HEADER CHAPERONE 02-APR-07 2UY6 TITLE CRYSTAL STRUCTURE OF THE P PILUS ROD SUBUNIT PAPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMID CHAPERONE PAPD PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HIS-TAGGED C TERMINUS; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PAP FIMBRIAL MAJOR PILIN PROTEIN; COMPND 8 CHAIN: B, C; COMPND 9 SYNONYM: PAP PILI; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 364106; SOURCE 4 STRAIN: UTI89; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 STRAIN: J96; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS DONOR STRAND COMPLEMENTATION, PILI/N-TERMINAL EXTENSION, PILUS KEYWDS 2 BIOGENESIS, DONOR-STRAND EXCHANGE, NTE, DSC, DSE, PAPA, PAPD, KEYWDS 3 FIMBRIA, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR D.VERGER,E.BULLITT,S.J.HULTGREN,G.WAKSMAN REVDAT 3 13-DEC-23 2UY6 1 REMARK REVDAT 2 24-FEB-09 2UY6 1 VERSN REVDAT 1 29-MAY-07 2UY6 0 JRNL AUTH D.VERGER,E.BULLITT,S.J.HULTGREN,G.WAKSMAN JRNL TITL CRYSTAL STRUCTURE OF THE P PILUS ROD SUBUNIT PAPA. JRNL REF PLOS PATHOG. V. 3 E73 2007 JRNL REFN ISSN 1553-7366 JRNL PMID 17511517 JRNL DOI 10.1371/JOURNAL.PPAT.0030073 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1300 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 26 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 863 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.38100 REMARK 3 B22 (A**2) : -0.54400 REMARK 3 B33 (A**2) : 6.92400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.30400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.308 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 46.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE 2 MOLECULES OF PAPA IN THE REMARK 3 TERNARY COMPLEX (DA2). PAPA MOL B IS DONOR STRAND COMPLEMENTED REMARK 3 BY PAPD, PAPA MOL C IS DONOR STRAND EXCHANGED BY PAPA MOL B REMARK 4 REMARK 4 2UY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-07. REMARK 100 THE DEPOSITION ID IS D_1290032167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 76.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PDK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8K 12%, 5% ISOPROPANOL, TRIS 0.1M REMARK 280 PH 7.5, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.55000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.55000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLY 37 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN C, GLY 37 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 123 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN C, THR 123 TO LEU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 218 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 ILE B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 GLY B 7 REMARK 465 GLN B 8 REMARK 465 GLY B 9 REMARK 465 ASN B 70 REMARK 465 GLY B 71 REMARK 465 ALA B 72 REMARK 465 LYS B 73 REMARK 465 ALA C 1 REMARK 465 PRO C 2 REMARK 465 THR C 3 REMARK 465 ILE C 4 REMARK 465 PRO C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLN C 8 REMARK 465 GLY C 9 REMARK 465 LYS C 10 REMARK 465 VAL C 11 REMARK 465 THR C 12 REMARK 465 PHE C 13 REMARK 465 ASN C 14 REMARK 465 ASN C 15 REMARK 465 THR C 16 REMARK 465 VAL C 17 REMARK 465 VAL C 18 REMARK 465 ASP C 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 ILE A 206 CD1 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 217 CA C O CB CG CD OE1 REMARK 470 GLU A 217 OE2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 ILE B 63 CG1 CG2 CD1 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 ASN B 122 CG OD1 ND2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 ASP B 126 CG OD1 OD2 REMARK 470 GLU B 149 CG CD OE1 OE2 REMARK 470 THR C 64 OG1 CG2 REMARK 470 LYS C 67 CG CD CE NZ REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 LYS C 74 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 39 -169.39 -78.44 REMARK 500 ASN A 101 63.53 62.17 REMARK 500 PRO A 124 -66.39 -20.94 REMARK 500 LEU A 156 103.02 -160.42 REMARK 500 ARG A 176 67.14 39.18 REMARK 500 GLN A 179 138.20 -175.32 REMARK 500 ARG A 200 71.87 -119.14 REMARK 500 ASN A 208 62.97 -118.04 REMARK 500 THR B 64 42.60 -71.30 REMARK 500 ALA B 65 -13.87 -144.82 REMARK 500 ASN B 87 121.04 -33.81 REMARK 500 ASN B 122 21.49 -178.53 REMARK 500 THR B 123 36.97 -83.37 REMARK 500 ASP B 126 129.60 -20.28 REMARK 500 CYS C 22 -167.67 -120.73 REMARK 500 PHE C 66 47.06 -85.16 REMARK 500 ASN C 70 10.54 -64.57 REMARK 500 ALA C 72 89.66 -54.58 REMARK 500 LYS C 73 86.41 -50.97 REMARK 500 LYS C 74 -172.21 54.20 REMARK 500 THR C 99 -45.50 -160.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N0L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PAPD CHAPERONE (C- TERMINALLY 6XHISTIDINE- REMARK 900 TAGGED) BOUND TO THE PAPE PILUS SUBUNIT (N-TERMINAL-DELETED) FROM REMARK 900 UROPATHOGENIC E. COLI REMARK 900 RELATED ID: 1PDK RELATED DB: PDB REMARK 900 PAPD-PAPK CHAPERONE-PILUS SUBUNIT COMPLEX FROM E.COLI P PILUS REMARK 900 RELATED ID: 1QPP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 1QPX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF-CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 2J2Z RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE CHAPERONE PAPD IN COMPLEX WITH THE PILUS REMARK 900 TERMINATOR SUBUNIT PAPH AT 2.3 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2J7L RELATED DB: PDB REMARK 900 E. COLI P PILUS CHAPERONE PAPD IN COMPLEX WITH A PILUS BIOGENESIS REMARK 900 INHIBITOR, PILICIDE 2C REMARK 900 RELATED ID: 3DPA RELATED DB: PDB REMARK 900 PAPD REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF MATURE PROTEIN AFTER SIGNAL PEPTIDE CLIVAGE DBREF 2UY6 A 1 218 UNP Q1R2W9 Q1R2W9_ECOUT 22 239 DBREF 2UY6 B 1 163 UNP P04127 PAPA_ECOLI 23 185 DBREF 2UY6 C 1 163 UNP P04127 PAPA_ECOLI 23 185 SEQADV 2UY6 ASN B 15 UNP P04127 GLY 37 ENGINEERED MUTATION SEQADV 2UY6 ASN C 15 UNP P04127 GLY 37 ENGINEERED MUTATION SEQADV 2UY6 LEU B 101 UNP P04127 THR 123 ENGINEERED MUTATION SEQADV 2UY6 LEU C 101 UNP P04127 THR 123 ENGINEERED MUTATION SEQRES 1 A 218 ALA VAL SER LEU ASP ARG THR ARG ALA VAL PHE ASP GLY SEQRES 2 A 218 SER GLU LYS SER MET THR LEU ASP ILE SER ASN ASP ASN SEQRES 3 A 218 LYS GLN LEU PRO TYR LEU ALA GLN ALA TRP ILE GLU ASN SEQRES 4 A 218 GLU ASN GLN GLU LYS ILE ILE THR GLY PRO VAL ILE ALA SEQRES 5 A 218 THR PRO PRO VAL GLN ARG LEU GLU PRO GLY ALA LYS SER SEQRES 6 A 218 MET VAL ARG LEU SER THR THR PRO ASP ILE SER LYS LEU SEQRES 7 A 218 PRO GLN ASP ARG GLU SER LEU PHE TYR PHE ASN LEU ARG SEQRES 8 A 218 GLU ILE PRO PRO ARG SER GLU LYS ALA ASN VAL LEU GLN SEQRES 9 A 218 ILE ALA LEU GLN THR LYS ILE LYS LEU PHE TYR ARG PRO SEQRES 10 A 218 ALA ALA ILE LYS THR ARG PRO ASN GLU VAL TRP GLN ASP SEQRES 11 A 218 GLN LEU ILE LEU ASN LYS VAL SER GLY GLY TYR ARG ILE SEQRES 12 A 218 GLU ASN PRO THR PRO TYR TYR VAL THR VAL ILE GLY LEU SEQRES 13 A 218 GLY GLY SER GLU LYS GLN ALA GLU GLU GLY GLU PHE GLU SEQRES 14 A 218 THR VAL MET LEU SER PRO ARG SER GLU GLN THR VAL LYS SEQRES 15 A 218 SER ALA ASN TYR ASN THR PRO TYR LEU SER TYR ILE ASN SEQRES 16 A 218 ASP TYR GLY GLY ARG PRO VAL LEU SER PHE ILE CYS ASN SEQRES 17 A 218 GLY SER ARG CYS SER VAL LYS LYS GLU LYS SEQRES 1 B 163 ALA PRO THR ILE PRO GLN GLY GLN GLY LYS VAL THR PHE SEQRES 2 B 163 ASN ASN THR VAL VAL ASP ALA PRO CYS SER ILE SER GLN SEQRES 3 B 163 LYS SER ALA ASP GLN SER ILE ASP PHE GLY GLN LEU SER SEQRES 4 B 163 LYS SER PHE LEU GLU ALA GLY GLY VAL SER LYS PRO MET SEQRES 5 B 163 ASP LEU ASP ILE GLU LEU VAL ASN CYS ASP ILE THR ALA SEQRES 6 B 163 PHE LYS GLY GLY ASN GLY ALA LYS LYS GLY THR VAL LYS SEQRES 7 B 163 LEU ALA PHE THR GLY PRO ILE VAL ASN GLY HIS SER ASP SEQRES 8 B 163 GLU LEU ASP THR ASN GLY GLY THR GLY LEU ALA ILE VAL SEQRES 9 B 163 VAL GLN GLY ALA GLY LYS ASN VAL VAL PHE ASP GLY SER SEQRES 10 B 163 GLU GLY ASP ALA ASN THR LEU LYS ASP GLY GLU ASN VAL SEQRES 11 B 163 LEU HIS TYR THR ALA VAL VAL LYS LYS SER SER ALA VAL SEQRES 12 B 163 GLY ALA ALA VAL THR GLU GLY ALA PHE SER ALA VAL ALA SEQRES 13 B 163 ASN PHE ASN LEU THR TYR GLN SEQRES 1 C 163 ALA PRO THR ILE PRO GLN GLY GLN GLY LYS VAL THR PHE SEQRES 2 C 163 ASN ASN THR VAL VAL ASP ALA PRO CYS SER ILE SER GLN SEQRES 3 C 163 LYS SER ALA ASP GLN SER ILE ASP PHE GLY GLN LEU SER SEQRES 4 C 163 LYS SER PHE LEU GLU ALA GLY GLY VAL SER LYS PRO MET SEQRES 5 C 163 ASP LEU ASP ILE GLU LEU VAL ASN CYS ASP ILE THR ALA SEQRES 6 C 163 PHE LYS GLY GLY ASN GLY ALA LYS LYS GLY THR VAL LYS SEQRES 7 C 163 LEU ALA PHE THR GLY PRO ILE VAL ASN GLY HIS SER ASP SEQRES 8 C 163 GLU LEU ASP THR ASN GLY GLY THR GLY LEU ALA ILE VAL SEQRES 9 C 163 VAL GLN GLY ALA GLY LYS ASN VAL VAL PHE ASP GLY SER SEQRES 10 C 163 GLU GLY ASP ALA ASN THR LEU LYS ASP GLY GLU ASN VAL SEQRES 11 C 163 LEU HIS TYR THR ALA VAL VAL LYS LYS SER SER ALA VAL SEQRES 12 C 163 GLY ALA ALA VAL THR GLU GLY ALA PHE SER ALA VAL ALA SEQRES 13 C 163 ASN PHE ASN LEU THR TYR GLN FORMUL 4 HOH *155(H2 O) HELIX 1 1 PRO A 73 LEU A 78 5 6 HELIX 2 2 PRO A 117 LYS A 121 5 5 HELIX 3 3 TRP A 128 LEU A 132 5 5 HELIX 4 4 SER A 159 GLY A 166 1 8 HELIX 5 5 SER B 39 GLY B 46 1 8 HELIX 6 6 SER C 25 ASP C 30 1 6 HELIX 7 7 LYS C 40 ALA C 45 1 6 SHEET 1 AA 4 VAL A 2 LEU A 4 0 SHEET 2 AA 4 SER A 17 ASN A 24 -1 O SER A 23 N SER A 3 SHEET 3 AA 4 LYS A 64 THR A 71 -1 O SER A 65 N ILE A 22 SHEET 4 AA 4 VAL A 50 THR A 53 -1 O ILE A 51 N SER A 70 SHEET 1 AB 4 ARG A 8 ASP A 12 0 SHEET 2 AB 4 VAL A 102 ARG A 116 1 O LYS A 112 N ALA A 9 SHEET 3 AB 4 SER A 84 ILE A 93 -1 O SER A 84 N TYR A 115 SHEET 4 AB 4 TYR A 31 GLU A 38 -1 O LEU A 32 N ILE A 93 SHEET 1 AC 5 ARG A 8 ASP A 12 0 SHEET 2 AC 5 VAL A 102 ARG A 116 1 O LYS A 112 N ALA A 9 SHEET 3 AC 5 SER B 153 TYR B 162 1 O ALA B 154 N GLN A 104 SHEET 4 AC 5 VAL B 77 THR B 82 -1 O LYS B 78 N THR B 161 SHEET 5 AC 5 ASP B 115 GLU B 118 -1 N GLY B 116 O PHE B 81 SHEET 1 AD 8 VAL A 171 LEU A 173 0 SHEET 2 AD 8 VAL A 151 GLY A 157 -1 O VAL A 151 N LEU A 173 SHEET 3 AD 8 TYR A 190 TYR A 193 -1 O TYR A 190 N GLY A 157 SHEET 4 AD 8 VAL A 202 CYS A 207 -1 O LEU A 203 N LEU A 191 SHEET 5 AD 8 ARG A 211 VAL A 214 -1 O SER A 213 N ILE A 206 SHEET 6 AD 8 ILE A 133 VAL A 137 -1 O LEU A 134 N CYS A 212 SHEET 7 AD 8 GLY A 140 ASN A 145 -1 O GLY A 140 N VAL A 137 SHEET 8 AD 8 SER A 177 LYS A 182 -1 O SER A 177 N ASN A 145 SHEET 1 CA 5 GLN C 31 SER C 39 0 SHEET 2 CA 5 VAL B 11 VAL B 18 1 O THR B 12 N ILE C 33 SHEET 3 CA 5 GLY C 150 TYR C 162 -1 O GLY C 150 N VAL B 17 SHEET 4 CA 5 THR C 76 THR C 82 -1 O LYS C 78 N THR C 161 SHEET 5 CA 5 ASN C 122 THR C 123 -1 O ASN C 122 N VAL C 77 SHEET 1 BA 6 SER B 23 SER B 25 0 SHEET 2 BA 6 MET B 52 VAL B 59 -1 O GLU B 57 N SER B 25 SHEET 3 BA 6 VAL B 130 LYS B 139 -1 O LEU B 131 N ILE B 56 SHEET 4 BA 6 LEU B 101 GLN B 106 -1 O ALA B 102 N LYS B 138 SHEET 5 BA 6 HIS B 89 ASP B 94 -1 O LEU B 93 N ILE B 103 SHEET 6 BA 6 ILE B 85 VAL B 86 -1 O VAL B 86 N HIS B 89 SHEET 1 CB 6 SER C 23 ILE C 24 0 SHEET 2 CB 6 MET C 52 CYS C 61 -1 O VAL C 59 N SER C 23 SHEET 3 CB 6 GLY C 127 LYS C 139 -1 O GLY C 127 N CYS C 61 SHEET 4 CB 6 LEU C 101 GLY C 107 -1 O ALA C 102 N LYS C 138 SHEET 5 CB 6 HIS C 89 ASP C 94 -1 O LEU C 93 N ILE C 103 SHEET 6 CB 6 ILE C 85 VAL C 86 -1 O VAL C 86 N HIS C 89 SHEET 1 CC 5 SER C 23 ILE C 24 0 SHEET 2 CC 5 MET C 52 CYS C 61 -1 O VAL C 59 N SER C 23 SHEET 3 CC 5 GLY C 127 LYS C 139 -1 O GLY C 127 N CYS C 61 SHEET 4 CC 5 LEU C 101 GLY C 107 -1 O ALA C 102 N LYS C 138 SHEET 5 CC 5 LYS C 110 ASN C 111 -1 O LYS C 110 N GLY C 107 SSBOND 1 CYS A 207 CYS A 212 1555 1555 2.04 SSBOND 2 CYS B 22 CYS B 61 1555 1555 2.05 SSBOND 3 CYS C 22 CYS C 61 1555 1555 2.04 CISPEP 1 GLY A 48 PRO A 49 0 0.51 CISPEP 2 THR A 53 PRO A 54 0 -0.27 CRYST1 133.100 73.560 80.480 90.00 108.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007513 0.000000 0.002564 0.00000 SCALE2 0.000000 0.013594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013129 0.00000