data_2V5N # _entry.id 2V5N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V5N PDBE EBI-33101 WWPDB D_1290033101 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1E6F unspecified 'HUMAN MIR-RECEPTOR, REPEAT 11' PDB 1GP0 unspecified 'STRUCTURE OF A FUNCTIONAL IGF2R FRAGMENT DETERMINED FROM ANOMALOUS SCATTERING OF SULPHUR' PDB 1GP3 unspecified 'STRUCTURE OF A FUNCTIONAL IGF2R FRAGMENT DETERMINED FROM ANOMALOUS SCATTERING OF SULPHUR' PDB 1GQB unspecified 'HUMAN MIR-RECEPTOR, REPEAT 11' PDB 1JPL unspecified 'GGA3 VHS DOMAIN COMPLEXED WITH C-TERMINAL PEPTIDE FROMCATION-INDEPENDENT MANNOSE 6- PHOSPHATE RECEPTOR' PDB 1JWG unspecified 'VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH CATION-INDEPENDENTM6PR C-TERMINAL PEPTIDE' PDB 1LF8 unspecified 'COMPLEX OF GGA3-VHS DOMAIN AND CI-MPR C -TERMINALPHOSPHOPEPTIDE' PDB 2CNJ unspecified 'NMR STUDIES ON THE INTERACTION OF INSULIN- GROWTH FACTOR II (IGF-II) WITH IGF2R DOMAIN 11' PDB 2V5O unspecified . PDB 2V5P unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V5N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-07-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brown, J.' 1 'Delaine, C.' 2 'Zaccheo, O.J.' 3 'Siebold, C.' 4 'Gilbert, R.J.' 5 'van Boxel, G.' 6 'Denley, A.' 7 'Wallace, J.C.' 8 'Hassan, A.B.' 9 'Forbes, B.E.' 10 'Jones, E.Y.' 11 # _citation.id primary _citation.title 'Structure and Functional Analysis of the Igf-II/Igf2R Interaction' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 27 _citation.page_first 265 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18046459 _citation.pdbx_database_id_DOI 10.1038/SJ.EMBOJ.7601938 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Brown, J.' 1 ? primary 'Delaine, C.' 2 ? primary 'Zaccheo, O.J.' 3 ? primary 'Siebold, C.' 4 ? primary 'Gilbert, R.J.' 5 ? primary 'Van Boxel, G.' 6 ? primary 'Denley, A.' 7 ? primary 'Wallace, J.C.' 8 ? primary 'Hassan, A.B.' 9 ? primary 'Forbes, B.E.' 10 ? primary 'Jones, E.Y.' 11 ? # _cell.entry_id 2V5N _cell.length_a 64.793 _cell.length_b 64.793 _cell.length_c 269.569 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V5N _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR' 32980.461 1 ? ? 'DOMAINS 11 AND 12, RESIDUES 1508-1799' ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;INSULIN-LIKE GROWTH FACTOR II RECEPTOR, CI MAN-6-P RECEPTOR, CI-MPR, M6PR, INSULIN-LIKE GROWTH FACTOR 2 RECEPTOR, IGF-II RECEPTOR, M6P/IGF2 RECEPTOR, M6P/IGF2R, 300 KDA MANNOSE 6-PHOSPHATE RECEPTOR, MPR 300, MPR300, CD222 ANTIGEN ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)KSNEHDDCQVTNPSTGHLFDLSSLSGRAGFTAAYSEKGLVY(MSE)SICGENENCPPGVGACFGQTRISVGKANK RLRYVDQVLQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRP(MSE)LISLDKQTCTLFFSWHTPLACEQATECSVR NGSSIVDLSPLIHRTGGYEAYDESEDDASDTNPDFYINICQPLNP(MSE)HAVPCPAGAAVCKVPIDGPPIDIGRVAGPP ILNPIANEIYLNFESSTPCLADKHFNYTSLIAFHCKRGVS(MSE)GTPKLLRTSECDFVFEWETPVVCPDEVKHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKSNEHDDCQVTNPSTGHLFDLSSLSGRAGFTAAYSEKGLVYMSICGENENCPPGVGACFGQTRISVGKANKRLRYVDQV LQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLACEQATECSVRNGSSIVDLSPLI HRTGGYEAYDESEDDASDTNPDFYINICQPLNPMHAVPCPAGAAVCKVPIDGPPIDIGRVAGPPILNPIANEIYLNFESS TPCLADKHFNYTSLIAFHCKRGVSMGTPKLLRTSECDFVFEWETPVVCPDEVKHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LYS n 1 3 SER n 1 4 ASN n 1 5 GLU n 1 6 HIS n 1 7 ASP n 1 8 ASP n 1 9 CYS n 1 10 GLN n 1 11 VAL n 1 12 THR n 1 13 ASN n 1 14 PRO n 1 15 SER n 1 16 THR n 1 17 GLY n 1 18 HIS n 1 19 LEU n 1 20 PHE n 1 21 ASP n 1 22 LEU n 1 23 SER n 1 24 SER n 1 25 LEU n 1 26 SER n 1 27 GLY n 1 28 ARG n 1 29 ALA n 1 30 GLY n 1 31 PHE n 1 32 THR n 1 33 ALA n 1 34 ALA n 1 35 TYR n 1 36 SER n 1 37 GLU n 1 38 LYS n 1 39 GLY n 1 40 LEU n 1 41 VAL n 1 42 TYR n 1 43 MSE n 1 44 SER n 1 45 ILE n 1 46 CYS n 1 47 GLY n 1 48 GLU n 1 49 ASN n 1 50 GLU n 1 51 ASN n 1 52 CYS n 1 53 PRO n 1 54 PRO n 1 55 GLY n 1 56 VAL n 1 57 GLY n 1 58 ALA n 1 59 CYS n 1 60 PHE n 1 61 GLY n 1 62 GLN n 1 63 THR n 1 64 ARG n 1 65 ILE n 1 66 SER n 1 67 VAL n 1 68 GLY n 1 69 LYS n 1 70 ALA n 1 71 ASN n 1 72 LYS n 1 73 ARG n 1 74 LEU n 1 75 ARG n 1 76 TYR n 1 77 VAL n 1 78 ASP n 1 79 GLN n 1 80 VAL n 1 81 LEU n 1 82 GLN n 1 83 LEU n 1 84 VAL n 1 85 TYR n 1 86 LYS n 1 87 ASP n 1 88 GLY n 1 89 SER n 1 90 PRO n 1 91 CYS n 1 92 PRO n 1 93 SER n 1 94 LYS n 1 95 SER n 1 96 GLY n 1 97 LEU n 1 98 SER n 1 99 TYR n 1 100 LYS n 1 101 SER n 1 102 VAL n 1 103 ILE n 1 104 SER n 1 105 PHE n 1 106 VAL n 1 107 CYS n 1 108 ARG n 1 109 PRO n 1 110 GLU n 1 111 ALA n 1 112 GLY n 1 113 PRO n 1 114 THR n 1 115 ASN n 1 116 ARG n 1 117 PRO n 1 118 MSE n 1 119 LEU n 1 120 ILE n 1 121 SER n 1 122 LEU n 1 123 ASP n 1 124 LYS n 1 125 GLN n 1 126 THR n 1 127 CYS n 1 128 THR n 1 129 LEU n 1 130 PHE n 1 131 PHE n 1 132 SER n 1 133 TRP n 1 134 HIS n 1 135 THR n 1 136 PRO n 1 137 LEU n 1 138 ALA n 1 139 CYS n 1 140 GLU n 1 141 GLN n 1 142 ALA n 1 143 THR n 1 144 GLU n 1 145 CYS n 1 146 SER n 1 147 VAL n 1 148 ARG n 1 149 ASN n 1 150 GLY n 1 151 SER n 1 152 SER n 1 153 ILE n 1 154 VAL n 1 155 ASP n 1 156 LEU n 1 157 SER n 1 158 PRO n 1 159 LEU n 1 160 ILE n 1 161 HIS n 1 162 ARG n 1 163 THR n 1 164 GLY n 1 165 GLY n 1 166 TYR n 1 167 GLU n 1 168 ALA n 1 169 TYR n 1 170 ASP n 1 171 GLU n 1 172 SER n 1 173 GLU n 1 174 ASP n 1 175 ASP n 1 176 ALA n 1 177 SER n 1 178 ASP n 1 179 THR n 1 180 ASN n 1 181 PRO n 1 182 ASP n 1 183 PHE n 1 184 TYR n 1 185 ILE n 1 186 ASN n 1 187 ILE n 1 188 CYS n 1 189 GLN n 1 190 PRO n 1 191 LEU n 1 192 ASN n 1 193 PRO n 1 194 MSE n 1 195 HIS n 1 196 ALA n 1 197 VAL n 1 198 PRO n 1 199 CYS n 1 200 PRO n 1 201 ALA n 1 202 GLY n 1 203 ALA n 1 204 ALA n 1 205 VAL n 1 206 CYS n 1 207 LYS n 1 208 VAL n 1 209 PRO n 1 210 ILE n 1 211 ASP n 1 212 GLY n 1 213 PRO n 1 214 PRO n 1 215 ILE n 1 216 ASP n 1 217 ILE n 1 218 GLY n 1 219 ARG n 1 220 VAL n 1 221 ALA n 1 222 GLY n 1 223 PRO n 1 224 PRO n 1 225 ILE n 1 226 LEU n 1 227 ASN n 1 228 PRO n 1 229 ILE n 1 230 ALA n 1 231 ASN n 1 232 GLU n 1 233 ILE n 1 234 TYR n 1 235 LEU n 1 236 ASN n 1 237 PHE n 1 238 GLU n 1 239 SER n 1 240 SER n 1 241 THR n 1 242 PRO n 1 243 CYS n 1 244 LEU n 1 245 ALA n 1 246 ASP n 1 247 LYS n 1 248 HIS n 1 249 PHE n 1 250 ASN n 1 251 TYR n 1 252 THR n 1 253 SER n 1 254 LEU n 1 255 ILE n 1 256 ALA n 1 257 PHE n 1 258 HIS n 1 259 CYS n 1 260 LYS n 1 261 ARG n 1 262 GLY n 1 263 VAL n 1 264 SER n 1 265 MSE n 1 266 GLY n 1 267 THR n 1 268 PRO n 1 269 LYS n 1 270 LEU n 1 271 LEU n 1 272 ARG n 1 273 THR n 1 274 SER n 1 275 GLU n 1 276 CYS n 1 277 ASP n 1 278 PHE n 1 279 VAL n 1 280 PHE n 1 281 GLU n 1 282 TRP n 1 283 GLU n 1 284 THR n 1 285 PRO n 1 286 VAL n 1 287 VAL n 1 288 CYS n 1 289 PRO n 1 290 ASP n 1 291 GLU n 1 292 VAL n 1 293 LYS n 1 294 HIS n 1 295 HIS n 1 296 HIS n 1 297 HIS n 1 298 HIS n 1 299 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 95661 _entity_src_gen.pdbx_gene_src_organ PLACENTA _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cricetulus griseus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10029 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant 'LECR 3.2.8.1' _entity_src_gen.pdbx_host_org_cell_line CHO _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PEE14 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP MPRI_HUMAN 1 ? ? P11717 ? 2 PDB 2V5N 1 ? ? 2V5N ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V5N A 1 ? 292 ? P11717 1508 ? 1799 ? 1508 1799 2 2 2V5N A 293 ? 299 ? 2V5N 1800 ? 1806 ? 1800 1806 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2V5N _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 196 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P11717 _struct_ref_seq_dif.db_mon_id GLY _struct_ref_seq_dif.pdbx_seq_db_seq_num 1703 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 1703 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V5N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 51 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M POTASSIUM SODIUM TARTRATE, 20% (W/V) PEG 3350, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-09-24 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9789 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength 0.9789 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V5N _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.00 _reflns.d_resolution_high 3.20 _reflns.number_obs 6123 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 19.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.20 _reflns_shell.d_res_low 3.30 _reflns_shell.percent_possible_all 96.6 _reflns_shell.Rmerge_I_obs 0.74 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.90 _reflns_shell.pdbx_redundancy 19.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V5N _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 5495 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.73 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.259 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.253 _refine.ls_R_factor_R_free 0.317 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.700 _refine.ls_number_reflns_R_free 590 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.908 _refine.correlation_coeff_Fo_to_Fc_free 0.867 _refine.B_iso_mean 97.56 _refine.aniso_B[1][1] 4.30000 _refine.aniso_B[2][2] 4.30000 _refine.aniso_B[3][3] -6.45000 _refine.aniso_B[1][2] 2.15000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.642 _refine.overall_SU_ML 0.505 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 64.678 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2017 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2045 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 19.73 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 2109 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.132 1.986 ? 2887 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.207 5.000 ? 269 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.037 23.896 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.264 15.000 ? 306 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.327 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.072 0.200 ? 325 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1625 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.202 0.200 ? 834 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.308 0.200 ? 1422 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.142 0.200 ? 67 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.194 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.247 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.28 _refine_ls_shell.number_reflns_R_work 373 _refine_ls_shell.R_factor_R_work 0.3480 _refine_ls_shell.percent_reflns_obs 97.66 _refine_ls_shell.R_factor_R_free 0.3880 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2V5N _struct.title 'STRUCTURE OF HUMAN IGF2R DOMAINS 11-12' _struct.pdbx_descriptor 'CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V5N _struct_keywords.pdbx_keywords RECEPTOR _struct_keywords.text ;CATION INDEPENDENT MANNOSE 6-PHOSPHATE, MEMBRANE, RECEPTOR, LYSOSOME, TRANSPORT, BETA BARREL, PHOSPHORYLATION, FIBRONECTIN TYPE II, INSULIN-LIKE GROWTH FACTOR, GLYCOPROTEIN, TRANSMEMBRANE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 23 ? SER A 26 ? SER A 1530 SER A 1533 5 ? 4 HELX_P HELX_P2 2 PRO A 136 ? CYS A 139 ? PRO A 1643 CYS A 1646 5 ? 4 HELX_P HELX_P3 3 SER A 157 ? LEU A 159 ? SER A 1664 LEU A 1666 5 ? 3 HELX_P HELX_P4 4 PRO A 285 ? CYS A 288 ? PRO A 1792 CYS A 1795 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 46 SG ? ? A CYS 1516 A CYS 1553 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 59 SG ? ? A CYS 1559 A CYS 1566 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf3 disulf ? ? A CYS 91 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 1598 A CYS 1634 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf4 disulf ? ? A CYS 107 SG ? ? ? 1_555 A CYS 139 SG ? ? A CYS 1614 A CYS 1646 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf5 disulf ? ? A CYS 145 SG ? ? ? 1_555 A CYS 188 SG ? ? A CYS 1652 A CYS 1695 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf6 disulf ? ? A CYS 199 SG ? ? ? 1_555 A CYS 206 SG ? ? A CYS 1706 A CYS 1713 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf7 disulf ? ? A CYS 243 SG ? ? ? 1_555 A CYS 276 SG ? ? A CYS 1750 A CYS 1783 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf8 disulf ? ? A CYS 259 SG ? ? ? 1_555 A CYS 288 SG ? ? A CYS 1766 A CYS 1795 1_555 ? ? ? ? ? ? ? 2.036 ? ? covale1 covale both ? A TYR 42 C ? ? ? 1_555 A MSE 43 N ? ? A TYR 1549 A MSE 1550 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A MSE 43 C ? ? ? 1_555 A SER 44 N ? ? A MSE 1550 A SER 1551 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A PRO 117 C ? ? ? 1_555 A MSE 118 N ? ? A PRO 1624 A MSE 1625 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MSE 118 C ? ? ? 1_555 A LEU 119 N ? ? A MSE 1625 A LEU 1626 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale one ? A ASN 149 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 1656 A NAG 2797 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale6 covale both ? A PRO 193 C ? ? ? 1_555 A MSE 194 N ? ? A PRO 1700 A MSE 1701 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? A MSE 194 C ? ? ? 1_555 A HIS 195 N ? ? A MSE 1701 A HIS 1702 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale8 covale one ? A ASN 250 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 1757 A NAG 2798 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale9 covale both ? A SER 264 C ? ? ? 1_555 A MSE 265 N ? ? A SER 1771 A MSE 1772 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale10 covale both ? A MSE 265 C ? ? ? 1_555 A GLY 266 N ? ? A MSE 1772 A GLY 1773 1_555 ? ? ? ? ? ? ? 1.329 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 4 ? AC ? 5 ? AD ? 2 ? AE ? 4 ? AF ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? parallel AC 4 5 ? anti-parallel AD 1 2 ? anti-parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AF 1 2 ? anti-parallel AF 2 3 ? anti-parallel AF 3 4 ? parallel AF 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLN A 10 ? THR A 12 ? GLN A 1517 THR A 1519 AA 2 LEU A 19 ? ASP A 21 ? LEU A 1526 ASP A 1528 AB 1 PHE A 31 ? TYR A 35 ? PHE A 1538 TYR A 1542 AB 2 GLY A 39 ? MSE A 43 ? GLY A 1546 MSE A 1550 AB 3 VAL A 56 ? PHE A 60 ? VAL A 1563 PHE A 1567 AB 4 ILE A 65 ? LYS A 69 ? ILE A 1572 LYS A 1576 AC 1 LEU A 74 ? VAL A 77 ? LEU A 1581 VAL A 1584 AC 2 VAL A 80 ? TYR A 85 ? VAL A 1587 TYR A 1592 AC 3 LYS A 100 ? CYS A 107 ? LYS A 1607 CYS A 1614 AC 4 THR A 128 ? THR A 135 ? THR A 1635 THR A 1642 AC 5 PRO A 117 ? ASP A 123 ? PRO A 1624 ASP A 1630 AD 1 SER A 146 ? ASN A 149 ? SER A 1653 ASN A 1656 AD 2 SER A 152 ? ASP A 155 ? SER A 1659 ASP A 1662 AE 1 TYR A 166 ? ALA A 168 ? TYR A 1673 ALA A 1675 AE 2 PHE A 183 ? ILE A 185 ? PHE A 1690 ILE A 1692 AE 3 VAL A 205 ? LYS A 207 ? VAL A 1712 LYS A 1714 AE 4 ILE A 215 ? GLY A 218 ? ILE A 1722 GLY A 1725 AF 1 ILE A 225 ? ASN A 227 ? ILE A 1732 ASN A 1734 AF 2 GLU A 232 ? PHE A 237 ? GLU A 1739 PHE A 1744 AF 3 SER A 253 ? CYS A 259 ? SER A 1760 CYS A 1766 AF 4 PHE A 278 ? THR A 284 ? PHE A 1785 THR A 1791 AF 5 PRO A 268 ? ARG A 272 ? PRO A 1775 ARG A 1779 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 11 ? N VAL A 1518 O PHE A 20 ? O PHE A 1527 AB 1 2 N TYR A 35 ? N TYR A 1542 O GLY A 39 ? O GLY A 1546 AB 2 3 N TYR A 42 ? N TYR A 1549 O CYS A 59 ? O CYS A 1566 AB 3 4 O ALA A 58 ? O ALA A 1565 N VAL A 67 ? N VAL A 1574 AC 1 2 N VAL A 77 ? N VAL A 1584 O VAL A 80 ? O VAL A 1587 AC 2 3 N LEU A 83 ? N LEU A 1590 O ILE A 103 ? O ILE A 1610 AC 3 4 N VAL A 102 ? N VAL A 1609 O LEU A 129 ? O LEU A 1636 AC 4 5 N SER A 132 ? N SER A 1639 O MSE A 118 ? O MSE A 1625 AD 1 2 N ASN A 149 ? N ASN A 1656 O SER A 152 ? O SER A 1659 AE 1 2 N ALA A 168 ? N ALA A 1675 O PHE A 183 ? O PHE A 1690 AE 2 3 N TYR A 184 ? N TYR A 1691 O CYS A 206 ? O CYS A 1713 AE 3 4 N LYS A 207 ? N LYS A 1714 O ILE A 215 ? O ILE A 1722 AF 1 2 N ILE A 225 ? N ILE A 1732 O TYR A 234 ? O TYR A 1741 AF 2 3 N PHE A 237 ? N PHE A 1744 O SER A 253 ? O SER A 1760 AF 3 4 N LEU A 254 ? N LEU A 1761 O PHE A 278 ? O PHE A 1785 AF 4 5 N GLU A 281 ? N GLU A 1788 O LYS A 269 ? O LYS A 1776 # _database_PDB_matrix.entry_id 2V5N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V5N _atom_sites.fract_transf_matrix[1][1] 0.015434 _atom_sites.fract_transf_matrix[1][2] 0.008911 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017821 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003710 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1508 ? ? ? A . n A 1 2 LYS 2 1509 ? ? ? A . n A 1 3 SER 3 1510 ? ? ? A . n A 1 4 ASN 4 1511 ? ? ? A . n A 1 5 GLU 5 1512 ? ? ? A . n A 1 6 HIS 6 1513 ? ? ? A . n A 1 7 ASP 7 1514 ? ? ? A . n A 1 8 ASP 8 1515 ? ? ? A . n A 1 9 CYS 9 1516 1516 CYS CYS A . n A 1 10 GLN 10 1517 1517 GLN GLN A . n A 1 11 VAL 11 1518 1518 VAL VAL A . n A 1 12 THR 12 1519 1519 THR THR A . n A 1 13 ASN 13 1520 1520 ASN ASN A . n A 1 14 PRO 14 1521 1521 PRO PRO A . n A 1 15 SER 15 1522 1522 SER SER A . n A 1 16 THR 16 1523 1523 THR THR A . n A 1 17 GLY 17 1524 1524 GLY GLY A . n A 1 18 HIS 18 1525 1525 HIS HIS A . n A 1 19 LEU 19 1526 1526 LEU LEU A . n A 1 20 PHE 20 1527 1527 PHE PHE A . n A 1 21 ASP 21 1528 1528 ASP ASP A . n A 1 22 LEU 22 1529 1529 LEU LEU A . n A 1 23 SER 23 1530 1530 SER SER A . n A 1 24 SER 24 1531 1531 SER SER A . n A 1 25 LEU 25 1532 1532 LEU LEU A . n A 1 26 SER 26 1533 1533 SER SER A . n A 1 27 GLY 27 1534 1534 GLY GLY A . n A 1 28 ARG 28 1535 1535 ARG ARG A . n A 1 29 ALA 29 1536 1536 ALA ALA A . n A 1 30 GLY 30 1537 1537 GLY GLY A . n A 1 31 PHE 31 1538 1538 PHE PHE A . n A 1 32 THR 32 1539 1539 THR THR A . n A 1 33 ALA 33 1540 1540 ALA ALA A . n A 1 34 ALA 34 1541 1541 ALA ALA A . n A 1 35 TYR 35 1542 1542 TYR TYR A . n A 1 36 SER 36 1543 1543 SER SER A . n A 1 37 GLU 37 1544 1544 GLU GLU A . n A 1 38 LYS 38 1545 1545 LYS LYS A . n A 1 39 GLY 39 1546 1546 GLY GLY A . n A 1 40 LEU 40 1547 1547 LEU LEU A . n A 1 41 VAL 41 1548 1548 VAL VAL A . n A 1 42 TYR 42 1549 1549 TYR TYR A . n A 1 43 MSE 43 1550 1550 MSE MSE A . n A 1 44 SER 44 1551 1551 SER SER A . n A 1 45 ILE 45 1552 1552 ILE ILE A . n A 1 46 CYS 46 1553 1553 CYS CYS A . n A 1 47 GLY 47 1554 1554 GLY GLY A . n A 1 48 GLU 48 1555 1555 GLU GLU A . n A 1 49 ASN 49 1556 1556 ASN ASN A . n A 1 50 GLU 50 1557 1557 GLU GLU A . n A 1 51 ASN 51 1558 1558 ASN ASN A . n A 1 52 CYS 52 1559 1559 CYS CYS A . n A 1 53 PRO 53 1560 1560 PRO PRO A . n A 1 54 PRO 54 1561 1561 PRO PRO A . n A 1 55 GLY 55 1562 1562 GLY GLY A . n A 1 56 VAL 56 1563 1563 VAL VAL A . n A 1 57 GLY 57 1564 1564 GLY GLY A . n A 1 58 ALA 58 1565 1565 ALA ALA A . n A 1 59 CYS 59 1566 1566 CYS CYS A . n A 1 60 PHE 60 1567 1567 PHE PHE A . n A 1 61 GLY 61 1568 1568 GLY GLY A . n A 1 62 GLN 62 1569 1569 GLN GLN A . n A 1 63 THR 63 1570 1570 THR THR A . n A 1 64 ARG 64 1571 1571 ARG ARG A . n A 1 65 ILE 65 1572 1572 ILE ILE A . n A 1 66 SER 66 1573 1573 SER SER A . n A 1 67 VAL 67 1574 1574 VAL VAL A . n A 1 68 GLY 68 1575 1575 GLY GLY A . n A 1 69 LYS 69 1576 1576 LYS LYS A . n A 1 70 ALA 70 1577 1577 ALA ALA A . n A 1 71 ASN 71 1578 1578 ASN ASN A . n A 1 72 LYS 72 1579 1579 LYS LYS A . n A 1 73 ARG 73 1580 1580 ARG ARG A . n A 1 74 LEU 74 1581 1581 LEU LEU A . n A 1 75 ARG 75 1582 1582 ARG ARG A . n A 1 76 TYR 76 1583 1583 TYR TYR A . n A 1 77 VAL 77 1584 1584 VAL VAL A . n A 1 78 ASP 78 1585 1585 ASP ASP A . n A 1 79 GLN 79 1586 1586 GLN GLN A . n A 1 80 VAL 80 1587 1587 VAL VAL A . n A 1 81 LEU 81 1588 1588 LEU LEU A . n A 1 82 GLN 82 1589 1589 GLN GLN A . n A 1 83 LEU 83 1590 1590 LEU LEU A . n A 1 84 VAL 84 1591 1591 VAL VAL A . n A 1 85 TYR 85 1592 1592 TYR TYR A . n A 1 86 LYS 86 1593 1593 LYS LYS A . n A 1 87 ASP 87 1594 1594 ASP ASP A . n A 1 88 GLY 88 1595 1595 GLY GLY A . n A 1 89 SER 89 1596 1596 SER SER A . n A 1 90 PRO 90 1597 1597 PRO PRO A . n A 1 91 CYS 91 1598 1598 CYS CYS A . n A 1 92 PRO 92 1599 1599 PRO PRO A . n A 1 93 SER 93 1600 1600 SER SER A . n A 1 94 LYS 94 1601 1601 LYS LYS A . n A 1 95 SER 95 1602 1602 SER SER A . n A 1 96 GLY 96 1603 1603 GLY GLY A . n A 1 97 LEU 97 1604 1604 LEU LEU A . n A 1 98 SER 98 1605 1605 SER SER A . n A 1 99 TYR 99 1606 1606 TYR TYR A . n A 1 100 LYS 100 1607 1607 LYS LYS A . n A 1 101 SER 101 1608 1608 SER SER A . n A 1 102 VAL 102 1609 1609 VAL VAL A . n A 1 103 ILE 103 1610 1610 ILE ILE A . n A 1 104 SER 104 1611 1611 SER SER A . n A 1 105 PHE 105 1612 1612 PHE PHE A . n A 1 106 VAL 106 1613 1613 VAL VAL A . n A 1 107 CYS 107 1614 1614 CYS CYS A . n A 1 108 ARG 108 1615 1615 ARG ARG A . n A 1 109 PRO 109 1616 1616 PRO PRO A . n A 1 110 GLU 110 1617 1617 GLU GLU A . n A 1 111 ALA 111 1618 1618 ALA ALA A . n A 1 112 GLY 112 1619 1619 GLY GLY A . n A 1 113 PRO 113 1620 1620 PRO PRO A . n A 1 114 THR 114 1621 1621 THR THR A . n A 1 115 ASN 115 1622 1622 ASN ASN A . n A 1 116 ARG 116 1623 1623 ARG ARG A . n A 1 117 PRO 117 1624 1624 PRO PRO A . n A 1 118 MSE 118 1625 1625 MSE MSE A . n A 1 119 LEU 119 1626 1626 LEU LEU A . n A 1 120 ILE 120 1627 1627 ILE ILE A . n A 1 121 SER 121 1628 1628 SER SER A . n A 1 122 LEU 122 1629 1629 LEU LEU A . n A 1 123 ASP 123 1630 1630 ASP ASP A . n A 1 124 LYS 124 1631 1631 LYS LYS A . n A 1 125 GLN 125 1632 1632 GLN GLN A . n A 1 126 THR 126 1633 1633 THR THR A . n A 1 127 CYS 127 1634 1634 CYS CYS A . n A 1 128 THR 128 1635 1635 THR THR A . n A 1 129 LEU 129 1636 1636 LEU LEU A . n A 1 130 PHE 130 1637 1637 PHE PHE A . n A 1 131 PHE 131 1638 1638 PHE PHE A . n A 1 132 SER 132 1639 1639 SER SER A . n A 1 133 TRP 133 1640 1640 TRP TRP A . n A 1 134 HIS 134 1641 1641 HIS HIS A . n A 1 135 THR 135 1642 1642 THR THR A . n A 1 136 PRO 136 1643 1643 PRO PRO A . n A 1 137 LEU 137 1644 1644 LEU LEU A . n A 1 138 ALA 138 1645 1645 ALA ALA A . n A 1 139 CYS 139 1646 1646 CYS CYS A . n A 1 140 GLU 140 1647 1647 GLU GLU A . n A 1 141 GLN 141 1648 1648 GLN GLN A . n A 1 142 ALA 142 1649 1649 ALA ALA A . n A 1 143 THR 143 1650 1650 THR THR A . n A 1 144 GLU 144 1651 1651 GLU GLU A . n A 1 145 CYS 145 1652 1652 CYS CYS A . n A 1 146 SER 146 1653 1653 SER SER A . n A 1 147 VAL 147 1654 1654 VAL VAL A . n A 1 148 ARG 148 1655 1655 ARG ARG A . n A 1 149 ASN 149 1656 1656 ASN ASN A . n A 1 150 GLY 150 1657 1657 GLY GLY A . n A 1 151 SER 151 1658 1658 SER SER A . n A 1 152 SER 152 1659 1659 SER SER A . n A 1 153 ILE 153 1660 1660 ILE ILE A . n A 1 154 VAL 154 1661 1661 VAL VAL A . n A 1 155 ASP 155 1662 1662 ASP ASP A . n A 1 156 LEU 156 1663 1663 LEU LEU A . n A 1 157 SER 157 1664 1664 SER SER A . n A 1 158 PRO 158 1665 1665 PRO PRO A . n A 1 159 LEU 159 1666 1666 LEU LEU A . n A 1 160 ILE 160 1667 1667 ILE ILE A . n A 1 161 HIS 161 1668 1668 HIS HIS A . n A 1 162 ARG 162 1669 1669 ARG ARG A . n A 1 163 THR 163 1670 1670 THR THR A . n A 1 164 GLY 164 1671 1671 GLY GLY A . n A 1 165 GLY 165 1672 1672 GLY GLY A . n A 1 166 TYR 166 1673 1673 TYR TYR A . n A 1 167 GLU 167 1674 1674 GLU GLU A . n A 1 168 ALA 168 1675 1675 ALA ALA A . n A 1 169 TYR 169 1676 1676 TYR TYR A . n A 1 170 ASP 170 1677 ? ? ? A . n A 1 171 GLU 171 1678 ? ? ? A . n A 1 172 SER 172 1679 ? ? ? A . n A 1 173 GLU 173 1680 ? ? ? A . n A 1 174 ASP 174 1681 ? ? ? A . n A 1 175 ASP 175 1682 ? ? ? A . n A 1 176 ALA 176 1683 ? ? ? A . n A 1 177 SER 177 1684 ? ? ? A . n A 1 178 ASP 178 1685 ? ? ? A . n A 1 179 THR 179 1686 ? ? ? A . n A 1 180 ASN 180 1687 1687 ASN ASN A . n A 1 181 PRO 181 1688 1688 PRO PRO A . n A 1 182 ASP 182 1689 1689 ASP ASP A . n A 1 183 PHE 183 1690 1690 PHE PHE A . n A 1 184 TYR 184 1691 1691 TYR TYR A . n A 1 185 ILE 185 1692 1692 ILE ILE A . n A 1 186 ASN 186 1693 1693 ASN ASN A . n A 1 187 ILE 187 1694 1694 ILE ILE A . n A 1 188 CYS 188 1695 1695 CYS CYS A . n A 1 189 GLN 189 1696 1696 GLN GLN A . n A 1 190 PRO 190 1697 1697 PRO PRO A . n A 1 191 LEU 191 1698 1698 LEU LEU A . n A 1 192 ASN 192 1699 1699 ASN ASN A . n A 1 193 PRO 193 1700 1700 PRO PRO A . n A 1 194 MSE 194 1701 1701 MSE MSE A . n A 1 195 HIS 195 1702 1702 HIS HIS A . n A 1 196 ALA 196 1703 1703 ALA ALA A . n A 1 197 VAL 197 1704 1704 VAL VAL A . n A 1 198 PRO 198 1705 1705 PRO PRO A . n A 1 199 CYS 199 1706 1706 CYS CYS A . n A 1 200 PRO 200 1707 1707 PRO PRO A . n A 1 201 ALA 201 1708 1708 ALA ALA A . n A 1 202 GLY 202 1709 1709 GLY GLY A . n A 1 203 ALA 203 1710 1710 ALA ALA A . n A 1 204 ALA 204 1711 1711 ALA ALA A . n A 1 205 VAL 205 1712 1712 VAL VAL A . n A 1 206 CYS 206 1713 1713 CYS CYS A . n A 1 207 LYS 207 1714 1714 LYS LYS A . n A 1 208 VAL 208 1715 1715 VAL VAL A . n A 1 209 PRO 209 1716 1716 PRO PRO A . n A 1 210 ILE 210 1717 1717 ILE ILE A . n A 1 211 ASP 211 1718 1718 ASP ASP A . n A 1 212 GLY 212 1719 1719 GLY GLY A . n A 1 213 PRO 213 1720 1720 PRO PRO A . n A 1 214 PRO 214 1721 1721 PRO PRO A . n A 1 215 ILE 215 1722 1722 ILE ILE A . n A 1 216 ASP 216 1723 1723 ASP ASP A . n A 1 217 ILE 217 1724 1724 ILE ILE A . n A 1 218 GLY 218 1725 1725 GLY GLY A . n A 1 219 ARG 219 1726 1726 ARG ARG A . n A 1 220 VAL 220 1727 1727 VAL VAL A . n A 1 221 ALA 221 1728 1728 ALA ALA A . n A 1 222 GLY 222 1729 1729 GLY GLY A . n A 1 223 PRO 223 1730 1730 PRO PRO A . n A 1 224 PRO 224 1731 1731 PRO PRO A . n A 1 225 ILE 225 1732 1732 ILE ILE A . n A 1 226 LEU 226 1733 1733 LEU LEU A . n A 1 227 ASN 227 1734 1734 ASN ASN A . n A 1 228 PRO 228 1735 1735 PRO PRO A . n A 1 229 ILE 229 1736 1736 ILE ILE A . n A 1 230 ALA 230 1737 1737 ALA ALA A . n A 1 231 ASN 231 1738 1738 ASN ASN A . n A 1 232 GLU 232 1739 1739 GLU GLU A . n A 1 233 ILE 233 1740 1740 ILE ILE A . n A 1 234 TYR 234 1741 1741 TYR TYR A . n A 1 235 LEU 235 1742 1742 LEU LEU A . n A 1 236 ASN 236 1743 1743 ASN ASN A . n A 1 237 PHE 237 1744 1744 PHE PHE A . n A 1 238 GLU 238 1745 1745 GLU GLU A . n A 1 239 SER 239 1746 1746 SER SER A . n A 1 240 SER 240 1747 1747 SER SER A . n A 1 241 THR 241 1748 1748 THR THR A . n A 1 242 PRO 242 1749 1749 PRO PRO A . n A 1 243 CYS 243 1750 1750 CYS CYS A . n A 1 244 LEU 244 1751 1751 LEU LEU A . n A 1 245 ALA 245 1752 1752 ALA ALA A . n A 1 246 ASP 246 1753 1753 ASP ASP A . n A 1 247 LYS 247 1754 1754 LYS LYS A . n A 1 248 HIS 248 1755 1755 HIS HIS A . n A 1 249 PHE 249 1756 1756 PHE PHE A . n A 1 250 ASN 250 1757 1757 ASN ASN A . n A 1 251 TYR 251 1758 1758 TYR TYR A . n A 1 252 THR 252 1759 1759 THR THR A . n A 1 253 SER 253 1760 1760 SER SER A . n A 1 254 LEU 254 1761 1761 LEU LEU A . n A 1 255 ILE 255 1762 1762 ILE ILE A . n A 1 256 ALA 256 1763 1763 ALA ALA A . n A 1 257 PHE 257 1764 1764 PHE PHE A . n A 1 258 HIS 258 1765 1765 HIS HIS A . n A 1 259 CYS 259 1766 1766 CYS CYS A . n A 1 260 LYS 260 1767 1767 LYS LYS A . n A 1 261 ARG 261 1768 1768 ARG ARG A . n A 1 262 GLY 262 1769 1769 GLY GLY A . n A 1 263 VAL 263 1770 1770 VAL VAL A . n A 1 264 SER 264 1771 1771 SER SER A . n A 1 265 MSE 265 1772 1772 MSE MSE A . n A 1 266 GLY 266 1773 1773 GLY GLY A . n A 1 267 THR 267 1774 1774 THR THR A . n A 1 268 PRO 268 1775 1775 PRO PRO A . n A 1 269 LYS 269 1776 1776 LYS LYS A . n A 1 270 LEU 270 1777 1777 LEU LEU A . n A 1 271 LEU 271 1778 1778 LEU LEU A . n A 1 272 ARG 272 1779 1779 ARG ARG A . n A 1 273 THR 273 1780 1780 THR THR A . n A 1 274 SER 274 1781 1781 SER SER A . n A 1 275 GLU 275 1782 1782 GLU GLU A . n A 1 276 CYS 276 1783 1783 CYS CYS A . n A 1 277 ASP 277 1784 1784 ASP ASP A . n A 1 278 PHE 278 1785 1785 PHE PHE A . n A 1 279 VAL 279 1786 1786 VAL VAL A . n A 1 280 PHE 280 1787 1787 PHE PHE A . n A 1 281 GLU 281 1788 1788 GLU GLU A . n A 1 282 TRP 282 1789 1789 TRP TRP A . n A 1 283 GLU 283 1790 1790 GLU GLU A . n A 1 284 THR 284 1791 1791 THR THR A . n A 1 285 PRO 285 1792 1792 PRO PRO A . n A 1 286 VAL 286 1793 1793 VAL VAL A . n A 1 287 VAL 287 1794 1794 VAL VAL A . n A 1 288 CYS 288 1795 1795 CYS CYS A . n A 1 289 PRO 289 1796 1796 PRO PRO A . n A 1 290 ASP 290 1797 1797 ASP ASP A . n A 1 291 GLU 291 1798 ? ? ? A . n A 1 292 VAL 292 1799 ? ? ? A . n A 1 293 LYS 293 1800 ? ? ? A . n A 1 294 HIS 294 1801 ? ? ? A . n A 1 295 HIS 295 1802 ? ? ? A . n A 1 296 HIS 296 1803 ? ? ? A . n A 1 297 HIS 297 1804 ? ? ? A . n A 1 298 HIS 298 1805 ? ? ? A . n A 1 299 HIS 299 1806 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 2797 2797 NAG NAG A . C 2 NAG 1 2798 2798 NAG NAG A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 149 A ASN 1656 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 250 A ASN 1757 ? ASN 'GLYCOSYLATION SITE' 3 A MSE 43 A MSE 1550 ? MET SELENOMETHIONINE 4 A MSE 118 A MSE 1625 ? MET SELENOMETHIONINE 5 A MSE 194 A MSE 1701 ? MET SELENOMETHIONINE 6 A MSE 265 A MSE 1772 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-02-28 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Source and taxonomy' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' software 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_database_status 7 4 'Structure model' pdbx_entity_nonpoly 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site 10 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_entity_src_gen.gene_src_common_name' 2 3 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' 3 3 'Structure model' '_entity_src_gen.pdbx_host_org_cell_line' 4 3 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 5 3 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 6 3 'Structure model' '_entity_src_gen.pdbx_host_org_variant' 7 3 'Structure model' '_software.name' 8 4 'Structure model' '_chem_comp.name' 9 4 'Structure model' '_chem_comp.type' 10 4 'Structure model' '_entity.pdbx_description' 11 4 'Structure model' '_pdbx_database_status.status_code_sf' 12 4 'Structure model' '_pdbx_entity_nonpoly.name' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 4 'Structure model' '_struct_conn.pdbx_role' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 18.8495 25.5542 28.6187 -0.0624 -0.3830 -0.2409 0.2303 0.1897 0.0207 6.9369 5.5426 5.6920 -0.4006 2.2846 0.1386 -0.2881 -0.2869 -0.0884 0.6603 0.3271 0.9651 -0.6230 -0.0754 -0.0390 'X-RAY DIFFRACTION' 2 ? refined 19.0797 35.0777 3.2419 -0.2917 -0.1814 -0.1807 0.1163 0.0179 -0.0541 3.2157 5.8955 7.5837 -0.3583 1.4055 -2.2797 -0.1292 0.1942 0.2713 -0.6676 0.4533 0.0853 0.1051 0.5940 -0.3241 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1515 ? ? A 1650 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 1651 ? ? A 1797 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 HKL2Map phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # _pdbx_entry_details.entry_id 2V5N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONFLICT INDICATED IN THE SEQADV RECORDS BELOW HAS BEEN DESCRIBED IN UNIPROT ENTRY P11717 UNDER REFERENCE WITH PUBMED ID: 2957598. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 1553 ? ? 61.55 112.62 2 1 LEU A 1581 ? ? -5.65 106.50 3 1 ASP A 1585 ? ? 61.59 64.90 4 1 ASP A 1594 ? ? 68.91 77.65 5 1 SER A 1600 ? ? -72.64 -95.66 6 1 SER A 1602 ? ? -44.39 -86.66 7 1 ALA A 1618 ? ? -52.70 -70.96 8 1 THR A 1621 ? ? -67.53 -73.28 9 1 GLU A 1647 ? ? -121.80 -72.43 10 1 THR A 1650 ? ? -57.29 105.95 11 1 PRO A 1665 ? ? -49.61 -19.92 12 1 GLU A 1674 ? ? -73.69 -141.90 13 1 ALA A 1675 ? ? -156.91 18.69 14 1 CYS A 1695 ? ? 69.98 -23.32 15 1 HIS A 1702 ? ? -27.82 112.64 16 1 ASP A 1718 ? ? 52.15 17.87 17 1 LEU A 1778 ? ? -84.36 -75.31 18 1 SER A 1781 ? ? -111.24 -168.04 19 1 VAL A 1793 ? ? -144.89 -17.62 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 1544 ? CG ? A GLU 37 CG 2 1 Y 1 A GLU 1544 ? CD ? A GLU 37 CD 3 1 Y 1 A GLU 1544 ? OE1 ? A GLU 37 OE1 4 1 Y 1 A GLU 1544 ? OE2 ? A GLU 37 OE2 5 1 Y 1 A TYR 1676 ? CG ? A TYR 169 CG 6 1 Y 1 A TYR 1676 ? CD1 ? A TYR 169 CD1 7 1 Y 1 A TYR 1676 ? CD2 ? A TYR 169 CD2 8 1 Y 1 A TYR 1676 ? CE1 ? A TYR 169 CE1 9 1 Y 1 A TYR 1676 ? CE2 ? A TYR 169 CE2 10 1 Y 1 A TYR 1676 ? CZ ? A TYR 169 CZ 11 1 Y 1 A TYR 1676 ? OH ? A TYR 169 OH 12 1 Y 1 A ARG 1768 ? CG ? A ARG 261 CG 13 1 Y 1 A ARG 1768 ? CD ? A ARG 261 CD 14 1 Y 1 A ARG 1768 ? NE ? A ARG 261 NE 15 1 Y 1 A ARG 1768 ? CZ ? A ARG 261 CZ 16 1 Y 1 A ARG 1768 ? NH1 ? A ARG 261 NH1 17 1 Y 1 A ARG 1768 ? NH2 ? A ARG 261 NH2 18 1 Y 1 A LYS 1776 ? CG ? A LYS 269 CG 19 1 Y 1 A LYS 1776 ? CD ? A LYS 269 CD 20 1 Y 1 A LYS 1776 ? CE ? A LYS 269 CE 21 1 Y 1 A LYS 1776 ? NZ ? A LYS 269 NZ 22 1 Y 1 A ARG 1779 ? CG ? A ARG 272 CG 23 1 Y 1 A ARG 1779 ? CD ? A ARG 272 CD 24 1 Y 1 A ARG 1779 ? NE ? A ARG 272 NE 25 1 Y 1 A ARG 1779 ? CZ ? A ARG 272 CZ 26 1 Y 1 A ARG 1779 ? NH1 ? A ARG 272 NH1 27 1 Y 1 A ARG 1779 ? NH2 ? A ARG 272 NH2 28 1 Y 1 A GLU 1782 ? CG ? A GLU 275 CG 29 1 Y 1 A GLU 1782 ? CD ? A GLU 275 CD 30 1 Y 1 A GLU 1782 ? OE1 ? A GLU 275 OE1 31 1 Y 1 A GLU 1782 ? OE2 ? A GLU 275 OE2 32 1 Y 1 A GLU 1788 ? CG ? A GLU 281 CG 33 1 Y 1 A GLU 1788 ? CD ? A GLU 281 CD 34 1 Y 1 A GLU 1788 ? OE1 ? A GLU 281 OE1 35 1 Y 1 A GLU 1788 ? OE2 ? A GLU 281 OE2 36 1 Y 1 A THR 1791 ? OG1 ? A THR 284 OG1 37 1 Y 1 A THR 1791 ? CG2 ? A THR 284 CG2 38 1 Y 1 A VAL 1793 ? CG1 ? A VAL 286 CG1 39 1 Y 1 A VAL 1793 ? CG2 ? A VAL 286 CG2 40 1 Y 1 A VAL 1794 ? CG1 ? A VAL 287 CG1 41 1 Y 1 A VAL 1794 ? CG2 ? A VAL 287 CG2 42 1 Y 1 A ASP 1797 ? CA ? A ASP 290 CA 43 1 Y 1 A ASP 1797 ? C ? A ASP 290 C 44 1 Y 1 A ASP 1797 ? O ? A ASP 290 O 45 1 Y 1 A ASP 1797 ? CB ? A ASP 290 CB 46 1 Y 1 A ASP 1797 ? CG ? A ASP 290 CG 47 1 Y 1 A ASP 1797 ? OD1 ? A ASP 290 OD1 48 1 Y 1 A ASP 1797 ? OD2 ? A ASP 290 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1508 ? A MSE 1 2 1 Y 1 A LYS 1509 ? A LYS 2 3 1 Y 1 A SER 1510 ? A SER 3 4 1 Y 1 A ASN 1511 ? A ASN 4 5 1 Y 1 A GLU 1512 ? A GLU 5 6 1 Y 1 A HIS 1513 ? A HIS 6 7 1 Y 1 A ASP 1514 ? A ASP 7 8 1 Y 1 A ASP 1515 ? A ASP 8 9 1 Y 1 A ASP 1677 ? A ASP 170 10 1 Y 1 A GLU 1678 ? A GLU 171 11 1 Y 1 A SER 1679 ? A SER 172 12 1 Y 1 A GLU 1680 ? A GLU 173 13 1 Y 1 A ASP 1681 ? A ASP 174 14 1 Y 1 A ASP 1682 ? A ASP 175 15 1 Y 1 A ALA 1683 ? A ALA 176 16 1 Y 1 A SER 1684 ? A SER 177 17 1 Y 1 A ASP 1685 ? A ASP 178 18 1 Y 1 A THR 1686 ? A THR 179 19 1 Y 1 A GLU 1798 ? A GLU 291 20 1 Y 1 A VAL 1799 ? A VAL 292 21 1 Y 1 A LYS 1800 ? A LYS 293 22 1 Y 1 A HIS 1801 ? A HIS 294 23 1 Y 1 A HIS 1802 ? A HIS 295 24 1 Y 1 A HIS 1803 ? A HIS 296 25 1 Y 1 A HIS 1804 ? A HIS 297 26 1 Y 1 A HIS 1805 ? A HIS 298 27 1 Y 1 A HIS 1806 ? A HIS 299 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG #