data_2UV5 # _entry.id 2UV5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2UV5 PDBE EBI-31839 WWPDB D_1290031839 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2UV4 unspecified 'CRYSTAL STRUCTURE OF A CBS DOMAIN PAIR FROM THE REGULATORY GAMMA1 SUBUNIT OF HUMAN AMPK IN COMPLEX WITH AMP' PDB 2UV6 unspecified 'CRYSTAL STRUCTURE OF A CBS DOMAIN PAIR FROM THE REGULATORY GAMMA1 SUBUNIT OF HUMAN AMPK IN COMPLEX WITH AMP' PDB 2UV7 unspecified 'CRYSTAL STRUCTURE OF A CBS DOMAIN PAIR FROM THE REGULATORY GAMMA1 SUBUNIT OF HUMAN AMPK IN COMPLEX WITH AMP' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2UV5 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-03-09 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Day, P.' 1 'Sharff, A.' 2 'Parra, L.' 3 'Cleasby, A.' 4 'Williams, M.' 5 'Horer, S.' 6 'Nar, H.' 7 'Redemann, N.' 8 'Tickle, I.' 9 'Yon, J.' 10 # _citation.id primary _citation.title 'Structure of a Cbs-Domain Pair from the Regulatory Gamma1 Subunit of Human Ampk in Complex with AMP and Zmp.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 63 _citation.page_first 587 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17452784 _citation.pdbx_database_id_DOI 10.1107/S0907444907009110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Day, P.' 1 primary 'Sharff, A.' 2 primary 'Parra, L.' 3 primary 'Cleasby, A.' 4 primary 'Williams, M.' 5 primary 'Horer, S.' 6 primary 'Nar, H.' 7 primary 'Redemann, N.' 8 primary 'Tickle, I.' 9 primary 'Yon, J.' 10 # _cell.entry_id 2UV5 _cell.length_a 66.056 _cell.length_b 43.885 _cell.length_c 55.798 _cell.angle_alpha 90.00 _cell.angle_beta 118.18 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2UV5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1 ; 17278.875 1 ? ? 'CBS 3 AND 4 FRAGMENT, RESIDUES 182-325' ? 2 non-polymer syn 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' 338.211 1 ? ? ? ? 3 water nat water 18.015 258 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AMPK GAMMA-1 CHAIN, AMPKG, AMPK GAMMA1 CHAIN CBS DOMAINS 3 AND 4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK TYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALVLT ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK TYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALVLT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 GLU n 1 10 PHE n 1 11 PRO n 1 12 LYS n 1 13 PRO n 1 14 GLU n 1 15 PHE n 1 16 MET n 1 17 SER n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 GLU n 1 23 LEU n 1 24 GLN n 1 25 ILE n 1 26 GLY n 1 27 THR n 1 28 TYR n 1 29 ALA n 1 30 ASN n 1 31 ILE n 1 32 ALA n 1 33 MET n 1 34 VAL n 1 35 ARG n 1 36 THR n 1 37 THR n 1 38 THR n 1 39 PRO n 1 40 VAL n 1 41 TYR n 1 42 VAL n 1 43 ALA n 1 44 LEU n 1 45 GLY n 1 46 ILE n 1 47 PHE n 1 48 VAL n 1 49 GLN n 1 50 HIS n 1 51 ARG n 1 52 VAL n 1 53 SER n 1 54 ALA n 1 55 LEU n 1 56 PRO n 1 57 VAL n 1 58 VAL n 1 59 ASP n 1 60 GLU n 1 61 LYS n 1 62 GLY n 1 63 ARG n 1 64 VAL n 1 65 VAL n 1 66 ASP n 1 67 ILE n 1 68 TYR n 1 69 SER n 1 70 LYS n 1 71 PHE n 1 72 ASP n 1 73 VAL n 1 74 ILE n 1 75 ASN n 1 76 LEU n 1 77 ALA n 1 78 ALA n 1 79 GLU n 1 80 LYS n 1 81 THR n 1 82 TYR n 1 83 ASN n 1 84 ASN n 1 85 LEU n 1 86 ASP n 1 87 VAL n 1 88 SER n 1 89 VAL n 1 90 THR n 1 91 LYS n 1 92 ALA n 1 93 LEU n 1 94 GLN n 1 95 HIS n 1 96 ARG n 1 97 SER n 1 98 HIS n 1 99 TYR n 1 100 PHE n 1 101 GLU n 1 102 GLY n 1 103 VAL n 1 104 LEU n 1 105 LYS n 1 106 CYS n 1 107 TYR n 1 108 LEU n 1 109 HIS n 1 110 GLU n 1 111 THR n 1 112 LEU n 1 113 GLU n 1 114 THR n 1 115 ILE n 1 116 ILE n 1 117 ASN n 1 118 ARG n 1 119 LEU n 1 120 VAL n 1 121 GLU n 1 122 ALA n 1 123 GLU n 1 124 VAL n 1 125 HIS n 1 126 ARG n 1 127 LEU n 1 128 VAL n 1 129 VAL n 1 130 VAL n 1 131 ASP n 1 132 GLU n 1 133 ASN n 1 134 ASP n 1 135 VAL n 1 136 VAL n 1 137 LYS n 1 138 GLY n 1 139 ILE n 1 140 VAL n 1 141 SER n 1 142 LEU n 1 143 SER n 1 144 ASP n 1 145 ILE n 1 146 LEU n 1 147 GLN n 1 148 ALA n 1 149 LEU n 1 150 VAL n 1 151 LEU n 1 152 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2UV5 1 ? ? 2UV5 ? 2 UNP AAKG1_HUMAN 1 ? ? P54619 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2UV5 A 1 ? 8 ? 2UV5 -8 ? -1 ? -8 -1 2 2 2UV5 A 9 ? 152 ? P54619 182 ? 325 ? 182 325 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMZ non-polymer . 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' AICAR 'C9 H15 N4 O8 P' 338.211 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2UV5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_percent_sol 30.91 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 8.00' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU IMAGE PLATE' _diffrn_detector.pdbx_collection_date 2004-08-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2UV5 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.000 _reflns.d_resolution_high 1.510 _reflns.number_obs 15986 _reflns.number_all ? _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.06000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.5000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.500 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2UV5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14868 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.34 _refine.ls_d_res_high 1.69 _refine.ls_percent_reflns_obs 98.0 _refine.ls_R_factor_obs 0.171 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.168 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 789 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 15.55 _refine.aniso_B[1][1] 0.28000 _refine.aniso_B[2][2] -0.55000 _refine.aniso_B[3][3] 0.56000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.31000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.114 _refine.pdbx_overall_ESU_R_Free 0.121 _refine.overall_SU_ML 0.091 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.844 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1139 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 258 _refine_hist.number_atoms_total 1419 _refine_hist.d_res_high 1.69 _refine_hist.d_res_low 25.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 1181 'X-RAY DIFFRACTION' ? r_bond_other_d 0.009 0.020 ? 753 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.373 1.970 ? 1608 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.969 3.000 ? 1851 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.403 5.000 ? 141 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.527 24.528 ? 53 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.634 15.211 ? 213 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.848 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.087 0.200 ? 196 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1272 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 222 'X-RAY DIFFRACTION' ? r_nbd_refined 0.245 0.200 ? 270 'X-RAY DIFFRACTION' ? r_nbd_other 0.196 0.200 ? 843 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.172 0.200 ? 592 'X-RAY DIFFRACTION' ? r_nbtor_other 0.085 0.200 ? 576 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.181 0.200 ? 50 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.103 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.182 0.200 ? 41 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.122 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.099 5.000 ? 713 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.127 6.000 ? 1167 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.116 6.000 ? 468 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 0.152 7.500 ? 441 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.69 _refine_ls_shell.d_res_low 1.73 _refine_ls_shell.number_reflns_R_work 955 _refine_ls_shell.R_factor_R_work 0.2870 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3710 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2UV5 _struct.title 'Crystal Structure of a CBS domain pair from the regulatory gamma1 subunit of human AMPK in complex with AMP' _struct.pdbx_descriptor ;5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2UV5 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, CBS DOMAIN, LIPID SYNTHESIS, FATTY ACID BIOSYNTHESIS, AMPK GAMMA1 SUBUNIT CBS 3 PLUS 4 AMP REGULATORY SUBUNIT.A' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 12 ? SER A 17 ? LYS A 185 SER A 190 1 ? 6 HELX_P HELX_P2 2 SER A 19 ? GLN A 24 ? SER A 192 GLN A 197 1 ? 6 HELX_P HELX_P3 3 PRO A 39 ? ARG A 51 ? PRO A 212 ARG A 224 1 ? 13 HELX_P HELX_P4 4 LYS A 70 ? GLU A 79 ? LYS A 243 GLU A 252 1 ? 10 HELX_P HELX_P5 5 VAL A 89 ? HIS A 95 ? VAL A 262 HIS A 268 5 ? 7 HELX_P HELX_P6 6 THR A 111 ? GLU A 123 ? THR A 284 GLU A 296 1 ? 13 HELX_P HELX_P7 7 LEU A 142 ? VAL A 150 ? LEU A 315 VAL A 323 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 10 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 183 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 11 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 184 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.52 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 34 ? ARG A 35 ? VAL A 207 ARG A 208 AA 2 ALA A 54 ? VAL A 58 ? ALA A 227 VAL A 231 AA 3 VAL A 64 ? SER A 69 ? VAL A 237 SER A 242 AB 1 LYS A 105 ? CYS A 106 ? LYS A 278 CYS A 279 AB 2 ARG A 126 ? VAL A 130 ? ARG A 299 VAL A 303 AB 3 VAL A 136 ? SER A 141 ? VAL A 309 SER A 314 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 34 ? N VAL A 207 O PRO A 56 ? O PRO A 229 AA 2 3 O VAL A 57 ? O VAL A 230 N VAL A 65 ? N VAL A 238 AB 1 2 N CYS A 106 ? N CYS A 279 O VAL A 128 ? O VAL A 301 AB 2 3 O VAL A 129 ? O VAL A 302 N LYS A 137 ? N LYS A 310 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 21 _struct_site.details 'BINDING SITE FOR RESIDUE AMZ A1324' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 THR A 27 ? THR A 200 . ? 1_555 ? 2 AC1 21 ILE A 31 ? ILE A 204 . ? 1_555 ? 3 AC1 21 ALA A 32 ? ALA A 205 . ? 1_555 ? 4 AC1 21 VAL A 52 ? VAL A 225 . ? 1_555 ? 5 AC1 21 SER A 53 ? SER A 226 . ? 1_555 ? 6 AC1 21 ALA A 54 ? ALA A 227 . ? 1_555 ? 7 AC1 21 ILE A 139 ? ILE A 312 . ? 1_555 ? 8 AC1 21 SER A 141 ? SER A 314 . ? 1_555 ? 9 AC1 21 SER A 143 ? SER A 316 . ? 1_555 ? 10 AC1 21 ASP A 144 ? ASP A 317 . ? 1_555 ? 11 AC1 21 HOH C . ? HOH A 2059 . ? 1_555 ? 12 AC1 21 HOH C . ? HOH A 2060 . ? 1_555 ? 13 AC1 21 HOH C . ? HOH A 2249 . ? 1_555 ? 14 AC1 21 HOH C . ? HOH A 2250 . ? 1_555 ? 15 AC1 21 HOH C . ? HOH A 2251 . ? 1_555 ? 16 AC1 21 HOH C . ? HOH A 2252 . ? 1_555 ? 17 AC1 21 HOH C . ? HOH A 2253 . ? 1_555 ? 18 AC1 21 HOH C . ? HOH A 2254 . ? 1_555 ? 19 AC1 21 HOH C . ? HOH A 2256 . ? 1_555 ? 20 AC1 21 HOH C . ? HOH A 2257 . ? 1_555 ? 21 AC1 21 HOH C . ? HOH A 2258 . ? 1_555 ? # _database_PDB_matrix.entry_id 2UV5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2UV5 _atom_sites.fract_transf_matrix[1][1] 0.015139 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008110 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022787 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020332 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -8 ? ? ? A . n A 1 2 ALA 2 -7 ? ? ? A . n A 1 3 HIS 3 -6 ? ? ? A . n A 1 4 HIS 4 -5 ? ? ? A . n A 1 5 HIS 5 -4 ? ? ? A . n A 1 6 HIS 6 -3 ? ? ? A . n A 1 7 HIS 7 -2 ? ? ? A . n A 1 8 HIS 8 -1 -1 HIS HIS A . n A 1 9 GLU 9 182 182 GLU GLU A . n A 1 10 PHE 10 183 183 PHE PHE A . n A 1 11 PRO 11 184 184 PRO PRO A . n A 1 12 LYS 12 185 185 LYS LYS A . n A 1 13 PRO 13 186 186 PRO PRO A . n A 1 14 GLU 14 187 187 GLU GLU A . n A 1 15 PHE 15 188 188 PHE PHE A . n A 1 16 MET 16 189 189 MET MET A . n A 1 17 SER 17 190 190 SER SER A . n A 1 18 LYS 18 191 191 LYS LYS A . n A 1 19 SER 19 192 192 SER SER A . n A 1 20 LEU 20 193 193 LEU LEU A . n A 1 21 GLU 21 194 194 GLU GLU A . n A 1 22 GLU 22 195 195 GLU GLU A . n A 1 23 LEU 23 196 196 LEU LEU A . n A 1 24 GLN 24 197 197 GLN GLN A . n A 1 25 ILE 25 198 198 ILE ILE A . n A 1 26 GLY 26 199 199 GLY GLY A . n A 1 27 THR 27 200 200 THR THR A . n A 1 28 TYR 28 201 201 TYR TYR A . n A 1 29 ALA 29 202 202 ALA ALA A . n A 1 30 ASN 30 203 203 ASN ASN A . n A 1 31 ILE 31 204 204 ILE ILE A . n A 1 32 ALA 32 205 205 ALA ALA A . n A 1 33 MET 33 206 206 MET MET A . n A 1 34 VAL 34 207 207 VAL VAL A . n A 1 35 ARG 35 208 208 ARG ARG A . n A 1 36 THR 36 209 209 THR THR A . n A 1 37 THR 37 210 210 THR THR A . n A 1 38 THR 38 211 211 THR THR A . n A 1 39 PRO 39 212 212 PRO PRO A . n A 1 40 VAL 40 213 213 VAL VAL A . n A 1 41 TYR 41 214 214 TYR TYR A . n A 1 42 VAL 42 215 215 VAL VAL A . n A 1 43 ALA 43 216 216 ALA ALA A . n A 1 44 LEU 44 217 217 LEU LEU A . n A 1 45 GLY 45 218 218 GLY GLY A . n A 1 46 ILE 46 219 219 ILE ILE A . n A 1 47 PHE 47 220 220 PHE PHE A . n A 1 48 VAL 48 221 221 VAL VAL A . n A 1 49 GLN 49 222 222 GLN GLN A . n A 1 50 HIS 50 223 223 HIS HIS A . n A 1 51 ARG 51 224 224 ARG ARG A . n A 1 52 VAL 52 225 225 VAL VAL A . n A 1 53 SER 53 226 226 SER SER A . n A 1 54 ALA 54 227 227 ALA ALA A . n A 1 55 LEU 55 228 228 LEU LEU A . n A 1 56 PRO 56 229 229 PRO PRO A . n A 1 57 VAL 57 230 230 VAL VAL A . n A 1 58 VAL 58 231 231 VAL VAL A . n A 1 59 ASP 59 232 232 ASP ASP A . n A 1 60 GLU 60 233 233 GLU GLU A . n A 1 61 LYS 61 234 234 LYS LYS A . n A 1 62 GLY 62 235 235 GLY GLY A . n A 1 63 ARG 63 236 236 ARG ARG A . n A 1 64 VAL 64 237 237 VAL VAL A . n A 1 65 VAL 65 238 238 VAL VAL A . n A 1 66 ASP 66 239 239 ASP ASP A . n A 1 67 ILE 67 240 240 ILE ILE A . n A 1 68 TYR 68 241 241 TYR TYR A . n A 1 69 SER 69 242 242 SER SER A . n A 1 70 LYS 70 243 243 LYS LYS A . n A 1 71 PHE 71 244 244 PHE PHE A . n A 1 72 ASP 72 245 245 ASP ASP A . n A 1 73 VAL 73 246 246 VAL VAL A . n A 1 74 ILE 74 247 247 ILE ILE A . n A 1 75 ASN 75 248 248 ASN ASN A . n A 1 76 LEU 76 249 249 LEU LEU A . n A 1 77 ALA 77 250 250 ALA ALA A . n A 1 78 ALA 78 251 251 ALA ALA A . n A 1 79 GLU 79 252 252 GLU GLU A . n A 1 80 LYS 80 253 253 LYS LYS A . n A 1 81 THR 81 254 254 THR THR A . n A 1 82 TYR 82 255 255 TYR TYR A . n A 1 83 ASN 83 256 256 ASN ASN A . n A 1 84 ASN 84 257 257 ASN ASN A . n A 1 85 LEU 85 258 258 LEU LEU A . n A 1 86 ASP 86 259 259 ASP ASP A . n A 1 87 VAL 87 260 260 VAL VAL A . n A 1 88 SER 88 261 261 SER SER A . n A 1 89 VAL 89 262 262 VAL VAL A . n A 1 90 THR 90 263 263 THR THR A . n A 1 91 LYS 91 264 264 LYS LYS A . n A 1 92 ALA 92 265 265 ALA ALA A . n A 1 93 LEU 93 266 266 LEU LEU A . n A 1 94 GLN 94 267 267 GLN GLN A . n A 1 95 HIS 95 268 268 HIS HIS A . n A 1 96 ARG 96 269 269 ARG ARG A . n A 1 97 SER 97 270 270 SER SER A . n A 1 98 HIS 98 271 271 HIS HIS A . n A 1 99 TYR 99 272 272 TYR TYR A . n A 1 100 PHE 100 273 273 PHE PHE A . n A 1 101 GLU 101 274 274 GLU GLU A . n A 1 102 GLY 102 275 275 GLY GLY A . n A 1 103 VAL 103 276 276 VAL VAL A . n A 1 104 LEU 104 277 277 LEU LEU A . n A 1 105 LYS 105 278 278 LYS LYS A . n A 1 106 CYS 106 279 279 CYS CYS A . n A 1 107 TYR 107 280 280 TYR TYR A . n A 1 108 LEU 108 281 281 LEU LEU A . n A 1 109 HIS 109 282 282 HIS HIS A . n A 1 110 GLU 110 283 283 GLU GLU A . n A 1 111 THR 111 284 284 THR THR A . n A 1 112 LEU 112 285 285 LEU LEU A . n A 1 113 GLU 113 286 286 GLU GLU A . n A 1 114 THR 114 287 287 THR THR A . n A 1 115 ILE 115 288 288 ILE ILE A . n A 1 116 ILE 116 289 289 ILE ILE A . n A 1 117 ASN 117 290 290 ASN ASN A . n A 1 118 ARG 118 291 291 ARG ARG A . n A 1 119 LEU 119 292 292 LEU LEU A . n A 1 120 VAL 120 293 293 VAL VAL A . n A 1 121 GLU 121 294 294 GLU GLU A . n A 1 122 ALA 122 295 295 ALA ALA A . n A 1 123 GLU 123 296 296 GLU GLU A . n A 1 124 VAL 124 297 297 VAL VAL A . n A 1 125 HIS 125 298 298 HIS HIS A . n A 1 126 ARG 126 299 299 ARG ARG A . n A 1 127 LEU 127 300 300 LEU LEU A . n A 1 128 VAL 128 301 301 VAL VAL A . n A 1 129 VAL 129 302 302 VAL VAL A . n A 1 130 VAL 130 303 303 VAL VAL A . n A 1 131 ASP 131 304 304 ASP ASP A . n A 1 132 GLU 132 305 305 GLU GLU A . n A 1 133 ASN 133 306 306 ASN ASN A . n A 1 134 ASP 134 307 307 ASP ASP A . n A 1 135 VAL 135 308 308 VAL VAL A . n A 1 136 VAL 136 309 309 VAL VAL A . n A 1 137 LYS 137 310 310 LYS LYS A . n A 1 138 GLY 138 311 311 GLY GLY A . n A 1 139 ILE 139 312 312 ILE ILE A . n A 1 140 VAL 140 313 313 VAL VAL A . n A 1 141 SER 141 314 314 SER SER A . n A 1 142 LEU 142 315 315 LEU LEU A . n A 1 143 SER 143 316 316 SER SER A . n A 1 144 ASP 144 317 317 ASP ASP A . n A 1 145 ILE 145 318 318 ILE ILE A . n A 1 146 LEU 146 319 319 LEU LEU A . n A 1 147 GLN 147 320 320 GLN GLN A . n A 1 148 ALA 148 321 321 ALA ALA A . n A 1 149 LEU 149 322 322 LEU LEU A . n A 1 150 VAL 150 323 323 VAL VAL A . n A 1 151 LEU 151 324 324 LEU LEU A . n A 1 152 THR 152 325 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMZ 1 1324 1324 AMZ AMZ A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . C 3 HOH 105 2105 2105 HOH HOH A . C 3 HOH 106 2106 2106 HOH HOH A . C 3 HOH 107 2107 2107 HOH HOH A . C 3 HOH 108 2108 2108 HOH HOH A . C 3 HOH 109 2109 2109 HOH HOH A . C 3 HOH 110 2110 2110 HOH HOH A . C 3 HOH 111 2111 2111 HOH HOH A . C 3 HOH 112 2112 2112 HOH HOH A . C 3 HOH 113 2113 2113 HOH HOH A . C 3 HOH 114 2114 2114 HOH HOH A . C 3 HOH 115 2115 2115 HOH HOH A . C 3 HOH 116 2116 2116 HOH HOH A . C 3 HOH 117 2117 2117 HOH HOH A . C 3 HOH 118 2118 2118 HOH HOH A . C 3 HOH 119 2119 2119 HOH HOH A . C 3 HOH 120 2120 2120 HOH HOH A . C 3 HOH 121 2121 2121 HOH HOH A . C 3 HOH 122 2122 2122 HOH HOH A . C 3 HOH 123 2123 2123 HOH HOH A . C 3 HOH 124 2124 2124 HOH HOH A . C 3 HOH 125 2125 2125 HOH HOH A . C 3 HOH 126 2126 2126 HOH HOH A . C 3 HOH 127 2127 2127 HOH HOH A . C 3 HOH 128 2128 2128 HOH HOH A . C 3 HOH 129 2129 2129 HOH HOH A . C 3 HOH 130 2130 2130 HOH HOH A . C 3 HOH 131 2131 2131 HOH HOH A . C 3 HOH 132 2132 2132 HOH HOH A . C 3 HOH 133 2133 2133 HOH HOH A . C 3 HOH 134 2134 2134 HOH HOH A . C 3 HOH 135 2135 2135 HOH HOH A . C 3 HOH 136 2136 2136 HOH HOH A . C 3 HOH 137 2137 2137 HOH HOH A . C 3 HOH 138 2138 2138 HOH HOH A . C 3 HOH 139 2139 2139 HOH HOH A . C 3 HOH 140 2140 2140 HOH HOH A . C 3 HOH 141 2141 2141 HOH HOH A . C 3 HOH 142 2142 2142 HOH HOH A . C 3 HOH 143 2143 2143 HOH HOH A . C 3 HOH 144 2144 2144 HOH HOH A . C 3 HOH 145 2145 2145 HOH HOH A . C 3 HOH 146 2146 2146 HOH HOH A . C 3 HOH 147 2147 2147 HOH HOH A . C 3 HOH 148 2148 2148 HOH HOH A . C 3 HOH 149 2149 2149 HOH HOH A . C 3 HOH 150 2150 2150 HOH HOH A . C 3 HOH 151 2151 2151 HOH HOH A . C 3 HOH 152 2152 2152 HOH HOH A . C 3 HOH 153 2153 2153 HOH HOH A . C 3 HOH 154 2154 2154 HOH HOH A . C 3 HOH 155 2155 2155 HOH HOH A . C 3 HOH 156 2156 2156 HOH HOH A . C 3 HOH 157 2157 2157 HOH HOH A . C 3 HOH 158 2158 2158 HOH HOH A . C 3 HOH 159 2159 2159 HOH HOH A . C 3 HOH 160 2160 2160 HOH HOH A . C 3 HOH 161 2161 2161 HOH HOH A . C 3 HOH 162 2162 2162 HOH HOH A . C 3 HOH 163 2163 2163 HOH HOH A . C 3 HOH 164 2164 2164 HOH HOH A . C 3 HOH 165 2165 2165 HOH HOH A . C 3 HOH 166 2166 2166 HOH HOH A . C 3 HOH 167 2167 2167 HOH HOH A . C 3 HOH 168 2168 2168 HOH HOH A . C 3 HOH 169 2169 2169 HOH HOH A . C 3 HOH 170 2170 2170 HOH HOH A . C 3 HOH 171 2171 2171 HOH HOH A . C 3 HOH 172 2172 2172 HOH HOH A . C 3 HOH 173 2173 2173 HOH HOH A . C 3 HOH 174 2174 2174 HOH HOH A . C 3 HOH 175 2175 2175 HOH HOH A . C 3 HOH 176 2176 2176 HOH HOH A . C 3 HOH 177 2177 2177 HOH HOH A . C 3 HOH 178 2178 2178 HOH HOH A . C 3 HOH 179 2179 2179 HOH HOH A . C 3 HOH 180 2180 2180 HOH HOH A . C 3 HOH 181 2181 2181 HOH HOH A . C 3 HOH 182 2182 2182 HOH HOH A . C 3 HOH 183 2183 2183 HOH HOH A . C 3 HOH 184 2184 2184 HOH HOH A . C 3 HOH 185 2185 2185 HOH HOH A . C 3 HOH 186 2186 2186 HOH HOH A . C 3 HOH 187 2187 2187 HOH HOH A . C 3 HOH 188 2188 2188 HOH HOH A . C 3 HOH 189 2189 2189 HOH HOH A . C 3 HOH 190 2190 2190 HOH HOH A . C 3 HOH 191 2191 2191 HOH HOH A . C 3 HOH 192 2192 2192 HOH HOH A . C 3 HOH 193 2193 2193 HOH HOH A . C 3 HOH 194 2194 2194 HOH HOH A . C 3 HOH 195 2195 2195 HOH HOH A . C 3 HOH 196 2196 2196 HOH HOH A . C 3 HOH 197 2197 2197 HOH HOH A . C 3 HOH 198 2198 2198 HOH HOH A . C 3 HOH 199 2199 2199 HOH HOH A . C 3 HOH 200 2200 2200 HOH HOH A . C 3 HOH 201 2201 2201 HOH HOH A . C 3 HOH 202 2202 2202 HOH HOH A . C 3 HOH 203 2203 2203 HOH HOH A . C 3 HOH 204 2204 2204 HOH HOH A . C 3 HOH 205 2205 2205 HOH HOH A . C 3 HOH 206 2206 2206 HOH HOH A . C 3 HOH 207 2207 2207 HOH HOH A . C 3 HOH 208 2208 2208 HOH HOH A . C 3 HOH 209 2209 2209 HOH HOH A . C 3 HOH 210 2210 2210 HOH HOH A . C 3 HOH 211 2211 2211 HOH HOH A . C 3 HOH 212 2212 2212 HOH HOH A . C 3 HOH 213 2213 2213 HOH HOH A . C 3 HOH 214 2214 2214 HOH HOH A . C 3 HOH 215 2215 2215 HOH HOH A . C 3 HOH 216 2216 2216 HOH HOH A . C 3 HOH 217 2217 2217 HOH HOH A . C 3 HOH 218 2218 2218 HOH HOH A . C 3 HOH 219 2219 2219 HOH HOH A . C 3 HOH 220 2220 2220 HOH HOH A . C 3 HOH 221 2221 2221 HOH HOH A . C 3 HOH 222 2222 2222 HOH HOH A . C 3 HOH 223 2223 2223 HOH HOH A . C 3 HOH 224 2224 2224 HOH HOH A . C 3 HOH 225 2225 2225 HOH HOH A . C 3 HOH 226 2226 2226 HOH HOH A . C 3 HOH 227 2227 2227 HOH HOH A . C 3 HOH 228 2228 2228 HOH HOH A . C 3 HOH 229 2229 2229 HOH HOH A . C 3 HOH 230 2230 2230 HOH HOH A . C 3 HOH 231 2231 2231 HOH HOH A . C 3 HOH 232 2232 2232 HOH HOH A . C 3 HOH 233 2233 2233 HOH HOH A . C 3 HOH 234 2234 2234 HOH HOH A . C 3 HOH 235 2235 2235 HOH HOH A . C 3 HOH 236 2236 2236 HOH HOH A . C 3 HOH 237 2237 2237 HOH HOH A . C 3 HOH 238 2238 2238 HOH HOH A . C 3 HOH 239 2239 2239 HOH HOH A . C 3 HOH 240 2240 2240 HOH HOH A . C 3 HOH 241 2241 2241 HOH HOH A . C 3 HOH 242 2242 2242 HOH HOH A . C 3 HOH 243 2243 2243 HOH HOH A . C 3 HOH 244 2244 2244 HOH HOH A . C 3 HOH 245 2245 2245 HOH HOH A . C 3 HOH 246 2246 2246 HOH HOH A . C 3 HOH 247 2247 2247 HOH HOH A . C 3 HOH 248 2248 2248 HOH HOH A . C 3 HOH 249 2249 2249 HOH HOH A . C 3 HOH 250 2250 2250 HOH HOH A . C 3 HOH 251 2251 2251 HOH HOH A . C 3 HOH 252 2252 2252 HOH HOH A . C 3 HOH 253 2253 2253 HOH HOH A . C 3 HOH 254 2254 2254 HOH HOH A . C 3 HOH 255 2255 2255 HOH HOH A . C 3 HOH 256 2256 2256 HOH HOH A . C 3 HOH 257 2257 2257 HOH HOH A . C 3 HOH 258 2258 2258 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 39.7057793306 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 49.1841709768 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2227 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-08 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019G ? 1 d*TREK 'data reduction' . ? 2 d*TREK 'data scaling' . ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2088 ? ? O A HOH 2245 ? ? 1.94 2 1 OD1 A ASN 306 ? ? O A HOH 2228 ? ? 1.98 3 1 O A HOH 2021 ? ? O A HOH 2088 ? ? 2.15 4 1 O A HOH 2021 ? ? O A HOH 2087 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 224 ? ? 64.51 62.65 2 1 ASP A 259 ? ? -92.50 50.44 3 1 LEU A 322 ? ? -48.47 -18.19 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 HIS _pdbx_validate_polymer_linkage.auth_seq_id_1 -1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 GLU _pdbx_validate_polymer_linkage.auth_seq_id_2 182 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.73 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2006 ? 5.90 . 2 1 O ? A HOH 2008 ? 6.78 . 3 1 O ? A HOH 2137 ? 6.04 . 4 1 O ? A HOH 2141 ? 5.81 . 5 1 O ? A HOH 2146 ? 6.21 . 6 1 O ? A HOH 2151 ? 6.35 . 7 1 O ? A HOH 2169 ? 6.73 . 8 1 O ? A HOH 2173 ? 7.30 . 9 1 O ? A HOH 2184 ? 7.05 . 10 1 O ? A HOH 2185 ? 7.20 . 11 1 O ? A HOH 2189 ? 6.27 . 12 1 O ? A HOH 2206 ? 6.95 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 324 ? CA ? A LEU 151 CA 2 1 Y 1 A LEU 324 ? C ? A LEU 151 C 3 1 Y 1 A LEU 324 ? O ? A LEU 151 O 4 1 Y 1 A LEU 324 ? CB ? A LEU 151 CB 5 1 Y 1 A LEU 324 ? CG ? A LEU 151 CG 6 1 Y 1 A LEU 324 ? CD1 ? A LEU 151 CD1 7 1 Y 1 A LEU 324 ? CD2 ? A LEU 151 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -8 ? A MET 1 2 1 Y 1 A ALA -7 ? A ALA 2 3 1 Y 1 A HIS -6 ? A HIS 3 4 1 Y 1 A HIS -5 ? A HIS 4 5 1 Y 1 A HIS -4 ? A HIS 5 6 1 Y 1 A HIS -3 ? A HIS 6 7 1 Y 1 A HIS -2 ? A HIS 7 8 1 Y 1 A THR 325 ? A THR 152 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' AMZ 3 water HOH #