.133 -0.157 0.242 0.254 -10.287 -1.120 6 A_G6:C66_A A 6 ? A 66 ? 19 1 1 A A 7 1_555 A U 65 1_555 0.151 0.094 0.401 -2.216 -11.513 -10.302 7 A_A7:U65_A A 7 ? A 65 ? 20 1 1 A 5MC 48 1_555 A G 64 1_555 0.073 -0.153 0.230 10.014 -5.766 -3.892 8 A_5MC48:G64_A A 48 ? A 64 ? 19 1 1 A G 49 1_555 A C 63 1_555 -0.164 -0.155 -0.273 6.645 -2.415 1.910 9 A_G49:C63_A A 49 ? A 63 ? 19 1 1 A G 50 1_555 A C 62 1_555 -0.149 -0.214 -0.503 -4.536 2.017 -0.701 10 A_G50:C62_A A 50 ? A 62 ? 19 1 1 A G 51 1_555 A C 61 1_555 -0.046 -0.126 -0.081 4.190 -3.177 -0.488 11 A_G51:C61_A A 51 ? A 61 ? 19 1 1 A G 52 1_555 A C 60 1_555 -0.134 -0.140 -0.013 -6.927 6.425 -2.189 12 A_G52:C60_A A 52 ? A 60 ? 19 1 1 A 5MU 53 1_555 A A 57 1_555 4.562 -2.364 0.358 8.327 12.392 -93.764 13 A_5MU53:A57_A A 53 ? A 57 ? 24 4 1 A PSU 54 1_555 A G 17 1_555 0.200 -5.838 0.479 32.638 6.876 -106.615 14 A_PSU54:G17_A A 54 ? A 17 ? ? 2 1 A G 39 1_555 A C 31 1_555 -0.365 -0.135 -0.101 6.318 -15.428 -0.134 15 A_G39:C31_A A 39 ? A 31 ? 19 1 1 A U 40 1_555 A G 30 1_555 1.801 -0.332 0.207 -6.300 -12.792 -2.242 16 A_U40:G30_A A 40 ? A 30 ? 28 1 1 A G 41 1_555 A C 29 1_555 -0.525 -0.292 0.492 4.409 -8.694 0.474 17 A_G41:C29_A A 41 ? A 29 ? 19 1 1 A C 42 1_555 A G 28 1_555 0.105 -0.213 -0.043 2.919 -7.842 0.716 18 A_C42:G28_A A 42 ? A 28 ? 19 1 1 A C 43 1_555 A G 27 1_555 -0.581 -0.143 0.410 -1.535 -11.288 -4.033 19 A_C43:G27_A A 43 ? A 27 ? 19 1 1 A A 44 1_555 A G 26 1_555 0.012 1.425 -0.192 -18.407 -14.554 -20.697 20 A_A44:G26_A A 44 ? A 26 ? 8 ? 1 A G 10 1_555 A U 25 1_555 -2.338 -0.558 0.323 4.945 4.263 -1.994 21 A_G10:U25_A A 10 ? A 25 ? 28 ? 1 A U 11 1_555 A A 24 1_555 0.057 -0.147 0.352 -1.521 -13.459 -1.146 22 A_U11:A24_A A 11 ? A 24 ? 20 1 1 A U 12 1_555 A A 23 1_555 -0.111 -0.007 0.100 -6.231 1.193 -6.756 23 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A PSU 13 1_555 A G 22 1_555 1.459 -0.508 0.427 0.940 -11.931 -2.501 24 A_PSU13:G22_A A 13 ? A 22 ? 27 1 1 A A 14 1_555 A U 8 1_555 -4.057 -2.028 0.577 2.815 6.687 -97.097 25 A_A14:U8_A A 14 ? A 8 ? 24 4 1 A A 15 1_555 A U 47 1_555 0.294 0.894 -0.716 3.993 -1.356 168.947 26 A_A15:U47_A A 15 ? A 47 ? 21 2 1 A G 18 1_555 A C 55 1_555 0.061 -0.044 -0.114 -5.147 -24.495 -0.755 27 A_G18:C55_A A 18 ? A 55 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 A A 71 1_555 A C 2 1_555 A G 70 1_555 -0.209 -1.503 3.045 -0.272 7.341 34.303 -3.471 0.311 2.678 12.273 0.455 35.058 1 AA_U1C2:G70A71_AA A 1 ? A 71 ? A 2 ? A 70 ? 1 A C 2 1_555 A G 70 1_555 A C 3 1_555 A G 69 1_555 -0.164 -1.868 3.337 1.893 8.978 28.163 -5.432 0.695 2.613 17.860 -3.766 29.591 2 AA_C2C3:G69G70_AA A 2 ? A 70 ? A 3 ? A 69 ? 1 A C 3 1_555 A G 69 1_555 A G 4 1_555 A C 68 1_555 0.521 -1.543 3.329 3.254 13.169 33.415 -4.262 -0.407 2.595 21.818 -5.391 35.991 3 AA_C3G4:C68G69_AA A 3 ? A 69 ? A 4 ? A 68 ? 1 A G 4 1_555 A C 68 1_555 A U 5 1_555 A G 67 1_555 0.087 -1.557 3.596 0.953 0.882 39.171 -2.436 -0.004 3.563 1.315 -1.421 39.191 4 AA_G4U5:G67C68_AA A 4 ? A 68 ? A 5 ? A 67 ? 1 A U 5 1_555 A G 67 1_555 A G 6 1_555 A C 66 1_555 0.325 -1.998 2.776 4.322 7.150 21.448 -6.929 0.344 2.038 18.339 -11.086 23.000 5 AA_U5G6:C66G67_AA A 5 ? A 67 ? A 6 ? A 66 ? 1 A G 6 1_555 A C 66 1_555 A A 7 1_555 A U 65 1_555 -0.364 -0.867 3.513 3.435 22.202 34.342 -3.696 0.901 2.485 33.531 -5.187 40.852 6 AA_G6A7:U65C66_AA A 6 ? A 66 ? A 7 ? A 65 ? 1 A A 7 1_555 A U 65 1_555 A 5MC 48 1_555 A G 64 1_555 0.197 -1.649 2.867 1.568 6.076 31.869 -3.837 -0.124 2.524 10.934 -2.821 32.466 7 AA_A75MC48:G64U65_AA A 7 ? A 65 ? A 48 ? A 64 ? 1 A 5MC 48 1_555 A G 64 1_555 A G 49 1_555 A C 63 1_555 -0.280 -1.653 3.023 -0.256 14.014 36.849 -3.851 0.391 2.272 21.249 0.388 39.338 8 AA_5MC48G49:C63G64_AA A 48 ? A 64 ? A 49 ? A 63 ? 1 A G 49 1_555 A C 63 1_555 A G 50 1_555 A C 62 1_555 -0.582 -1.507 3.738 1.286 12.197 29.883 -5.000 1.289 2.891 22.497 -2.372 32.248 9 AA_G49G50:C62C63_AA A 49 ? A 63 ? A 50 ? A 62 ? 1 A G 50 1_555 A C 62 1_555 A G 51 1_555 A C 61 1_555 0.297 -1.692 3.231 -6.243 4.896 36.638 -3.244 -1.239 2.901 7.677 9.790 37.459 10 AA_G50G51:C61C62_AA A 50 ? A 62 ? A 51 ? A 61 ? 1 A G 51 1_555 A C 61 1_555 A G 52 1_555 A C 60 1_555 0.161 -2.783 3.298 2.202 -2.436 25.386 -5.556 0.293 3.546 -5.514 -4.983 25.594 11 AA_G51G52:C60C61_AA A 51 ? A 61 ? A 52 ? A 60 ? 1 A G 52 1_555 A C 60 1_555 A 5MU 53 1_555 A A 57 1_555 -2.577 -2.181 3.154 2.577 -2.203 90.876 -1.488 1.857 3.137 -1.545 -1.808 90.925 12 AA_G525MU53:A57C60_AA A 52 ? A 60 ? A 53 ? A 57 ? 1 A 5MU 53 1_555 A A 57 1_555 A PSU 54 1_555 A G 17 1_555 0.603 -1.401 3.433 15.415 -0.923 44.685 -1.669 0.620 3.476 -1.173 -19.595 47.148 13 AA_5MU53PSU54:G17A57_AA A 53 ? A 57 ? A 54 ? A 17 ? 1 A G 39 1_555 A C 31 1_555 A U 40 1_555 A G 30 1_555 0.051 -1.318 3.770 -2.044 -0.451 41.078 -1.820 -0.328 3.777 -0.642 2.910 41.129 14 AA_G39U40:G30C31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A U 40 1_555 A G 30 1_555 A G 41 1_555 A C 29 1_555 0.066 -2.528 2.825 -2.140 6.356 17.601 -10.170 -1.024 1.788 19.861 6.688 18.826 15 AA_U40G41:C29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A G 41 1_555 A C 29 1_555 A C 42 1_555 A G 28 1_555 -0.992 -1.309 3.161 2.708 4.179 38.689 -2.433 1.792 2.936 6.276 -4.067 38.996 16 AA_G41C42:G28C29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A C 42 1_555 A G 28 1_555 A C 43 1_555 A G 27 1_555 0.189 -1.734 3.508 -0.717 2.311 34.517 -3.292 -0.435 3.383 3.888 1.206 34.600 17 AA_C42C43:G27G28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A C 43 1_555 A G 27 1_555 A A 44 1_555 A G 26 1_555 -0.640 -1.787 3.357 7.903 13.274 32.377 -4.639 2.071 2.264 22.292 -13.272 35.784 18 AA_C43A44:G26G27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A A 44 1_555 A G 26 1_555 A G 10 1_555 A U 25 1_555 -2.847 -3.186 2.746 5.033 15.002 53.379 -4.017 3.257 1.612 16.300 -5.469 55.510 19 AA_A44G10:U25G26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A G 10 1_555 A U 25 1_555 A U 11 1_555 A A 24 1_555 -0.605 -1.450 3.370 -2.286 6.474 46.988 -2.328 0.566 3.179 8.069 2.849 47.459 20 AA_G10U11:A24U25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A U 11 1_555 A A 24 1_555 A U 12 1_555 A A 23 1_555 -0.801 -1.295 3.404 -3.008 8.996 33.982 -3.479 0.876 3.032 15.032 5.026 35.243 21 AA_U11U12:A23A24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 12 1_555 A A 23 1_555 A PSU 13 1_555 A G 22 1_555 0.651 -2.654 3.167 -2.717 -3.295 22.460 -5.504 -2.626 3.414 -8.363 6.896 22.858 22 AA_U12PSU13:G22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A PSU 13 1_555 A G 22 1_555 A A 14 1_555 A U 8 1_555 -0.741 -1.427 3.147 3.826 -10.554 76.186 -0.847 0.705 3.258 -8.509 -3.084 76.885 23 AA_PSU13A14:U8G22_AA A 13 ? A 22 ? A 14 ? A 8 ? 1 A A 14 1_555 A U 8 1_555 A A 15 1_555 A U 47 1_555 1.156 -2.005 3.781 5.983 18.606 -91.121 0.963 0.935 3.985 -12.911 4.151 -92.741 24 AA_A14A15:U47U8_AA A 14 ? A 8 ? A 15 ? A 47 ? # _atom_sites.entry_id 2TRA _atom_sites.fract_transf_matrix[1][1] 0.016260 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014815 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000070 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006689 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_