HEADER IMMUNE SYSTEM 22-MAR-07 2UWN TITLE CRYSTAL STRUCTURE OF HUMAN COMPLEMENT FACTOR H, SCR DOMAINS 6-8 (H402 TITLE 2 RISK VARIANT), IN COMPLEX WITH LIGAND. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN COMPLEMENT FACTOR H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAINS 6,7 AND 8, RESIDUES 322-506; COMPND 5 SYNONYM: H FACTOR 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-14B KEYWDS ALTERNATIVE SPLICING, SUCROSE OCTASULPHATE, AGE-RELATED MACULAR KEYWDS 2 DEGENERATION, COMPLEMENT ALTERNATE PATHWAY, DISEASE MUTATION, KEYWDS 3 GLYCOSAMINOGLYCAN, GLYCOPROTEIN, INNATE IMMUNITY, IMMUNE RESPONSE, KEYWDS 4 SUSHI, FACTOR H, COMPLEMENT, POLYMORPHISM, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.E.PROSSER,S.JOHNSON,P.ROVERSI,A.P.HERBERT,B.S.BLAUM,J.TYRRELL, AUTHOR 2 T.A.JOWITT,S.J.CLARK,E.TERELLI,D.UHRIN,P.N.BARLOW,R.B.SIM,A.J.DAY, AUTHOR 3 S.M.LEA REVDAT 5 13-DEC-23 2UWN 1 HETSYN REVDAT 4 29-JUL-20 2UWN 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 24-FEB-09 2UWN 1 VERSN REVDAT 2 16-OCT-07 2UWN 1 AUTHOR JRNL REVDAT 1 02-OCT-07 2UWN 0 JRNL AUTH B.E.PROSSER,S.JOHNSON,P.ROVERSI,A.P.HERBERT,B.S.BLAUM, JRNL AUTH 2 J.TYRRELL,T.A.JOWITT,S.J.CLARK,E.TARELLI,D.UHRIN,P.N.BARLOW, JRNL AUTH 3 R.B.SIM,A.J.DAY,S.M.LEA JRNL TITL STRUCTURAL BASIS FOR COMPLEMENT FACTOR H LINKED AGE-RELATED JRNL TITL 2 MACULAR DEGENERATION. JRNL REF J.EXP.MED. V. 204 2277 2007 JRNL REFN ISSN 0022-1007 JRNL PMID 17893204 JRNL DOI 10.1084/JEM.20071069 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 8366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 834 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : TNT BCORREL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BUSTER-TNT-GELLY 1.9.3 E. BLANC, P. REMARK 3 ROVERSI, C. VONRHEIN, C. FLENSBURG, S. M. LEA AND G. BRICOGNE REMARK 4 REMARK 4 2UWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1290032003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8392 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, BUSTER-TNT, SHARP-SOLOMON, DM, PIRATE REMARK 200 STARTING MODEL: PDB ENTRY 2JGW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, PH4.5, 20% (W/V) REMARK 280 PEG3000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.65550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.65550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.37800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.24550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.37800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.24550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.65550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.37800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.24550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.65550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.37800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.24550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C ACT A1509 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 320 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2036 O HOH A 2045 1.54 REMARK 500 O HOH A 2085 O HOH A 2111 1.82 REMARK 500 O HOH A 2079 O HOH A 2106 1.84 REMARK 500 O HOH A 2004 O HOH A 2006 1.86 REMARK 500 N TYR A 327 O HOH A 2005 1.95 REMARK 500 O HOH A 2080 O HOH A 2110 2.02 REMARK 500 O HOH A 2034 O HOH A 2069 2.07 REMARK 500 O HOH A 2036 O HOH A 2049 2.09 REMARK 500 O HOH A 2060 O HOH A 2098 2.10 REMARK 500 NZ LYS A 478 O HOH A 2112 2.13 REMARK 500 O HOH A 2086 O HOH A 2087 2.13 REMARK 500 O HOH A 2046 O HOH A 2091 2.15 REMARK 500 O HOH A 2099 O HOH A 2113 2.17 REMARK 500 O HOH A 2025 O HOH A 2076 2.17 REMARK 500 OG SER A 411 O HOH A 2052 2.18 REMARK 500 NE2 HIS A 402 O21 GU4 B 1 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2017 O HOH A 2116 4466 0.35 REMARK 500 O HOH A 2095 O HOH A 2105 8556 1.83 REMARK 500 OG SER A 354 O10 GU4 B 1 6455 2.03 REMARK 500 NH1 ARG A 444 O1S3 YYJ B 2 3555 2.08 REMARK 500 OG SER A 354 O10 GU4 B 1 6455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 324 C CYS A 325 N 0.161 REMARK 500 PRO A 343 C TYR A 344 N -0.148 REMARK 500 GLY A 486 C GLY A 486 O 0.187 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 343 CA - C - N ANGL. DEV. = 15.8 DEGREES REMARK 500 PRO A 343 O - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 GLU A 487 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 322 59.00 -90.73 REMARK 500 PRO A 343 42.01 -97.93 REMARK 500 HIS A 402 106.32 -56.99 REMARK 500 LYS A 424 93.59 -167.30 REMARK 500 GLU A 462 -79.20 -114.10 REMARK 500 LYS A 470 -7.03 73.00 REMARK 500 THR A 483 -168.43 -78.49 REMARK 500 ALA A 484 40.57 -95.30 REMARK 500 ALA A 501 -171.18 -175.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 323 PRO A 324 -54.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 323 -11.18 REMARK 500 GLY A 486 -11.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JGX RELATED DB: PDB REMARK 900 STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD NOT AT REMARK 900 RISK VARIENT ( 402Y) REMARK 900 RELATED ID: 1FHC RELATED DB: PDB REMARK 900 C3D AND HEPARIN BINDING COMPLEMENT FACTOR H DOMAINS SCR19-20 REMARK 900 RELATED ID: 2JGW RELATED DB: PDB REMARK 900 STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD AT RISK REMARK 900 VARIENT (402H) REMARK 900 RELATED ID: 1KOV RELATED DB: PDB REMARK 900 HOMOLOGY MODEL OF HUMAN FACTOR H SCRS 6 AND 7 REMARK 900 RELATED ID: 1HAQ RELATED DB: PDB REMARK 900 FOUR MODELS OF HUMAN FACTOR H DETERMINED BY SOLUTION SCATTERING REMARK 900 CURVE-FITTING AND HOMOLOGY MODELLING REMARK 900 RELATED ID: 2V8E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN COMPLEMENT FACTOR H, SCR DOMAINS 6-8 REMARK 900 (H402 RISK VARIANT), IN COMPLEX WITH LIGAND. REMARK 900 RELATED ID: 1HFH RELATED DB: PDB REMARK 900 FACTOR H, 15TH AND 16TH C-MODULE PAIR ( NMR, MINIMIZED AVERAGED REMARK 900 STRUCTURE) REMARK 900 RELATED ID: 2G7I RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN COMPLEMENT FACTOR H CARBOXYL TERMINALDOMAINS 19- REMARK 900 20: A BASIS FOR ATYPICAL HEMOLYTIC UREMICSYNDROME REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS RESIDUES 321-505 OF THE ABOVE ENTRY WITH AN N- REMARK 999 TERMINAL METHIONINE. RESIDUES 400, 402 AND 493 ARE REMARK 999 POLYMORPHIC. DBREF 2UWN A 320 321 PDB 2UWN 2UWN 320 321 DBREF 2UWN A 322 506 UNP P08603 CFAH_HUMAN 322 506 SEQRES 1 A 187 MET GLY LEU LYS PRO CYS ASP TYR PRO ASP ILE LYS HIS SEQRES 2 A 187 GLY GLY LEU TYR HIS GLU ASN MET ARG ARG PRO TYR PHE SEQRES 3 A 187 PRO VAL ALA VAL GLY LYS TYR TYR SER TYR TYR CYS ASP SEQRES 4 A 187 GLU HIS PHE GLU THR PRO SER GLY SER TYR TRP ASP HIS SEQRES 5 A 187 ILE HIS CYS THR GLN ASP GLY TRP SER PRO ALA VAL PRO SEQRES 6 A 187 CYS LEU ARG LYS CYS TYR PHE PRO TYR LEU GLU ASN GLY SEQRES 7 A 187 TYR ASN GLN ASN HIS GLY ARG LYS PHE VAL GLN GLY LYS SEQRES 8 A 187 SER ILE ASP VAL ALA CYS HIS PRO GLY TYR ALA LEU PRO SEQRES 9 A 187 LYS ALA GLN THR THR VAL THR CYS MET GLU ASN GLY TRP SEQRES 10 A 187 SER PRO THR PRO ARG CYS ILE ARG VAL LYS THR CYS SER SEQRES 11 A 187 LYS SER SER ILE ASP ILE GLU ASN GLY PHE ILE SER GLU SEQRES 12 A 187 SER GLN TYR THR TYR ALA LEU LYS GLU LYS ALA LYS TYR SEQRES 13 A 187 GLN CYS LYS LEU GLY TYR VAL THR ALA ASP GLY GLU THR SEQRES 14 A 187 SER GLY SER ILE THR CYS GLY LYS ASP GLY TRP SER ALA SEQRES 15 A 187 GLN PRO THR CYS ILE HET GU4 B 1 54 HET YYJ B 2 56 HET ACT A1509 4 HET CL A1510 1 HET CL A1511 1 HET SO4 A1512 5 HET SO4 A1513 5 HET SO4 A1514 5 HETNAM GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE HETNAM YYJ 1,3,4,6-TETRA-O-SULFO-BETA-D-FRUCTOFURANOSE HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOSE; 2,3,4,6- HETSYN 2 GU4 TETRA-O-SULFONATO-D-GLUCOSE; 2,3,4,6-TETRA-O- HETSYN 3 GU4 SULFONATO-GLUCOSE FORMUL 2 GU4 C6 H12 O18 S4 FORMUL 2 YYJ C6 H12 O18 S4 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 CL 2(CL 1-) FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 HOH *135(H2 O) HELIX 1 1 HIS A 337 ARG A 342 1 6 HELIX 2 2 SER A 451 ILE A 453 5 3 SHEET 1 AA 4 GLY A 333 LEU A 335 0 SHEET 2 AA 4 TYR A 352 CYS A 357 -1 O TYR A 356 N GLY A 334 SHEET 3 AA 4 TRP A 369 THR A 375 -1 O ASP A 370 N TYR A 355 SHEET 4 AA 4 GLY A 378 SER A 380 -1 O GLY A 378 N THR A 375 SHEET 1 AB 3 PHE A 361 GLU A 362 0 SHEET 2 AB 3 LEU A 386 TYR A 390 -1 O LEU A 386 N GLU A 362 SHEET 3 AB 3 LYS A 405 VAL A 407 -1 O PHE A 406 N CYS A 389 SHEET 1 AC 2 GLY A 397 TYR A 398 0 SHEET 2 AC 2 ALA A 415 CYS A 416 -1 O ALA A 415 N TYR A 398 SHEET 1 AD 3 SER A 411 ASP A 413 0 SHEET 2 AD 3 THR A 428 MET A 432 -1 O VAL A 429 N ILE A 412 SHEET 3 AD 3 GLY A 435 SER A 437 -1 O GLY A 435 N MET A 432 SHEET 1 AE 2 TYR A 420 ALA A 421 0 SHEET 2 AE 2 ILE A 443 ARG A 444 -1 O ILE A 443 N ALA A 421 SHEET 1 AF 2 THR A 447 SER A 449 0 SHEET 2 AF 2 THR A 466 ALA A 468 -1 O TYR A 467 N CYS A 448 SHEET 1 AG 4 GLY A 458 PHE A 459 0 SHEET 2 AG 4 LYS A 472 CYS A 477 -1 O GLN A 476 N PHE A 459 SHEET 3 AG 4 SER A 489 GLY A 495 -1 O GLY A 490 N TYR A 475 SHEET 4 AG 4 GLY A 498 TRP A 499 -1 O GLY A 498 N GLY A 495 SSBOND 1 CYS A 325 CYS A 374 1555 1555 2.03 SSBOND 2 CYS A 357 CYS A 385 1555 1555 2.04 SSBOND 3 CYS A 389 CYS A 431 1555 1555 2.03 SSBOND 4 CYS A 416 CYS A 442 1555 1555 2.03 SSBOND 5 CYS A 448 CYS A 494 1555 1555 2.04 SSBOND 6 CYS A 477 CYS A 505 1555 1555 2.03 LINK NH1 ARG A 444 O3S3AYYJ B 2 3555 1555 1.78 LINK NH1 ARG A 444 S3 AYYJ B 2 3555 1555 2.05 LINK C1 AGU4 B 1 O2 AYYJ B 2 1555 1555 1.40 LINK C1 BGU4 B 1 O2 BYYJ B 2 1555 1555 1.45 CISPEP 1 ARG A 342 PRO A 343 0 3.94 CISPEP 2 PHE A 345 PRO A 346 0 -1.40 CISPEP 3 SER A 380 PRO A 381 0 1.03 CISPEP 4 PRO A 423 LYS A 424 0 4.34 CISPEP 5 LYS A 424 ALA A 425 0 -2.73 CISPEP 6 SER A 437 PRO A 438 0 -2.24 CISPEP 7 GLU A 462 SER A 463 0 -3.64 CISPEP 8 ASP A 485 GLY A 486 0 -19.35 CRYST1 74.756 92.491 57.311 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013377 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017449 0.00000