data_2V6Y # _entry.id 2V6Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V6Y PDBE EBI-33264 WWPDB D_1290033264 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V6Y _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-07-24 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Obita, T.' 1 'Saksena, S.' 2 'Ghazi-Tabatabai, S.' 3 'Gill, D.J.' 4 'Perisic, O.' 5 'Emr, S.D.' 6 'Williams, R.L.' 7 # _citation.id primary _citation.title 'Structural Basis for Selective Recognition of Escrt-III by the Aaa ATPase Vps4' _citation.journal_abbrev Nature _citation.journal_volume 449 _citation.page_first 735 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17928861 _citation.pdbx_database_id_DOI 10.1038/NATURE06171 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Obita, T.' 1 primary 'Saksena, S.' 2 primary 'Ghazi-Tabatabai, S.' 3 primary 'Gill, D.J.' 4 primary 'Perisic, O.' 5 primary 'Emr, S.D.' 6 primary 'Williams, R.L.' 7 # _cell.entry_id 2V6Y _cell.length_a 56.178 _cell.length_b 69.267 _cell.length_c 123.184 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V6Y _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'AAA FAMILY ATPASE, P60 KATANIN' 9363.847 1 3.6.4.6 ? 'MIT DOMAIN, RESIDUES 1-83' ? 2 polymer man 'AAA FAMILY ATPASE, P60 KATANIN' 9349.820 1 3.6.4.6 ? 'MIT DOMAIN, RESIDUES 1-83' ? 3 non-polymer syn 'S,R MESO-TARTARIC ACID' 150.087 2 ? ? ? ? 4 water nat water 18.015 8 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'VPS4-LIKE AAA-ATPASE' 2 'VPS4-LIKE AAA-ATPASE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVLPASSD GSG ; ;MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVLPASSD GSG ; A ? 2 'polypeptide(L)' no no ;MSAQVMLEDMARKYAILAVKADKEGKVDDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVLPASSD GSG ; ;MSAQVMLEDMARKYAILAVKADKEGKVDDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVLPASSD GSG ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 ALA n 1 4 GLN n 1 5 VAL n 1 6 MET n 1 7 LEU n 1 8 GLU n 1 9 ASP n 1 10 MET n 1 11 ALA n 1 12 ARG n 1 13 LYS n 1 14 TYR n 1 15 ALA n 1 16 ILE n 1 17 LEU n 1 18 ALA n 1 19 VAL n 1 20 LYS n 1 21 ALA n 1 22 ASP n 1 23 LYS n 1 24 GLU n 1 25 GLY n 1 26 LYS n 1 27 VAL n 1 28 GLU n 1 29 ASP n 1 30 ALA n 1 31 ILE n 1 32 THR n 1 33 TYR n 1 34 TYR n 1 35 LYS n 1 36 LYS n 1 37 ALA n 1 38 ILE n 1 39 GLU n 1 40 VAL n 1 41 LEU n 1 42 SER n 1 43 GLN n 1 44 ILE n 1 45 ILE n 1 46 VAL n 1 47 LEU n 1 48 TYR n 1 49 PRO n 1 50 GLU n 1 51 SER n 1 52 VAL n 1 53 ALA n 1 54 ARG n 1 55 THR n 1 56 ALA n 1 57 TYR n 1 58 GLU n 1 59 GLN n 1 60 MET n 1 61 ILE n 1 62 ASN n 1 63 GLU n 1 64 TYR n 1 65 LYS n 1 66 LYS n 1 67 ARG n 1 68 ILE n 1 69 SER n 1 70 TYR n 1 71 LEU n 1 72 GLU n 1 73 LYS n 1 74 VAL n 1 75 LEU n 1 76 PRO n 1 77 ALA n 1 78 SER n 1 79 SER n 1 80 ASP n 1 81 GLY n 1 82 SER n 1 83 GLY n 2 1 MET n 2 2 SER n 2 3 ALA n 2 4 GLN n 2 5 VAL n 2 6 MET n 2 7 LEU n 2 8 GLU n 2 9 ASP n 2 10 MET n 2 11 ALA n 2 12 ARG n 2 13 LYS n 2 14 TYR n 2 15 ALA n 2 16 ILE n 2 17 LEU n 2 18 ALA n 2 19 VAL n 2 20 LYS n 2 21 ALA n 2 22 ASP n 2 23 LYS n 2 24 GLU n 2 25 GLY n 2 26 LYS n 2 27 VAL n 2 28 ASP n 2 29 ASP n 2 30 ALA n 2 31 ILE n 2 32 THR n 2 33 TYR n 2 34 TYR n 2 35 LYS n 2 36 LYS n 2 37 ALA n 2 38 ILE n 2 39 GLU n 2 40 VAL n 2 41 LEU n 2 42 SER n 2 43 GLN n 2 44 ILE n 2 45 ILE n 2 46 VAL n 2 47 LEU n 2 48 TYR n 2 49 PRO n 2 50 GLU n 2 51 SER n 2 52 VAL n 2 53 ALA n 2 54 ARG n 2 55 THR n 2 56 ALA n 2 57 TYR n 2 58 GLU n 2 59 GLN n 2 60 MET n 2 61 ILE n 2 62 ASN n 2 63 GLU n 2 64 TYR n 2 65 LYS n 2 66 LYS n 2 67 ARG n 2 68 ILE n 2 69 SER n 2 70 TYR n 2 71 LEU n 2 72 GLU n 2 73 LYS n 2 74 VAL n 2 75 LEU n 2 76 PRO n 2 77 ALA n 2 78 SER n 2 79 SER n 2 80 ASP n 2 81 GLY n 2 82 SER n 2 83 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'SULFOLOBUS SOLFATARICUS' 2287 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? 'B834(DE3)' ? ? ? ? ? ? ? ? ? ? ? POPTH ? ? 2 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'SULFOLOBUS SOLFATARICUS' 2287 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? 'B834(DE3)' ? ? ? ? ? ? ? ? ? ? ? POPTH ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP Q97ZJ7_SULSO 1 ? ? Q97ZJ7 ? 2 UNP Q97ZJ7_SULSO 2 ? ? Q97ZJ7 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V6Y A 1 ? 83 ? Q97ZJ7 1 ? 83 ? 1 83 2 2 2V6Y B 1 ? 83 ? Q97ZJ7 1 ? 83 ? 1 83 # _struct_ref_seq_dif.align_id 2 _struct_ref_seq_dif.pdbx_pdb_id_code 2V6Y _struct_ref_seq_dif.mon_id ASP _struct_ref_seq_dif.pdbx_pdb_strand_id B _struct_ref_seq_dif.seq_num 28 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q97ZJ7 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 28 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 28 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SRT non-polymer . 'S,R MESO-TARTARIC ACID' ? 'C4 H6 O6' 150.087 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V6Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.1 _exptl_crystal.density_percent_sol 60.8 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'RESERVOIR: 0.6 M AMMONIUM TARTRATE AND 2% PEG4K PROTEIN SOLUTION: 9 MG/ML IN 20 MM TRIS PH 8, 100 MM NACL, 2MM DTT' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'TORROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91840 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength 0.91840 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V6Y _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 61.50 _reflns.d_resolution_high 2.40 _reflns.number_obs 27901 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.30 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.53 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.37 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 3.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V6Y _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 9131 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 61.66 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 98.3 _refine.ls_R_factor_obs 0.253 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.252 _refine.ls_R_factor_R_free 0.277 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 463 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.910 _refine.correlation_coeff_Fo_to_Fc_free 0.901 _refine.B_iso_mean 50.46 _refine.aniso_B[1][1] -0.76000 _refine.aniso_B[2][2] 2.19000 _refine.aniso_B[3][3] -1.43000 _refine.aniso_B[1][2] -0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOODWITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.330 _refine.pdbx_overall_ESU_R_Free 0.248 _refine.overall_SU_ML 0.198 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 18.134 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1185 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 1213 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 61.66 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1216 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 8 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.333 2.006 ? 1631 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.952 3.000 ? 16 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.866 5.000 ? 144 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.005 24.800 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.856 15.000 ? 245 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.959 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 190 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 862 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 527 'X-RAY DIFFRACTION' ? r_nbd_other 0.345 0.200 ? 7 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.301 0.200 ? 849 'X-RAY DIFFRACTION' ? r_nbtor_other 0.033 0.200 ? 4 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.182 0.200 ? 19 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.261 0.200 ? 41 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.001 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.259 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.689 1.500 ? 756 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.915 2.000 ? 1178 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.679 3.000 ? 532 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.686 4.500 ? 453 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 284 .07 .05 'tight positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 1 A 288 .54 5.00 'loose positional' 1 2 'X-RAY DIFFRACTION' ? ? ? 1 A 284 .09 .50 'tight thermal' 1 3 'X-RAY DIFFRACTION' ? ? ? 1 A 288 1.45 10.00 'loose thermal' 1 4 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.46 _refine_ls_shell.number_reflns_R_work 675 _refine_ls_shell.R_factor_R_work 0.3140 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.4400 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.003859 _struct_ncs_oper.matrix[1][2] 0.061003 _struct_ncs_oper.matrix[1][3] 0.998130 _struct_ncs_oper.matrix[2][1] 0.110319 _struct_ncs_oper.matrix[2][2] 0.992071 _struct_ncs_oper.matrix[2][3] -0.060206 _struct_ncs_oper.matrix[3][1] -0.993889 _struct_ncs_oper.matrix[3][2] 0.109880 _struct_ncs_oper.matrix[3][3] -0.010558 _struct_ncs_oper.vector[1] -33.19650 _struct_ncs_oper.vector[2] -16.39670 _struct_ncs_oper.vector[3] 28.98410 # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 1 A 1000 1 3 ? ? ? ? ? ? ? ? 1 ? 2 B 1 B 1000 1 3 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2V6Y _struct.title 'Structure of the MIT domain from a S. solfataricus Vps4-like ATPase' _struct.pdbx_descriptor 'AAA FAMILY ATPASE, P60 KATANIN (E.C.3.6.4.6)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V6Y _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'MIT, VPS4, ARCHAEA, AAA-ATPASE, ATP-BINDING, MICROTUBULE INTERACTING AND TRAFFICKING DOMAIN, NUCLEOTIDE-BINDING, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? GLU A 24 ? SER A 2 GLU A 24 1 ? 23 HELX_P HELX_P2 2 LYS A 26 ? TYR A 48 ? LYS A 26 TYR A 48 1 ? 23 HELX_P HELX_P3 3 ALA A 53 ? GLU A 72 ? ALA A 53 GLU A 72 1 ? 20 HELX_P HELX_P4 4 SER B 2 ? GLU B 24 ? SER B 2 GLU B 24 1 ? 23 HELX_P HELX_P5 5 ASP B 28 ? TYR B 48 ? ASP B 28 TYR B 48 1 ? 21 HELX_P HELX_P6 6 ALA B 53 ? GLU B 72 ? ALA B 53 GLU B 72 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MET _struct_mon_prot_cis.label_seq_id 1 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MET _struct_mon_prot_cis.auth_seq_id 1 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 2 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.69 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SRT A1076' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SRT B1076' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLN A 4 ? GLN A 4 . ? 1_555 ? 2 AC1 4 TYR A 48 ? TYR A 48 . ? 1_555 ? 3 AC1 4 SER A 51 ? SER A 51 . ? 1_555 ? 4 AC1 4 VAL A 52 ? VAL A 52 . ? 1_555 ? 5 AC2 5 ARG A 12 ? ARG A 12 . ? 1_555 ? 6 AC2 5 GLN B 4 ? GLN B 4 . ? 1_555 ? 7 AC2 5 TYR B 48 ? TYR B 48 . ? 1_555 ? 8 AC2 5 SER B 51 ? SER B 51 . ? 1_555 ? 9 AC2 5 VAL B 52 ? VAL B 52 . ? 1_555 ? # _database_PDB_matrix.entry_id 2V6Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V6Y _atom_sites.fract_transf_matrix[1][1] 0.017801 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014437 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008118 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 MET 6 6 6 MET MET A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 MET 10 10 10 MET MET A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 MET 60 60 60 MET MET A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 PRO 76 76 ? ? ? A . n A 1 77 ALA 77 77 ? ? ? A . n A 1 78 SER 78 78 ? ? ? A . n A 1 79 SER 79 79 ? ? ? A . n A 1 80 ASP 80 80 ? ? ? A . n A 1 81 GLY 81 81 ? ? ? A . n A 1 82 SER 82 82 ? ? ? A . n A 1 83 GLY 83 83 ? ? ? A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 SER 2 2 2 SER SER B . n B 2 3 ALA 3 3 3 ALA ALA B . n B 2 4 GLN 4 4 4 GLN GLN B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 MET 6 6 6 MET MET B . n B 2 7 LEU 7 7 7 LEU LEU B . n B 2 8 GLU 8 8 8 GLU GLU B . n B 2 9 ASP 9 9 9 ASP ASP B . n B 2 10 MET 10 10 10 MET MET B . n B 2 11 ALA 11 11 11 ALA ALA B . n B 2 12 ARG 12 12 12 ARG ARG B . n B 2 13 LYS 13 13 13 LYS LYS B . n B 2 14 TYR 14 14 14 TYR TYR B . n B 2 15 ALA 15 15 15 ALA ALA B . n B 2 16 ILE 16 16 16 ILE ILE B . n B 2 17 LEU 17 17 17 LEU LEU B . n B 2 18 ALA 18 18 18 ALA ALA B . n B 2 19 VAL 19 19 19 VAL VAL B . n B 2 20 LYS 20 20 20 LYS LYS B . n B 2 21 ALA 21 21 21 ALA ALA B . n B 2 22 ASP 22 22 22 ASP ASP B . n B 2 23 LYS 23 23 23 LYS LYS B . n B 2 24 GLU 24 24 24 GLU GLU B . n B 2 25 GLY 25 25 25 GLY GLY B . n B 2 26 LYS 26 26 ? ? ? B . n B 2 27 VAL 27 27 ? ? ? B . n B 2 28 ASP 28 28 28 ASP ASP B . n B 2 29 ASP 29 29 29 ASP ASP B . n B 2 30 ALA 30 30 30 ALA ALA B . n B 2 31 ILE 31 31 31 ILE ILE B . n B 2 32 THR 32 32 32 THR THR B . n B 2 33 TYR 33 33 33 TYR TYR B . n B 2 34 TYR 34 34 34 TYR TYR B . n B 2 35 LYS 35 35 35 LYS LYS B . n B 2 36 LYS 36 36 36 LYS LYS B . n B 2 37 ALA 37 37 37 ALA ALA B . n B 2 38 ILE 38 38 38 ILE ILE B . n B 2 39 GLU 39 39 39 GLU GLU B . n B 2 40 VAL 40 40 40 VAL VAL B . n B 2 41 LEU 41 41 41 LEU LEU B . n B 2 42 SER 42 42 42 SER SER B . n B 2 43 GLN 43 43 43 GLN GLN B . n B 2 44 ILE 44 44 44 ILE ILE B . n B 2 45 ILE 45 45 45 ILE ILE B . n B 2 46 VAL 46 46 46 VAL VAL B . n B 2 47 LEU 47 47 47 LEU LEU B . n B 2 48 TYR 48 48 48 TYR TYR B . n B 2 49 PRO 49 49 49 PRO PRO B . n B 2 50 GLU 50 50 50 GLU GLU B . n B 2 51 SER 51 51 51 SER SER B . n B 2 52 VAL 52 52 52 VAL VAL B . n B 2 53 ALA 53 53 53 ALA ALA B . n B 2 54 ARG 54 54 54 ARG ARG B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 ALA 56 56 56 ALA ALA B . n B 2 57 TYR 57 57 57 TYR TYR B . n B 2 58 GLU 58 58 58 GLU GLU B . n B 2 59 GLN 59 59 59 GLN GLN B . n B 2 60 MET 60 60 60 MET MET B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 ASN 62 62 62 ASN ASN B . n B 2 63 GLU 63 63 63 GLU GLU B . n B 2 64 TYR 64 64 64 TYR TYR B . n B 2 65 LYS 65 65 65 LYS LYS B . n B 2 66 LYS 66 66 66 LYS LYS B . n B 2 67 ARG 67 67 67 ARG ARG B . n B 2 68 ILE 68 68 68 ILE ILE B . n B 2 69 SER 69 69 69 SER SER B . n B 2 70 TYR 70 70 70 TYR TYR B . n B 2 71 LEU 71 71 71 LEU LEU B . n B 2 72 GLU 72 72 72 GLU GLU B . n B 2 73 LYS 73 73 73 LYS LYS B . n B 2 74 VAL 74 74 74 VAL VAL B . n B 2 75 LEU 75 75 75 LEU LEU B . n B 2 76 PRO 76 76 ? ? ? B . n B 2 77 ALA 77 77 ? ? ? B . n B 2 78 SER 78 78 ? ? ? B . n B 2 79 SER 79 79 ? ? ? B . n B 2 80 ASP 80 80 ? ? ? B . n B 2 81 GLY 81 81 ? ? ? B . n B 2 82 SER 82 82 ? ? ? B . n B 2 83 GLY 83 83 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SRT 1 1076 1076 SRT SRT A . D 3 SRT 1 1076 1076 SRT SRT B . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . F 4 HOH 1 2001 2001 HOH HOH B . F 4 HOH 2 2002 2002 HOH HOH B . F 4 HOH 3 2003 2003 HOH HOH B . F 4 HOH 4 2004 2004 HOH HOH B . F 4 HOH 5 2005 2005 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS monomeric 1 2 author_and_software_defined_assembly PQS monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-16 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -15.4157 -1.5833 16.2190 -.1187 -.1287 -.2397 -.2112 .0087 .1170 3.4973 4.1285 8.6311 -1.9063 -.8871 1.5827 -.2261 -.0621 .0406 -.3579 .2814 -.0688 .6112 -.3766 -.0554 'X-RAY DIFFRACTION' 2 ? refined 14.2829 14.5652 16.7074 -.2547 -.1407 -.0823 -.0485 .1652 -.0418 10.2286 6.8763 10.4378 -3.0857 1.1574 -2.6349 -.3664 -.0837 -.4569 -.5267 .0619 -.4472 .6266 .8959 .3045 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 75 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 1076 ? ? A 1076 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 B 2 ? ? B 75 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 B 1076 ? ? B 1076 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 SnB phasing . ? 3 autoSHARP phasing . ? 4 REFMAC refinement 5.2.0019 ? 5 # _pdbx_entry_details.entry_id 2V6Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'SSO0909 MIT DOMAIN' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 74 ? ? -152.39 62.63 2 1 VAL B 74 ? ? 153.70 27.55 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 73 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 VAL _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 74 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -74.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 75 ? CG ? A LEU 75 CG 2 1 Y 1 A LEU 75 ? CD1 ? A LEU 75 CD1 3 1 Y 1 A LEU 75 ? CD2 ? A LEU 75 CD2 4 1 Y 1 B LEU 75 ? CG ? B LEU 75 CG 5 1 Y 1 B LEU 75 ? CD1 ? B LEU 75 CD1 6 1 Y 1 B LEU 75 ? CD2 ? B LEU 75 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 76 ? A PRO 76 2 1 Y 1 A ALA 77 ? A ALA 77 3 1 Y 1 A SER 78 ? A SER 78 4 1 Y 1 A SER 79 ? A SER 79 5 1 Y 1 A ASP 80 ? A ASP 80 6 1 Y 1 A GLY 81 ? A GLY 81 7 1 Y 1 A SER 82 ? A SER 82 8 1 Y 1 A GLY 83 ? A GLY 83 9 1 Y 1 B MET 1 ? B MET 1 10 1 Y 1 B LYS 26 ? B LYS 26 11 1 Y 1 B VAL 27 ? B VAL 27 12 1 Y 1 B PRO 76 ? B PRO 76 13 1 Y 1 B ALA 77 ? B ALA 77 14 1 Y 1 B SER 78 ? B SER 78 15 1 Y 1 B SER 79 ? B SER 79 16 1 Y 1 B ASP 80 ? B ASP 80 17 1 Y 1 B GLY 81 ? B GLY 81 18 1 Y 1 B SER 82 ? B SER 82 19 1 Y 1 B GLY 83 ? B GLY 83 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'S,R MESO-TARTARIC ACID' SRT 4 water HOH #