HEADER TRANSCRIPTION 07-JUN-07 2V2T TITLE X-RAY STRUCTURE OF A NF-KB P50-RELB-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR RELB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 91-378; COMPND 5 SYNONYM: RELB; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT, RESIDUES 38-363; COMPND 11 SYNONYM: DNA-BINDING FACTOR KBF1, EBP-1, NF-KAPPA-B1 P84/NF-KAPPA-B1 COMPND 12 P98, P50; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*CP*GP*GP*GP*AP*AP*TP*TP*CP*CP*CP)-3'; COMPND 16 CHAIN: C, D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: NF-KB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 CELL_LINE: NF-KB1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES KEYWDS 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL, AQUIFEX AEOLICUS, KEYWDS 2 NUCLEOTIDE-BINDING, ISOPRENE BIOSYNTHESIS, TRANSCRIPTION, KINASE, KEYWDS 3 TRANSFERASE, ATP-BINDING, NON-MEVALONATE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.MOORTHY,D.B.HUANG,V.Y.WANG,D.VU,G.GHOSH REVDAT 4 13-DEC-23 2V2T 1 REMARK REVDAT 3 24-FEB-09 2V2T 1 VERSN REVDAT 2 16-OCT-07 2V2T 1 JRNL REVDAT 1 03-JUL-07 2V2T 0 JRNL AUTH A.K.MOORTHY,D.B.HUANG,V.Y.WANG,D.VU,G.GHOSH JRNL TITL X-RAY STRUCTURE OF A NF-KAPPAB P50/RELB/DNA COMPLEX REVEALS JRNL TITL 2 ASSEMBLY OF MULTIPLE DIMERS ON TANDEM KAPPAB SITES. JRNL REF J.MOL.BIOL. V. 373 723 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17869269 JRNL DOI 10.1016/J.JMB.2007.08.039 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 89352.410 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 19087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 916 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2502 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 117 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.035 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4658 REMARK 3 NUCLEIC ACID ATOMS : 442 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.87000 REMARK 3 B22 (A**2) : 10.87000 REMARK 3 B33 (A**2) : -21.74000 REMARK 3 B12 (A**2) : 20.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.21 REMARK 3 BSOL : 19.58 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2V2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290032819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19931 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.040 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1VKX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG3350 100 MM NACITRATE 1MM REMARK 280 SPERMINE 5MM DTT, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 139.99000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 279.98000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 209.98500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 349.97500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.99500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 139.99000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 279.98000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 349.97500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 209.98500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 91 REMARK 465 GLY A 92 REMARK 465 ARG A 93 REMARK 465 LEU A 94 REMARK 465 VAL A 95 REMARK 465 SER A 96 REMARK 465 PRO A 97 REMARK 465 GLY A 98 REMARK 465 PRO A 99 REMARK 465 ILE B 351 REMARK 465 LYS B 352 REMARK 465 ASP B 353 REMARK 465 LYS B 354 REMARK 465 GLU B 355 REMARK 465 GLU B 356 REMARK 465 VAL B 357 REMARK 465 GLN B 358 REMARK 465 ARG B 359 REMARK 465 LYS B 360 REMARK 465 ARG B 361 REMARK 465 GLN B 362 REMARK 465 LYS B 363 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 197 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 371 CG CD1 CD2 REMARK 470 ASP B 183 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ARG A 285 OH TYR B 267 2.05 REMARK 500 OH TYR B 57 OP2 DT D 19 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 292 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 109 111.20 -170.05 REMARK 500 LYS A 112 111.91 -33.83 REMARK 500 CYS A 122 28.54 -67.09 REMARK 500 GLU A 123 -2.46 -145.24 REMARK 500 SER A 134 -92.22 -62.92 REMARK 500 SER A 135 -117.15 62.73 REMARK 500 THR A 136 115.89 72.16 REMARK 500 GLU A 137 83.49 -44.36 REMARK 500 ALA A 138 -33.10 168.48 REMARK 500 TRP A 164 -108.10 -41.81 REMARK 500 LYS A 165 -37.58 179.98 REMARK 500 TRP A 167 -75.79 -8.71 REMARK 500 PRO A 168 97.74 -62.71 REMARK 500 HIS A 174 177.92 -57.68 REMARK 500 ASP A 180 15.59 48.23 REMARK 500 CYS A 181 -115.83 -78.09 REMARK 500 THR A 182 100.89 95.07 REMARK 500 ASP A 183 173.05 76.22 REMARK 500 VAL A 185 91.56 -177.88 REMARK 500 PRO A 192 -130.06 -53.72 REMARK 500 VAL A 194 -83.95 157.36 REMARK 500 HIS A 198 -94.18 28.63 REMARK 500 SER A 199 16.95 154.34 REMARK 500 PHE A 200 98.69 50.32 REMARK 500 ASN A 201 -74.73 -76.96 REMARK 500 LEU A 203 136.11 -17.01 REMARK 500 VAL A 208 -162.77 -105.06 REMARK 500 LYS A 210 -25.68 -37.71 REMARK 500 ILE A 213 -104.28 -35.78 REMARK 500 GLU A 214 -63.04 -7.07 REMARK 500 ALA A 215 -80.95 -51.17 REMARK 500 ASP A 226 98.41 -170.32 REMARK 500 ASN A 229 116.59 65.38 REMARK 500 ALA A 230 -91.22 -90.83 REMARK 500 LEU A 233 -23.87 -177.48 REMARK 500 LYS A 234 94.54 163.34 REMARK 500 ASN A 235 65.60 -104.83 REMARK 500 HIS A 236 128.73 -177.31 REMARK 500 GLN A 237 -109.86 -152.32 REMARK 500 ASP A 254 113.43 -165.70 REMARK 500 GLN A 255 -59.88 56.76 REMARK 500 HIS A 258 110.43 -30.00 REMARK 500 ASP A 263 134.81 2.12 REMARK 500 SER A 275 26.61 -70.80 REMARK 500 THR A 276 -81.03 36.73 REMARK 500 ASN A 277 -16.72 -48.80 REMARK 500 CYS A 284 -85.06 -62.80 REMARK 500 ARG A 285 -159.69 -103.06 REMARK 500 ILE A 286 133.32 -178.59 REMARK 500 ASN A 287 -71.09 -36.62 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BFS RELATED DB: PDB REMARK 900 STRUCTURE OF NF-KB P50 HOMODIMER BOUND TO A KB SITE REMARK 900 RELATED ID: 1IKN RELATED DB: PDB REMARK 900 IKAPPABALPHA/NF-KAPPAB COMPLEX REMARK 900 RELATED ID: 1LE5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO AN IFNB-KB REMARK 900 RELATED ID: 1LE9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO THEIG/HIV-KB SITI REMARK 900 RELATED ID: 1LEI RELATED DB: PDB REMARK 900 THE KB DNA SEQUENCE FROM THE HLV-LTR FUNCTIONS AS ANALLOSTERIC REMARK 900 REGULATOR OF HIV TRANSCRIPTION REMARK 900 RELATED ID: 1NFK RELATED DB: PDB REMARK 900 STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B ( NF-KB) P50 HOMODIMER REMARK 900 RELATED ID: 1OOA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NF-KB(P50)2 COMPLEXED TO A HIGH-AFFINITY RNA REMARK 900 APTAMER REMARK 900 RELATED ID: 1U36 RELATED DB: PDB REMARK 900 CRYSTAL STUCTURE OF WLAC MUTANT OF DIMERISATION DOMAIN OFNF-KB P50 REMARK 900 TRANSCRIPTION FACTOR REMARK 900 RELATED ID: 1U3J RELATED DB: PDB REMARK 900 CRYSTAL STUCTURE OF MLAV MUTANT OF DIMERISATION DOMAIN OFNF-KB P50 REMARK 900 TRANSCRIPTION FACTOR REMARK 900 RELATED ID: 1U3Y RELATED DB: PDB REMARK 900 CRYSTAL STUCTURE OF ILAC MUTANT OF DIMERISATION DOMAIN OFNF-KB P50 REMARK 900 TRANSCRIPTION FACTOR REMARK 900 RELATED ID: 1U3Z RELATED DB: PDB REMARK 900 CRYSTAL STUCTURE OF MLAC MUTANT OF DIMERISATION DOMAIN OFNF-KB P50 REMARK 900 TRANSCRIPTION FACTOR REMARK 900 RELATED ID: 1U41 RELATED DB: PDB REMARK 900 CRYSTAL STUCTURE OF YLGV MUTANT OF DIMERISATION DOMAIN OFNF-KB P50 REMARK 900 TRANSCRIPTION FACTOR REMARK 900 RELATED ID: 1U42 RELATED DB: PDB REMARK 900 CRYSTAL STUCTURE OF MLAM MUTANT OF DIMERISATION DOMAIN OFNF-KB P50 REMARK 900 TRANSCRIPTION FACTOR REMARK 900 RELATED ID: 1VKX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE REMARK 900 IMMUNOGLOBULIN KB DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1ZK9 RELATED DB: PDB REMARK 900 NF-KB RELB FORMS AN INTERTWINED HOMODIMER REMARK 900 RELATED ID: 1ZKA RELATED DB: PDB REMARK 900 NF-KB RELB FORMS AN INTERTWINED HOMODIMER, Y300S MUTANT DBREF 2V2T A 91 378 UNP Q04863 RELB_MOUSE 91 378 DBREF 2V2T B 38 363 UNP P25799 NFKB1_MOUSE 38 363 DBREF 2V2T C 2 12 PDB 2V2T 2V2T 2 12 DBREF 2V2T D 13 23 PDB 2V2T 2V2T 13 23 SEQRES 1 A 288 LEU GLY ARG LEU VAL SER PRO GLY PRO CYS PRO ARG PRO SEQRES 2 A 288 TYR LEU VAL ILE THR GLU GLN PRO LYS GLN ARG GLY MET SEQRES 3 A 288 ARG PHE ARG TYR GLU CYS GLU GLY ARG SER ALA GLY SER SEQRES 4 A 288 ILE LEU GLY GLU SER SER THR GLU ALA SER LYS THR GLN SEQRES 5 A 288 PRO ALA ILE GLU LEU ARG ASP CYS GLY GLY LEU ARG GLU SEQRES 6 A 288 VAL GLU VAL THR ALA CYS LEU VAL TRP LYS ASP TRP PRO SEQRES 7 A 288 HIS ARG VAL HIS PRO HIS SER LEU VAL GLY LYS ASP CYS SEQRES 8 A 288 THR ASP GLY VAL CYS ARG VAL ARG LEU ARG PRO HIS VAL SEQRES 9 A 288 SER PRO ARG HIS SER PHE ASN ASN LEU GLY ILE GLN CYS SEQRES 10 A 288 VAL ARG LYS LYS GLU ILE GLU ALA ALA ILE GLU ARG LYS SEQRES 11 A 288 ILE GLN LEU GLY ILE ASP PRO TYR ASN ALA GLY SER LEU SEQRES 12 A 288 LYS ASN HIS GLN GLU VAL ASP MET ASN VAL VAL ARG ILE SEQRES 13 A 288 CYS PHE GLN ALA SER TYR ARG ASP GLN GLN GLY HIS LEU SEQRES 14 A 288 HIS ARG MET ASP PRO ILE LEU SER GLU PRO VAL TYR ASP SEQRES 15 A 288 LYS LYS SER THR ASN THR SER GLU LEU ARG ILE CYS ARG SEQRES 16 A 288 ILE ASN LYS GLU SER GLY PRO CYS THR GLY GLY GLU GLU SEQRES 17 A 288 LEU TYR LEU LEU CYS ASP LYS VAL GLN LYS GLU ASP ILE SEQRES 18 A 288 SER VAL VAL PHE SER THR ALA SER TRP GLU GLY ARG ALA SEQRES 19 A 288 ASP PHE SER GLN ALA ASP VAL HIS ARG GLN ILE ALA ILE SEQRES 20 A 288 VAL PHE LYS THR PRO PRO TYR GLU ASP LEU GLU ILE SER SEQRES 21 A 288 GLU PRO VAL THR VAL ASN VAL PHE LEU GLN ARG LEU THR SEQRES 22 A 288 ASP GLY VAL CYS SER GLU PRO LEU PRO PHE THR TYR LEU SEQRES 23 A 288 PRO ARG SEQRES 1 B 326 ASP GLY PRO TYR LEU GLN ILE LEU GLU GLN PRO LYS GLN SEQRES 2 B 326 ARG GLY PHE ARG PHE ARG TYR VAL CYS GLU GLY PRO SER SEQRES 3 B 326 HIS GLY GLY LEU PRO GLY ALA SER SER GLU LYS ASN LYS SEQRES 4 B 326 LYS SER TYR PRO GLN VAL LYS ILE CYS ASN TYR VAL GLY SEQRES 5 B 326 PRO ALA LYS VAL ILE VAL GLN LEU VAL THR ASN GLY LYS SEQRES 6 B 326 ASN ILE HIS LEU HIS ALA HIS SER LEU VAL GLY LYS HIS SEQRES 7 B 326 CYS GLU ASP GLY VAL CYS THR VAL THR ALA GLY PRO LYS SEQRES 8 B 326 ASP MET VAL VAL GLY PHE ALA ASN LEU GLY ILE LEU HIS SEQRES 9 B 326 VAL THR LYS LYS LYS VAL PHE GLU THR LEU GLU ALA ARG SEQRES 10 B 326 MET THR GLU ALA CYS ILE ARG GLY TYR ASN PRO GLY LEU SEQRES 11 B 326 LEU VAL HIS SER ASP LEU ALA TYR LEU GLN ALA GLU GLY SEQRES 12 B 326 GLY GLY ASP ARG GLN LEU THR ASP ARG GLU LYS GLU ILE SEQRES 13 B 326 ILE ARG GLN ALA ALA VAL GLN GLN THR LYS GLU MET ASP SEQRES 14 B 326 LEU SER VAL VAL ARG LEU MET PHE THR ALA PHE LEU PRO SEQRES 15 B 326 ASP SER THR GLY SER PHE THR ARG ARG LEU GLU PRO VAL SEQRES 16 B 326 VAL SER ASP ALA ILE TYR ASP SER LYS ALA PRO ASN ALA SEQRES 17 B 326 SER ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA GLY SEQRES 18 B 326 CYS VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS ASP SEQRES 19 B 326 LYS VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR GLU SEQRES 20 B 326 GLU GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY ASP SEQRES 21 B 326 PHE SER PRO THR ASP VAL HIS ARG GLN PHE ALA ILE VAL SEQRES 22 B 326 PHE LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR LYS SEQRES 23 B 326 PRO ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER ASP SEQRES 24 B 326 LEU GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR PRO SEQRES 25 B 326 GLU ILE LYS ASP LYS GLU GLU VAL GLN ARG LYS ARG GLN SEQRES 26 B 326 LYS SEQRES 1 C 11 DC DG DG DG DA DA DT DT DC DC DC SEQRES 1 D 11 DC DG DG DG DA DA DT DT DC DC DC FORMUL 5 HOH *34(H2 O) HELIX 1 1 CYS A 122 GLY A 124 5 3 HELIX 2 2 GLU A 212 LEU A 223 1 12 HELIX 3 3 SER A 275 SER A 279 5 5 HELIX 4 4 SER A 327 ALA A 329 5 3 HELIX 5 5 TYR B 57 GLY B 61 5 5 HELIX 6 6 LYS B 146 CYS B 159 1 14 HELIX 7 7 ARG B 189 GLU B 204 1 16 SHEET 1 AA 2 TYR A 104 ILE A 107 0 SHEET 2 AA 2 ILE A 145 ARG A 148 -1 O GLU A 146 N VAL A 106 SHEET 1 AB 3 ARG A 119 TYR A 120 0 SHEET 2 AB 3 GLY A 204 CYS A 207 1 O ILE A 205 N ARG A 119 SHEET 3 AB 3 SER A 175 VAL A 177 -1 O SER A 175 N GLN A 206 SHEET 1 AC 4 CYS A 186 LEU A 190 0 SHEET 2 AC 4 VAL A 156 ALA A 160 -1 O VAL A 156 N LEU A 190 SHEET 3 AC 4 ALA A 250 TYR A 252 -1 O SER A 251 N GLU A 157 SHEET 4 AC 4 HIS A 260 ARG A 261 -1 O HIS A 260 N TYR A 252 SHEET 1 AD 2 VAL A 243 VAL A 244 0 SHEET 2 AD 2 VAL A 270 TYR A 271 -1 O VAL A 270 N VAL A 244 SHEET 1 AE 3 GLU A 298 LEU A 302 0 SHEET 2 AE 3 ALA A 336 LYS A 340 -1 O ILE A 337 N LEU A 301 SHEET 3 AE 3 VAL A 331 HIS A 332 -1 N HIS A 332 O ALA A 336 SHEET 1 AF 3 GLU A 321 ARG A 323 0 SHEET 2 AF 3 ILE A 311 SER A 316 -1 O PHE A 315 N GLY A 322 SHEET 3 AF 3 VAL A 357 ARG A 361 -1 O PHE A 358 N VAL A 314 SHEET 1 BA 3 ILE B 44 GLU B 46 0 SHEET 2 BA 3 GLN B 81 LYS B 83 -1 O GLN B 81 N LEU B 45 SHEET 3 BA 3 VAL B 131 GLY B 133 -1 O VAL B 132 N VAL B 82 SHEET 1 BB 5 ARG B 51 PHE B 53 0 SHEET 2 BB 5 VAL B 232 ASP B 239 1 O TYR B 238 N PHE B 53 SHEET 3 BB 5 VAL B 209 PRO B 219 -1 O VAL B 210 N ILE B 237 SHEET 4 BB 5 LYS B 92 VAL B 98 -1 O LYS B 92 N PHE B 217 SHEET 5 BB 5 VAL B 120 THR B 124 -1 O CYS B 121 N VAL B 95 SHEET 1 BC 4 ARG B 51 PHE B 53 0 SHEET 2 BC 4 VAL B 232 ASP B 239 1 O TYR B 238 N PHE B 53 SHEET 3 BC 4 VAL B 209 PRO B 219 -1 O VAL B 210 N ILE B 237 SHEET 4 BC 4 PHE B 225 ARG B 228 -1 N THR B 226 O LEU B 218 SHEET 1 BD 2 LEU B 111 VAL B 112 0 SHEET 2 BD 2 GLY B 138 ILE B 139 -1 O GLY B 138 N VAL B 112 SHEET 1 BE 5 ALA B 257 CYS B 259 0 SHEET 2 BE 5 LYS B 343 TYR B 348 1 O LEU B 346 N GLY B 258 SHEET 3 BE 5 ALA B 325 ARG B 333 -1 O ALA B 325 N TYR B 347 SHEET 4 BE 5 ILE B 278 GLU B 284 -1 O GLN B 279 N ARG B 332 SHEET 5 BE 5 TRP B 292 PHE B 295 -1 O TRP B 292 N GLU B 284 SHEET 1 BF 3 GLU B 265 LEU B 269 0 SHEET 2 BF 3 ALA B 308 LYS B 312 -1 O ILE B 309 N LEU B 268 SHEET 3 BF 3 VAL B 303 HIS B 304 -1 N HIS B 304 O ALA B 308 SSBOND 1 CYS A 181 CYS A 186 1555 1555 2.88 SSBOND 2 CYS B 116 CYS B 121 1555 1555 2.03 CRYST1 91.440 91.440 419.970 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010936 0.006314 0.000000 0.00000 SCALE2 0.000000 0.012628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002381 0.00000