data_2V8E # _entry.id 2V8E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2V8E pdb_00002v8e 10.2210/pdb2v8e/pdb PDBE EBI-33380 ? ? WWPDB D_1290033380 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1FHC unspecified 'C3D AND HEPARIN BINDING COMPLEMENT FACTOR H DOMAINS SCR19-20' PDB 1HFH unspecified 'FACTOR H, 15TH AND 16TH C-MODULE PAIR ( NMR, MINIMIZED AVERAGED STRUCTURE)' PDB 2BZM unspecified 'SOLUTION STRUCTURE OF THE PRIMARY HOST RECOGNITION REGION OF COMPLEMENT FACTOR H' PDB 2G7I unspecified 'STRUCTURE OF HUMAN COMPLEMENT FACTOR H CARBOXYL TERMINALDOMAINS 19-20: A BASIS FOR ATYPICAL HEMOLYTIC UREMICSYNDROME' PDB 2JGX unspecified 'STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD NOT AT RISK VARIENT ( 402Y)' PDB 1HAQ unspecified 'FOUR MODELS OF HUMAN FACTOR H DETERMINED BY SOLUTION SCATTERING CURVE-FITTING AND HOMOLOGY MODELLING' PDB 1HCC unspecified . PDB 1HFI unspecified 'FACTOR H, 15TH C-MODULE PAIR (NMR, MINIMIZED AVERAGED STRUCTURE)' PDB 1KOV unspecified 'HOMOLOGY MODEL OF HUMAN FACTOR H SCRS 6 AND 7' PDB 2JGW unspecified 'STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD AT RISK VARIENT (402H)' PDB 2UWN unspecified 'CRYSTAL STRUCTURE OF HUMAN COMPLEMENT FACTOR H, SCR DOMAINS 6-8 (H402 RISK VARIANT), IN COMPLEX WITH LIGAND.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V8E _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-08-07 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prosser, B.E.' 1 'Johnson, S.' 2 'Roversi, P.' 3 'Herbert, A.P.' 4 'Blaum, B.S.' 5 'Tyrrell, J.' 6 'Jowitt, T.A.' 7 'Clark, S.J.' 8 'Tarelli, E.' 9 'Uhrin, D.' 10 'Barlow, P.N.' 11 'Sim, R.B.' 12 'Day, A.J.' 13 'Lea, S.M.' 14 # _citation.id primary _citation.title 'Structural Basis for Complement Factor H Linked Age-Related Macular Degeneration.' _citation.journal_abbrev J.Exp.Med. _citation.journal_volume 204 _citation.page_first 2277 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM JEMEAV _citation.country US _citation.journal_id_ISSN 0022-1007 _citation.journal_id_CSD 0774 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17893204 _citation.pdbx_database_id_DOI 10.1084/JEM.20071069 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Prosser, B.E.' 1 ? primary 'Johnson, S.' 2 ? primary 'Roversi, P.' 3 ? primary 'Herbert, A.P.' 4 ? primary 'Blaum, B.S.' 5 ? primary 'Tyrrell, J.' 6 ? primary 'Jowitt, T.A.' 7 ? primary 'Clark, S.J.' 8 ? primary 'Tarelli, E.' 9 ? primary 'Uhrin, D.' 10 ? primary 'Barlow, P.N.' 11 ? primary 'Sim, R.B.' 12 ? primary 'Day, A.J.' 13 ? primary 'Lea, S.M.' 14 ? # _cell.entry_id 2V8E _cell.length_a 75.000 _cell.length_b 92.500 _cell.length_c 57.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V8E _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'COMPLEMENT FACTOR H' 21287.537 1 ? ? 'DOMAINS 6,7 AND 8, RESIDUES 322-506' ? 2 branched man '1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose' 982.803 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 water nat water 18.015 46 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'H FACTOR 1, HUMAN COMPLEMENT FACTOR H' 2 'sucrose octasulfate' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GLKPCDYPDIKHGGLYHEN(MSE)RRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYF PYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTC(MSE)ENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTY ALKEKAKYQCKLGYVTADGETSGSITCGKDGWSAQPTCI ; _entity_poly.pdbx_seq_one_letter_code_can ;MGLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYN QNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKL GYVTADGETSGSITCGKDGWSAQPTCI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 LEU n 1 4 LYS n 1 5 PRO n 1 6 CYS n 1 7 ASP n 1 8 TYR n 1 9 PRO n 1 10 ASP n 1 11 ILE n 1 12 LYS n 1 13 HIS n 1 14 GLY n 1 15 GLY n 1 16 LEU n 1 17 TYR n 1 18 HIS n 1 19 GLU n 1 20 ASN n 1 21 MSE n 1 22 ARG n 1 23 ARG n 1 24 PRO n 1 25 TYR n 1 26 PHE n 1 27 PRO n 1 28 VAL n 1 29 ALA n 1 30 VAL n 1 31 GLY n 1 32 LYS n 1 33 TYR n 1 34 TYR n 1 35 SER n 1 36 TYR n 1 37 TYR n 1 38 CYS n 1 39 ASP n 1 40 GLU n 1 41 HIS n 1 42 PHE n 1 43 GLU n 1 44 THR n 1 45 PRO n 1 46 SER n 1 47 GLY n 1 48 SER n 1 49 TYR n 1 50 TRP n 1 51 ASP n 1 52 HIS n 1 53 ILE n 1 54 HIS n 1 55 CYS n 1 56 THR n 1 57 GLN n 1 58 ASP n 1 59 GLY n 1 60 TRP n 1 61 SER n 1 62 PRO n 1 63 ALA n 1 64 VAL n 1 65 PRO n 1 66 CYS n 1 67 LEU n 1 68 ARG n 1 69 LYS n 1 70 CYS n 1 71 TYR n 1 72 PHE n 1 73 PRO n 1 74 TYR n 1 75 LEU n 1 76 GLU n 1 77 ASN n 1 78 GLY n 1 79 TYR n 1 80 ASN n 1 81 GLN n 1 82 ASN n 1 83 HIS n 1 84 GLY n 1 85 ARG n 1 86 LYS n 1 87 PHE n 1 88 VAL n 1 89 GLN n 1 90 GLY n 1 91 LYS n 1 92 SER n 1 93 ILE n 1 94 ASP n 1 95 VAL n 1 96 ALA n 1 97 CYS n 1 98 HIS n 1 99 PRO n 1 100 GLY n 1 101 TYR n 1 102 ALA n 1 103 LEU n 1 104 PRO n 1 105 LYS n 1 106 ALA n 1 107 GLN n 1 108 THR n 1 109 THR n 1 110 VAL n 1 111 THR n 1 112 CYS n 1 113 MSE n 1 114 GLU n 1 115 ASN n 1 116 GLY n 1 117 TRP n 1 118 SER n 1 119 PRO n 1 120 THR n 1 121 PRO n 1 122 ARG n 1 123 CYS n 1 124 ILE n 1 125 ARG n 1 126 VAL n 1 127 LYS n 1 128 THR n 1 129 CYS n 1 130 SER n 1 131 LYS n 1 132 SER n 1 133 SER n 1 134 ILE n 1 135 ASP n 1 136 ILE n 1 137 GLU n 1 138 ASN n 1 139 GLY n 1 140 PHE n 1 141 ILE n 1 142 SER n 1 143 GLU n 1 144 SER n 1 145 GLN n 1 146 TYR n 1 147 THR n 1 148 TYR n 1 149 ALA n 1 150 LEU n 1 151 LYS n 1 152 GLU n 1 153 LYS n 1 154 ALA n 1 155 LYS n 1 156 TYR n 1 157 GLN n 1 158 CYS n 1 159 LYS n 1 160 LEU n 1 161 GLY n 1 162 TYR n 1 163 VAL n 1 164 THR n 1 165 ALA n 1 166 ASP n 1 167 GLY n 1 168 GLU n 1 169 THR n 1 170 SER n 1 171 GLY n 1 172 SER n 1 173 ILE n 1 174 THR n 1 175 CYS n 1 176 GLY n 1 177 LYS n 1 178 ASP n 1 179 GLY n 1 180 TRP n 1 181 SER n 1 182 ALA n 1 183 GLN n 1 184 PRO n 1 185 THR n 1 186 CYS n 1 187 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-14B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V8E 1 ? ? 2V8E ? 2 UNP CFAH_HUMAN 1 ? ? P08603 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V8E A 1 ? 2 ? 2V8E 320 ? 321 ? 320 321 2 2 2V8E A 3 ? 187 ? P08603 322 ? 506 ? 322 506 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 GU4 'D-saccharide, alpha linking' n 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose '2,3,4,6-tetra-O-sulfonato-alpha-D-glucose; 2,3,4,6-tetra-O-sulfonato-D-glucose; 2,3,4,6-tetra-O-sulfonato-glucose' 'C6 H12 O18 S4' 500.409 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YYJ 'D-saccharide, beta linking' n 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose ? 'C6 H12 O18 S4' 500.409 # _exptl.entry_id 2V8E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 43 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M SODIUM ACETATE, PH4.5, 20% (W/V) PEG3000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2006-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V8E _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.90 _reflns.d_resolution_high 2.50 _reflns.number_obs 7083 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.50 _reflns.B_iso_Wilson_estimate 6.136 _reflns.pdbx_redundancy 3.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.00 _reflns_shell.pdbx_redundancy 3.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V8E _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7044 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.0 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2233 _refine.ls_R_factor_all 0.2255 _refine.ls_R_factor_R_work 0.2233 _refine.ls_R_factor_R_free 0.2455 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 691 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET SCALING' _refine.solvent_model_param_ksol 0.43 _refine.solvent_model_param_bsol 150 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BUSTER-TNT-GELLY 2.1.1 E. BLANC, P. ROVERSI, C. VONRHEIN, C. FLENSBURG, S. M. LEA AND G.BRICOGNE' _refine.pdbx_starting_model 'PDB ENTRY 2JGW' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'TNT BCORREL' _refine.pdbx_stereochemistry_target_values 'TNT PROTGEO' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 0.2255 _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1479 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 78 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 1603 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 15.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.015 ? 1.0 1608 'X-RAY DIFFRACTION' ? t_angle_deg 1.355 ? 2.0 2190 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 18.677 ? 0 285 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? 0 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.003 ? 2.0 32 'X-RAY DIFFRACTION' ? t_gen_planes 0.015 ? 5.0 247 'X-RAY DIFFRACTION' ? t_it 1.972 ? 20 1608 'X-RAY DIFFRACTION' ? t_nbd 0.168 ? 5.0 38 'X-RAY DIFFRACTION' ? t_omega_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 2V8E _pdbx_refine.R_factor_all_no_cutoff 0.2255 _pdbx_refine.R_factor_obs_no_cutoff 0.0000 _pdbx_refine.free_R_factor_no_cutoff 0.2255 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 9.8 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 691 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 2V8E _struct.title 'Crystal structure of Human Complement Factor H, SCR domains 6-8 (H402 risk variant), in complex with ligand.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V8E _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text ;ALTERNATIVE SPLICING, SUCROSE OCTASULPHATE, AGE-RELATED MACULAR DEGENERATION, SUSHI, SECRETED, FACTOR H, COMPLEMENT, POLYMORPHISM, COMPLEMENT ALTERNATE PATHWAY, IMMUNE SYSTEM, DISEASE MUTATION, GLYCOSAMINOGLYCAN, GLYCOPROTEIN, INNATE IMMUNITY, IMMUNE RESPONSE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id HIS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 18 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ARG _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 23 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id HIS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 337 _struct_conf.end_auth_comp_id ARG _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 342 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 55 SG ? ? A CYS 325 A CYS 374 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 38 SG ? ? ? 1_555 A CYS 66 SG ? ? A CYS 357 A CYS 385 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? A CYS 70 SG ? ? ? 1_555 A CYS 112 SG ? ? A CYS 389 A CYS 431 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? A CYS 97 SG ? ? ? 1_555 A CYS 123 SG ? ? A CYS 416 A CYS 442 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? A CYS 129 SG ? ? ? 1_555 A CYS 175 SG ? ? A CYS 448 A CYS 494 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? A CYS 158 SG ? ? ? 1_555 A CYS 186 SG ? ? A CYS 477 A CYS 505 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale both ? A MSE 1 C ? ? ? 1_555 A GLY 2 N ? ? A MSE 320 A GLY 321 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A ASN 20 C ? ? ? 1_555 A MSE 21 N ? ? A ASN 339 A MSE 340 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale both ? A MSE 21 C ? ? ? 1_555 A ARG 22 N ? ? A MSE 340 A ARG 341 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A CYS 112 C ? ? ? 1_555 A MSE 113 N ? ? A CYS 431 A MSE 432 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A MSE 113 C ? ? ? 1_555 A GLU 114 N ? ? A MSE 432 A GLU 433 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? B GU4 . C1 ? ? ? 1_555 B YYJ . O2 ? ? B GU4 1 B YYJ 2 1_555 ? ? ? ? ? ? ? 1.433 sing ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 23 A . ? ARG 342 A PRO 24 A ? PRO 343 A 1 -16.10 2 PHE 26 A . ? PHE 345 A PRO 27 A ? PRO 346 A 1 0.37 3 SER 61 A . ? SER 380 A PRO 62 A ? PRO 381 A 1 2.44 4 PRO 104 A . ? PRO 423 A LYS 105 A ? LYS 424 A 1 0.99 5 LYS 105 A . ? LYS 424 A ALA 106 A ? ALA 425 A 1 0.92 6 SER 118 A . ? SER 437 A PRO 119 A ? PRO 438 A 1 -2.72 7 GLU 143 A . ? GLU 462 A SER 144 A ? SER 463 A 1 -3.31 8 ASP 166 A . ? ASP 485 A GLY 167 A ? GLY 486 A 1 -1.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 3 ? AC ? 3 ? AD ? 2 ? AE ? 2 ? AF ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AD 1 2 ? anti-parallel AE 1 2 ? anti-parallel AF 1 2 ? anti-parallel AF 2 3 ? anti-parallel AF 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 14 ? LEU A 16 ? GLY A 333 LEU A 335 AA 2 TYR A 33 ? CYS A 38 ? TYR A 352 CYS A 357 AA 3 TRP A 50 ? THR A 56 ? TRP A 369 THR A 375 AA 4 GLY A 59 ? SER A 61 ? GLY A 378 SER A 380 AB 1 PHE A 42 ? GLU A 43 ? PHE A 361 GLU A 362 AB 2 LEU A 67 ? TYR A 71 ? LEU A 386 TYR A 390 AB 3 LYS A 86 ? VAL A 88 ? LYS A 405 VAL A 407 AC 1 SER A 92 ? ASP A 94 ? SER A 411 ASP A 413 AC 2 THR A 109 ? MSE A 113 ? THR A 428 MSE A 432 AC 3 GLY A 116 ? SER A 118 ? GLY A 435 SER A 437 AD 1 TYR A 101 ? ALA A 102 ? TYR A 420 ALA A 421 AD 2 ILE A 124 ? ARG A 125 ? ILE A 443 ARG A 444 AE 1 THR A 128 ? SER A 130 ? THR A 447 SER A 449 AE 2 THR A 147 ? ALA A 149 ? THR A 466 ALA A 468 AF 1 GLY A 139 ? PHE A 140 ? GLY A 458 PHE A 459 AF 2 LYS A 153 ? CYS A 158 ? LYS A 472 CYS A 477 AF 3 SER A 170 ? GLY A 176 ? SER A 489 GLY A 495 AF 4 GLY A 179 ? TRP A 180 ? GLY A 498 TRP A 499 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLY A 15 ? N GLY A 334 O TYR A 37 ? O TYR A 356 AA 2 3 N TYR A 36 ? N TYR A 355 O ASP A 51 ? O ASP A 370 AA 3 4 N THR A 56 ? N THR A 375 O GLY A 59 ? O GLY A 378 AB 1 2 N GLU A 43 ? N GLU A 362 O LEU A 67 ? O LEU A 386 AB 2 3 N CYS A 70 ? N CYS A 389 O PHE A 87 ? O PHE A 406 AC 1 2 N ILE A 93 ? N ILE A 412 O VAL A 110 ? O VAL A 429 AC 2 3 N MSE A 113 ? N MSE A 432 O GLY A 116 ? O GLY A 435 AD 1 2 N ALA A 102 ? N ALA A 421 O ILE A 124 ? O ILE A 443 AE 1 2 N CYS A 129 ? N CYS A 448 O TYR A 148 ? O TYR A 467 AF 1 2 N PHE A 140 ? N PHE A 459 O GLN A 157 ? O GLN A 476 AF 2 3 N TYR A 156 ? N TYR A 475 O GLY A 171 ? O GLY A 490 AF 3 4 N GLY A 176 ? N GLY A 495 O GLY A 179 ? O GLY A 498 # _database_PDB_matrix.entry_id 2V8E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V8E _atom_sites.fract_transf_matrix[1][1] 0.013333 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010811 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017513 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 320 320 MSE MSE A . n A 1 2 GLY 2 321 321 GLY GLY A . n A 1 3 LEU 3 322 322 LEU LEU A . n A 1 4 LYS 4 323 323 LYS LYS A . n A 1 5 PRO 5 324 324 PRO PRO A . n A 1 6 CYS 6 325 325 CYS CYS A . n A 1 7 ASP 7 326 326 ASP ASP A . n A 1 8 TYR 8 327 327 TYR TYR A . n A 1 9 PRO 9 328 328 PRO PRO A . n A 1 10 ASP 10 329 329 ASP ASP A . n A 1 11 ILE 11 330 330 ILE ILE A . n A 1 12 LYS 12 331 331 LYS LYS A . n A 1 13 HIS 13 332 332 HIS HIS A . n A 1 14 GLY 14 333 333 GLY GLY A . n A 1 15 GLY 15 334 334 GLY GLY A . n A 1 16 LEU 16 335 335 LEU LEU A . n A 1 17 TYR 17 336 336 TYR TYR A . n A 1 18 HIS 18 337 337 HIS HIS A . n A 1 19 GLU 19 338 338 GLU GLU A . n A 1 20 ASN 20 339 339 ASN ASN A . n A 1 21 MSE 21 340 340 MSE MSE A . n A 1 22 ARG 22 341 341 ARG ARG A . n A 1 23 ARG 23 342 342 ARG ARG A . n A 1 24 PRO 24 343 343 PRO PRO A . n A 1 25 TYR 25 344 344 TYR TYR A . n A 1 26 PHE 26 345 345 PHE PHE A . n A 1 27 PRO 27 346 346 PRO PRO A . n A 1 28 VAL 28 347 347 VAL VAL A . n A 1 29 ALA 29 348 348 ALA ALA A . n A 1 30 VAL 30 349 349 VAL VAL A . n A 1 31 GLY 31 350 350 GLY GLY A . n A 1 32 LYS 32 351 351 LYS LYS A . n A 1 33 TYR 33 352 352 TYR TYR A . n A 1 34 TYR 34 353 353 TYR TYR A . n A 1 35 SER 35 354 354 SER SER A . n A 1 36 TYR 36 355 355 TYR TYR A . n A 1 37 TYR 37 356 356 TYR TYR A . n A 1 38 CYS 38 357 357 CYS CYS A . n A 1 39 ASP 39 358 358 ASP ASP A . n A 1 40 GLU 40 359 359 GLU GLU A . n A 1 41 HIS 41 360 360 HIS HIS A . n A 1 42 PHE 42 361 361 PHE PHE A . n A 1 43 GLU 43 362 362 GLU GLU A . n A 1 44 THR 44 363 363 THR THR A . n A 1 45 PRO 45 364 364 PRO PRO A . n A 1 46 SER 46 365 365 SER SER A . n A 1 47 GLY 47 366 366 GLY GLY A . n A 1 48 SER 48 367 367 SER SER A . n A 1 49 TYR 49 368 368 TYR TYR A . n A 1 50 TRP 50 369 369 TRP TRP A . n A 1 51 ASP 51 370 370 ASP ASP A . n A 1 52 HIS 52 371 371 HIS HIS A . n A 1 53 ILE 53 372 372 ILE ILE A . n A 1 54 HIS 54 373 373 HIS HIS A . n A 1 55 CYS 55 374 374 CYS CYS A . n A 1 56 THR 56 375 375 THR THR A . n A 1 57 GLN 57 376 376 GLN GLN A . n A 1 58 ASP 58 377 377 ASP ASP A . n A 1 59 GLY 59 378 378 GLY GLY A . n A 1 60 TRP 60 379 379 TRP TRP A . n A 1 61 SER 61 380 380 SER SER A . n A 1 62 PRO 62 381 381 PRO PRO A . n A 1 63 ALA 63 382 382 ALA ALA A . n A 1 64 VAL 64 383 383 VAL VAL A . n A 1 65 PRO 65 384 384 PRO PRO A . n A 1 66 CYS 66 385 385 CYS CYS A . n A 1 67 LEU 67 386 386 LEU LEU A . n A 1 68 ARG 68 387 387 ARG ARG A . n A 1 69 LYS 69 388 388 LYS LYS A . n A 1 70 CYS 70 389 389 CYS CYS A . n A 1 71 TYR 71 390 390 TYR TYR A . n A 1 72 PHE 72 391 391 PHE PHE A . n A 1 73 PRO 73 392 392 PRO PRO A . n A 1 74 TYR 74 393 393 TYR TYR A . n A 1 75 LEU 75 394 394 LEU LEU A . n A 1 76 GLU 76 395 395 GLU GLU A . n A 1 77 ASN 77 396 396 ASN ASN A . n A 1 78 GLY 78 397 397 GLY GLY A . n A 1 79 TYR 79 398 398 TYR TYR A . n A 1 80 ASN 80 399 399 ASN ASN A . n A 1 81 GLN 81 400 400 GLN GLN A . n A 1 82 ASN 82 401 401 ASN ASN A . n A 1 83 HIS 83 402 402 HIS HIS A . n A 1 84 GLY 84 403 403 GLY GLY A . n A 1 85 ARG 85 404 404 ARG ARG A . n A 1 86 LYS 86 405 405 LYS LYS A . n A 1 87 PHE 87 406 406 PHE PHE A . n A 1 88 VAL 88 407 407 VAL VAL A . n A 1 89 GLN 89 408 408 GLN GLN A . n A 1 90 GLY 90 409 409 GLY GLY A . n A 1 91 LYS 91 410 410 LYS LYS A . n A 1 92 SER 92 411 411 SER SER A . n A 1 93 ILE 93 412 412 ILE ILE A . n A 1 94 ASP 94 413 413 ASP ASP A . n A 1 95 VAL 95 414 414 VAL VAL A . n A 1 96 ALA 96 415 415 ALA ALA A . n A 1 97 CYS 97 416 416 CYS CYS A . n A 1 98 HIS 98 417 417 HIS HIS A . n A 1 99 PRO 99 418 418 PRO PRO A . n A 1 100 GLY 100 419 419 GLY GLY A . n A 1 101 TYR 101 420 420 TYR TYR A . n A 1 102 ALA 102 421 421 ALA ALA A . n A 1 103 LEU 103 422 422 LEU LEU A . n A 1 104 PRO 104 423 423 PRO PRO A . n A 1 105 LYS 105 424 424 LYS LYS A . n A 1 106 ALA 106 425 425 ALA ALA A . n A 1 107 GLN 107 426 426 GLN GLN A . n A 1 108 THR 108 427 427 THR THR A . n A 1 109 THR 109 428 428 THR THR A . n A 1 110 VAL 110 429 429 VAL VAL A . n A 1 111 THR 111 430 430 THR THR A . n A 1 112 CYS 112 431 431 CYS CYS A . n A 1 113 MSE 113 432 432 MSE MSE A . n A 1 114 GLU 114 433 433 GLU GLU A . n A 1 115 ASN 115 434 434 ASN ASN A . n A 1 116 GLY 116 435 435 GLY GLY A . n A 1 117 TRP 117 436 436 TRP TRP A . n A 1 118 SER 118 437 437 SER SER A . n A 1 119 PRO 119 438 438 PRO PRO A . n A 1 120 THR 120 439 439 THR THR A . n A 1 121 PRO 121 440 440 PRO PRO A . n A 1 122 ARG 122 441 441 ARG ARG A . n A 1 123 CYS 123 442 442 CYS CYS A . n A 1 124 ILE 124 443 443 ILE ILE A . n A 1 125 ARG 125 444 444 ARG ARG A . n A 1 126 VAL 126 445 445 VAL VAL A . n A 1 127 LYS 127 446 446 LYS LYS A . n A 1 128 THR 128 447 447 THR THR A . n A 1 129 CYS 129 448 448 CYS CYS A . n A 1 130 SER 130 449 449 SER SER A . n A 1 131 LYS 131 450 450 LYS LYS A . n A 1 132 SER 132 451 451 SER SER A . n A 1 133 SER 133 452 452 SER SER A . n A 1 134 ILE 134 453 453 ILE ILE A . n A 1 135 ASP 135 454 454 ASP ASP A . n A 1 136 ILE 136 455 455 ILE ILE A . n A 1 137 GLU 137 456 456 GLU GLU A . n A 1 138 ASN 138 457 457 ASN ASN A . n A 1 139 GLY 139 458 458 GLY GLY A . n A 1 140 PHE 140 459 459 PHE PHE A . n A 1 141 ILE 141 460 460 ILE ILE A . n A 1 142 SER 142 461 461 SER SER A . n A 1 143 GLU 143 462 462 GLU GLU A . n A 1 144 SER 144 463 463 SER SER A . n A 1 145 GLN 145 464 464 GLN GLN A . n A 1 146 TYR 146 465 465 TYR TYR A . n A 1 147 THR 147 466 466 THR THR A . n A 1 148 TYR 148 467 467 TYR TYR A . n A 1 149 ALA 149 468 468 ALA ALA A . n A 1 150 LEU 150 469 469 LEU LEU A . n A 1 151 LYS 151 470 470 LYS LYS A . n A 1 152 GLU 152 471 471 GLU GLU A . n A 1 153 LYS 153 472 472 LYS LYS A . n A 1 154 ALA 154 473 473 ALA ALA A . n A 1 155 LYS 155 474 474 LYS LYS A . n A 1 156 TYR 156 475 475 TYR TYR A . n A 1 157 GLN 157 476 476 GLN GLN A . n A 1 158 CYS 158 477 477 CYS CYS A . n A 1 159 LYS 159 478 478 LYS LYS A . n A 1 160 LEU 160 479 479 LEU LEU A . n A 1 161 GLY 161 480 480 GLY GLY A . n A 1 162 TYR 162 481 481 TYR TYR A . n A 1 163 VAL 163 482 482 VAL VAL A . n A 1 164 THR 164 483 483 THR THR A . n A 1 165 ALA 165 484 484 ALA ALA A . n A 1 166 ASP 166 485 485 ASP ASP A . n A 1 167 GLY 167 486 486 GLY GLY A . n A 1 168 GLU 168 487 487 GLU GLU A . n A 1 169 THR 169 488 488 THR THR A . n A 1 170 SER 170 489 489 SER SER A . n A 1 171 GLY 171 490 490 GLY GLY A . n A 1 172 SER 172 491 491 SER SER A . n A 1 173 ILE 173 492 492 ILE ILE A . n A 1 174 THR 174 493 493 THR THR A . n A 1 175 CYS 175 494 494 CYS CYS A . n A 1 176 GLY 176 495 495 GLY GLY A . n A 1 177 LYS 177 496 496 LYS LYS A . n A 1 178 ASP 178 497 497 ASP ASP A . n A 1 179 GLY 179 498 498 GLY GLY A . n A 1 180 TRP 180 499 499 TRP TRP A . n A 1 181 SER 181 500 500 SER SER A . n A 1 182 ALA 182 501 501 ALA ALA A . n A 1 183 GLN 183 502 502 GLN GLN A . n A 1 184 PRO 184 503 503 PRO PRO A . n A 1 185 THR 185 504 504 THR THR A . n A 1 186 CYS 186 505 505 CYS CYS A . n A 1 187 ILE 187 506 506 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 1508 1508 CL CL A . D 3 CL 1 1509 1509 CL CL A . E 4 SO4 1 1510 1510 SO4 SO4 A . F 4 SO4 1 1511 1511 SO4 SO4 A . G 4 SO4 1 1512 1512 SO4 SO4 A . H 5 GOL 1 1513 1513 GOL GOL A . I 6 HOH 1 2001 2001 HOH HOH A . I 6 HOH 2 2002 2002 HOH HOH A . I 6 HOH 3 2003 2003 HOH HOH A . I 6 HOH 4 2004 2004 HOH HOH A . I 6 HOH 5 2005 2005 HOH HOH A . I 6 HOH 6 2006 2006 HOH HOH A . I 6 HOH 7 2007 2007 HOH HOH A . I 6 HOH 8 2008 2008 HOH HOH A . I 6 HOH 9 2009 2009 HOH HOH A . I 6 HOH 10 2010 2010 HOH HOH A . I 6 HOH 11 2011 2011 HOH HOH A . I 6 HOH 12 2012 2012 HOH HOH A . I 6 HOH 13 2013 2013 HOH HOH A . I 6 HOH 14 2014 2014 HOH HOH A . I 6 HOH 15 2015 2015 HOH HOH A . I 6 HOH 16 2016 2016 HOH HOH A . I 6 HOH 17 2017 2017 HOH HOH A . I 6 HOH 18 2018 2018 HOH HOH A . I 6 HOH 19 2019 2019 HOH HOH A . I 6 HOH 20 2020 2020 HOH HOH A . I 6 HOH 21 2021 2021 HOH HOH A . I 6 HOH 22 2022 2022 HOH HOH A . I 6 HOH 23 2023 2023 HOH HOH A . I 6 HOH 24 2024 2024 HOH HOH A . I 6 HOH 25 2025 2025 HOH HOH A . I 6 HOH 26 2026 2026 HOH HOH A . I 6 HOH 27 2027 2027 HOH HOH A . I 6 HOH 28 2028 2028 HOH HOH A . I 6 HOH 29 2029 2029 HOH HOH A . I 6 HOH 30 2030 2030 HOH HOH A . I 6 HOH 31 2031 2031 HOH HOH A . I 6 HOH 32 2032 2032 HOH HOH A . I 6 HOH 33 2033 2033 HOH HOH A . I 6 HOH 34 2034 2034 HOH HOH A . I 6 HOH 35 2035 2035 HOH HOH A . I 6 HOH 36 2036 2036 HOH HOH A . I 6 HOH 37 2037 2037 HOH HOH A . I 6 HOH 38 2038 2038 HOH HOH A . I 6 HOH 39 2039 2039 HOH HOH A . I 6 HOH 40 2040 2040 HOH HOH A . I 6 HOH 41 2041 2041 HOH HOH A . I 6 HOH 42 2042 2042 HOH HOH A . I 6 HOH 43 2043 2043 HOH HOH A . I 6 HOH 44 2044 2044 HOH HOH A . I 6 HOH 45 2045 2045 HOH HOH A . I 6 HOH 46 2046 2046 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900013 _pdbx_molecule_features.name 'sucrose octasulfate' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class 'Substrate analog' _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900013 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 320 ? MET SELENOMETHIONINE 2 A MSE 21 A MSE 340 ? MET SELENOMETHIONINE 3 A MSE 113 A MSE 432 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2022 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-12-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' Other 8 4 'Structure model' 'Refinement description' 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Database references' 12 5 'Structure model' 'Refinement description' 13 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' entity_name_com 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_molecule_features 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' software 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen 19 5 'Structure model' chem_comp 20 5 'Structure model' chem_comp_atom 21 5 'Structure model' chem_comp_bond 22 5 'Structure model' database_2 23 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_atom_id' 10 4 'Structure model' '_atom_site.label_comp_id' 11 4 'Structure model' '_atom_site.type_symbol' 12 4 'Structure model' '_chem_comp.formula' 13 4 'Structure model' '_chem_comp.formula_weight' 14 4 'Structure model' '_chem_comp.id' 15 4 'Structure model' '_chem_comp.mon_nstd_flag' 16 4 'Structure model' '_chem_comp.name' 17 4 'Structure model' '_chem_comp.type' 18 4 'Structure model' '_entity.formula_weight' 19 4 'Structure model' '_entity.pdbx_description' 20 4 'Structure model' '_entity.type' 21 4 'Structure model' '_pdbx_database_status.status_code_sf' 22 4 'Structure model' '_software.name' 23 5 'Structure model' '_chem_comp.pdbx_synonyms' 24 5 'Structure model' '_database_2.pdbx_DOI' 25 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DM 'model building' . ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 SHARP-SOLOMON phasing . ? 5 BUSTER-TNT phasing . ? 6 DM phasing . ? 7 pirate phasing . ? 8 # _pdbx_entry_details.entry_id 2V8E _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS IS RESIDUES 321-505 OF THE ABOVE ENTRY WITH AN N- TERMINAL METHIONINE. RESIDUES 400, 402 AND 493 ARE POLYMORPHIC. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 PRO _pdbx_validate_close_contact.auth_seq_id_1 343 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 344 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.71 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A LYS 323 ? ? CG A LYS 323 ? ? 1.193 1.521 -0.328 0.027 N 2 1 N A PRO 324 ? ? CA A PRO 324 ? ? 1.318 1.468 -0.150 0.017 N 3 1 C A ARG 342 ? ? N A PRO 343 ? ? 1.485 1.338 0.147 0.019 Y 4 1 C A PRO 343 ? ? N A TYR 344 ? ? 1.065 1.336 -0.271 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A LYS 323 ? ? N A PRO 324 ? ? CA A PRO 324 ? ? 128.94 119.30 9.64 1.50 Y 2 1 CA A PRO 324 ? ? N A PRO 324 ? ? CD A PRO 324 ? ? 101.57 111.70 -10.13 1.40 N 3 1 C A ARG 342 ? ? N A PRO 343 ? ? CA A PRO 343 ? ? 110.83 127.00 -16.17 2.40 Y 4 1 CA A PRO 343 ? ? C A PRO 343 ? ? N A TYR 344 ? ? 137.95 117.20 20.75 2.20 Y 5 1 O A PRO 343 ? ? C A PRO 343 ? ? N A TYR 344 ? ? 98.22 122.70 -24.48 1.60 Y 6 1 C A VAL 383 ? ? N A PRO 384 ? ? CD A PRO 384 ? ? 113.88 128.40 -14.52 2.10 Y 7 1 CB A LEU 479 ? ? CG A LEU 479 ? ? CD1 A LEU 479 ? ? 86.47 111.00 -24.53 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 360 ? ? 82.71 -2.02 2 1 ASP A 370 ? ? -170.32 -162.13 3 1 HIS A 402 ? ? -52.26 109.15 4 1 LYS A 424 ? ? -165.60 92.80 5 1 GLN A 426 ? ? -59.07 179.92 6 1 GLU A 462 ? ? -126.35 -75.75 7 1 LYS A 470 ? ? 78.73 -3.07 8 1 LEU A 479 ? ? -38.43 112.46 9 1 ALA A 484 ? ? -89.24 35.21 10 1 ALA A 501 ? ? 175.47 -171.28 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 323 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 324 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -144.18 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id PRO _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 343 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -12.49 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 PRO _pdbx_validate_polymer_linkage.auth_seq_id_1 343 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 TYR _pdbx_validate_polymer_linkage.auth_seq_id_2 344 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.06 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 320 ? CG ? A MSE 1 CG 2 1 Y 1 A MSE 320 ? SE ? A MSE 1 SE 3 1 Y 1 A MSE 320 ? CE ? A MSE 1 CE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 GU4 O1 O N N 152 GU4 C1 C N S 153 GU4 O5 O N N 154 GU4 C5 C N R 155 GU4 C6 C N N 156 GU4 O6 O N N 157 GU4 S6 S N N 158 GU4 O22 O N N 159 GU4 O23 O N N 160 GU4 O21 O N N 161 GU4 C4 C N R 162 GU4 O4 O N N 163 GU4 S4 S N N 164 GU4 O25 O N N 165 GU4 O26 O N N 166 GU4 O24 O N N 167 GU4 C3 C N S 168 GU4 O3 O N N 169 GU4 S3 S N N 170 GU4 O28 O N N 171 GU4 O29 O N N 172 GU4 O27 O N N 173 GU4 C2 C N R 174 GU4 O2 O N N 175 GU4 S2 S N N 176 GU4 O11 O N N 177 GU4 O12 O N N 178 GU4 O10 O N N 179 GU4 HO1 H N N 180 GU4 H1 H N N 181 GU4 H5 H N N 182 GU4 H61 H N N 183 GU4 H62 H N N 184 GU4 H4 H N N 185 GU4 H3 H N N 186 GU4 H2 H N N 187 GU4 HO21 H N N 188 GU4 HO24 H N N 189 GU4 HO29 H N N 190 GU4 HO10 H N N 191 HIS N N N N 192 HIS CA C N S 193 HIS C C N N 194 HIS O O N N 195 HIS CB C N N 196 HIS CG C Y N 197 HIS ND1 N Y N 198 HIS CD2 C Y N 199 HIS CE1 C Y N 200 HIS NE2 N Y N 201 HIS OXT O N N 202 HIS H H N N 203 HIS H2 H N N 204 HIS HA H N N 205 HIS HB2 H N N 206 HIS HB3 H N N 207 HIS HD1 H N N 208 HIS HD2 H N N 209 HIS HE1 H N N 210 HIS HE2 H N N 211 HIS HXT H N N 212 HOH O O N N 213 HOH H1 H N N 214 HOH H2 H N N 215 ILE N N N N 216 ILE CA C N S 217 ILE C C N N 218 ILE O O N N 219 ILE CB C N S 220 ILE CG1 C N N 221 ILE CG2 C N N 222 ILE CD1 C N N 223 ILE OXT O N N 224 ILE H H N N 225 ILE H2 H N N 226 ILE HA H N N 227 ILE HB H N N 228 ILE HG12 H N N 229 ILE HG13 H N N 230 ILE HG21 H N N 231 ILE HG22 H N N 232 ILE HG23 H N N 233 ILE HD11 H N N 234 ILE HD12 H N N 235 ILE HD13 H N N 236 ILE HXT H N N 237 LEU N N N N 238 LEU CA C N S 239 LEU C C N N 240 LEU O O N N 241 LEU CB C N N 242 LEU CG C N N 243 LEU CD1 C N N 244 LEU CD2 C N N 245 LEU OXT O N N 246 LEU H H N N 247 LEU H2 H N N 248 LEU HA H N N 249 LEU HB2 H N N 250 LEU HB3 H N N 251 LEU HG H N N 252 LEU HD11 H N N 253 LEU HD12 H N N 254 LEU HD13 H N N 255 LEU HD21 H N N 256 LEU HD22 H N N 257 LEU HD23 H N N 258 LEU HXT H N N 259 LYS N N N N 260 LYS CA C N S 261 LYS C C N N 262 LYS O O N N 263 LYS CB C N N 264 LYS CG C N N 265 LYS CD C N N 266 LYS CE C N N 267 LYS NZ N N N 268 LYS OXT O N N 269 LYS H H N N 270 LYS H2 H N N 271 LYS HA H N N 272 LYS HB2 H N N 273 LYS HB3 H N N 274 LYS HG2 H N N 275 LYS HG3 H N N 276 LYS HD2 H N N 277 LYS HD3 H N N 278 LYS HE2 H N N 279 LYS HE3 H N N 280 LYS HZ1 H N N 281 LYS HZ2 H N N 282 LYS HZ3 H N N 283 LYS HXT H N N 284 MSE N N N N 285 MSE CA C N S 286 MSE C C N N 287 MSE O O N N 288 MSE OXT O N N 289 MSE CB C N N 290 MSE CG C N N 291 MSE SE SE N N 292 MSE CE C N N 293 MSE H H N N 294 MSE H2 H N N 295 MSE HA H N N 296 MSE HXT H N N 297 MSE HB2 H N N 298 MSE HB3 H N N 299 MSE HG2 H N N 300 MSE HG3 H N N 301 MSE HE1 H N N 302 MSE HE2 H N N 303 MSE HE3 H N N 304 PHE N N N N 305 PHE CA C N S 306 PHE C C N N 307 PHE O O N N 308 PHE CB C N N 309 PHE CG C Y N 310 PHE CD1 C Y N 311 PHE CD2 C Y N 312 PHE CE1 C Y N 313 PHE CE2 C Y N 314 PHE CZ C Y N 315 PHE OXT O N N 316 PHE H H N N 317 PHE H2 H N N 318 PHE HA H N N 319 PHE HB2 H N N 320 PHE HB3 H N N 321 PHE HD1 H N N 322 PHE HD2 H N N 323 PHE HE1 H N N 324 PHE HE2 H N N 325 PHE HZ H N N 326 PHE HXT H N N 327 PRO N N N N 328 PRO CA C N S 329 PRO C C N N 330 PRO O O N N 331 PRO CB C N N 332 PRO CG C N N 333 PRO CD C N N 334 PRO OXT O N N 335 PRO H H N N 336 PRO HA H N N 337 PRO HB2 H N N 338 PRO HB3 H N N 339 PRO HG2 H N N 340 PRO HG3 H N N 341 PRO HD2 H N N 342 PRO HD3 H N N 343 PRO HXT H N N 344 SER N N N N 345 SER CA C N S 346 SER C C N N 347 SER O O N N 348 SER CB C N N 349 SER OG O N N 350 SER OXT O N N 351 SER H H N N 352 SER H2 H N N 353 SER HA H N N 354 SER HB2 H N N 355 SER HB3 H N N 356 SER HG H N N 357 SER HXT H N N 358 SO4 S S N N 359 SO4 O1 O N N 360 SO4 O2 O N N 361 SO4 O3 O N N 362 SO4 O4 O N N 363 THR N N N N 364 THR CA C N S 365 THR C C N N 366 THR O O N N 367 THR CB C N R 368 THR OG1 O N N 369 THR CG2 C N N 370 THR OXT O N N 371 THR H H N N 372 THR H2 H N N 373 THR HA H N N 374 THR HB H N N 375 THR HG1 H N N 376 THR HG21 H N N 377 THR HG22 H N N 378 THR HG23 H N N 379 THR HXT H N N 380 TRP N N N N 381 TRP CA C N S 382 TRP C C N N 383 TRP O O N N 384 TRP CB C N N 385 TRP CG C Y N 386 TRP CD1 C Y N 387 TRP CD2 C Y N 388 TRP NE1 N Y N 389 TRP CE2 C Y N 390 TRP CE3 C Y N 391 TRP CZ2 C Y N 392 TRP CZ3 C Y N 393 TRP CH2 C Y N 394 TRP OXT O N N 395 TRP H H N N 396 TRP H2 H N N 397 TRP HA H N N 398 TRP HB2 H N N 399 TRP HB3 H N N 400 TRP HD1 H N N 401 TRP HE1 H N N 402 TRP HE3 H N N 403 TRP HZ2 H N N 404 TRP HZ3 H N N 405 TRP HH2 H N N 406 TRP HXT H N N 407 TYR N N N N 408 TYR CA C N S 409 TYR C C N N 410 TYR O O N N 411 TYR CB C N N 412 TYR CG C Y N 413 TYR CD1 C Y N 414 TYR CD2 C Y N 415 TYR CE1 C Y N 416 TYR CE2 C Y N 417 TYR CZ C Y N 418 TYR OH O N N 419 TYR OXT O N N 420 TYR H H N N 421 TYR H2 H N N 422 TYR HA H N N 423 TYR HB2 H N N 424 TYR HB3 H N N 425 TYR HD1 H N N 426 TYR HD2 H N N 427 TYR HE1 H N N 428 TYR HE2 H N N 429 TYR HH H N N 430 TYR HXT H N N 431 VAL N N N N 432 VAL CA C N S 433 VAL C C N N 434 VAL O O N N 435 VAL CB C N N 436 VAL CG1 C N N 437 VAL CG2 C N N 438 VAL OXT O N N 439 VAL H H N N 440 VAL H2 H N N 441 VAL HA H N N 442 VAL HB H N N 443 VAL HG11 H N N 444 VAL HG12 H N N 445 VAL HG13 H N N 446 VAL HG21 H N N 447 VAL HG22 H N N 448 VAL HG23 H N N 449 VAL HXT H N N 450 YYJ C1 C N N 451 YYJ C2 C N R 452 YYJ C3 C N S 453 YYJ C4 C N R 454 YYJ C5 C N R 455 YYJ C6 C N N 456 YYJ O1 O N N 457 YYJ O1S1 O N N 458 YYJ O1S3 O N N 459 YYJ O1S4 O N N 460 YYJ O1S6 O N N 461 YYJ O2 O N N 462 YYJ O2S1 O N N 463 YYJ O2S3 O N N 464 YYJ O2S4 O N N 465 YYJ O2S6 O N N 466 YYJ O3 O N N 467 YYJ O3S1 O N N 468 YYJ O3S3 O N N 469 YYJ O3S4 O N N 470 YYJ O3S6 O N N 471 YYJ O4 O N N 472 YYJ O5 O N N 473 YYJ O6 O N N 474 YYJ S1 S N N 475 YYJ S3 S N N 476 YYJ S4 S N N 477 YYJ S6 S N N 478 YYJ H11 H N N 479 YYJ H12 H N N 480 YYJ H1S1 H N N 481 YYJ H1S3 H N N 482 YYJ H1S4 H N N 483 YYJ H1S6 H N N 484 YYJ HO2 H N N 485 YYJ H3 H N N 486 YYJ H4 H N N 487 YYJ H5 H N N 488 YYJ H61 H N N 489 YYJ H62 H N N 490 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 GU4 O1 C1 sing N N 142 GU4 O1 HO1 sing N N 143 GU4 C1 O5 sing N N 144 GU4 C1 C2 sing N N 145 GU4 C1 H1 sing N N 146 GU4 O5 C5 sing N N 147 GU4 C5 C6 sing N N 148 GU4 C5 C4 sing N N 149 GU4 C5 H5 sing N N 150 GU4 C6 O6 sing N N 151 GU4 C6 H61 sing N N 152 GU4 C6 H62 sing N N 153 GU4 O6 S6 sing N N 154 GU4 S6 O22 doub N N 155 GU4 S6 O23 doub N N 156 GU4 S6 O21 sing N N 157 GU4 C4 O4 sing N N 158 GU4 C4 C3 sing N N 159 GU4 C4 H4 sing N N 160 GU4 O4 S4 sing N N 161 GU4 S4 O25 doub N N 162 GU4 S4 O26 doub N N 163 GU4 S4 O24 sing N N 164 GU4 C3 O3 sing N N 165 GU4 C3 C2 sing N N 166 GU4 C3 H3 sing N N 167 GU4 O3 S3 sing N N 168 GU4 S3 O28 doub N N 169 GU4 S3 O29 sing N N 170 GU4 S3 O27 doub N N 171 GU4 C2 O2 sing N N 172 GU4 C2 H2 sing N N 173 GU4 O2 S2 sing N N 174 GU4 S2 O11 doub N N 175 GU4 S2 O12 doub N N 176 GU4 S2 O10 sing N N 177 GU4 O21 HO21 sing N N 178 GU4 O24 HO24 sing N N 179 GU4 O29 HO29 sing N N 180 GU4 O10 HO10 sing N N 181 HIS N CA sing N N 182 HIS N H sing N N 183 HIS N H2 sing N N 184 HIS CA C sing N N 185 HIS CA CB sing N N 186 HIS CA HA sing N N 187 HIS C O doub N N 188 HIS C OXT sing N N 189 HIS CB CG sing N N 190 HIS CB HB2 sing N N 191 HIS CB HB3 sing N N 192 HIS CG ND1 sing Y N 193 HIS CG CD2 doub Y N 194 HIS ND1 CE1 doub Y N 195 HIS ND1 HD1 sing N N 196 HIS CD2 NE2 sing Y N 197 HIS CD2 HD2 sing N N 198 HIS CE1 NE2 sing Y N 199 HIS CE1 HE1 sing N N 200 HIS NE2 HE2 sing N N 201 HIS OXT HXT sing N N 202 HOH O H1 sing N N 203 HOH O H2 sing N N 204 ILE N CA sing N N 205 ILE N H sing N N 206 ILE N H2 sing N N 207 ILE CA C sing N N 208 ILE CA CB sing N N 209 ILE CA HA sing N N 210 ILE C O doub N N 211 ILE C OXT sing N N 212 ILE CB CG1 sing N N 213 ILE CB CG2 sing N N 214 ILE CB HB sing N N 215 ILE CG1 CD1 sing N N 216 ILE CG1 HG12 sing N N 217 ILE CG1 HG13 sing N N 218 ILE CG2 HG21 sing N N 219 ILE CG2 HG22 sing N N 220 ILE CG2 HG23 sing N N 221 ILE CD1 HD11 sing N N 222 ILE CD1 HD12 sing N N 223 ILE CD1 HD13 sing N N 224 ILE OXT HXT sing N N 225 LEU N CA sing N N 226 LEU N H sing N N 227 LEU N H2 sing N N 228 LEU CA C sing N N 229 LEU CA CB sing N N 230 LEU CA HA sing N N 231 LEU C O doub N N 232 LEU C OXT sing N N 233 LEU CB CG sing N N 234 LEU CB HB2 sing N N 235 LEU CB HB3 sing N N 236 LEU CG CD1 sing N N 237 LEU CG CD2 sing N N 238 LEU CG HG sing N N 239 LEU CD1 HD11 sing N N 240 LEU CD1 HD12 sing N N 241 LEU CD1 HD13 sing N N 242 LEU CD2 HD21 sing N N 243 LEU CD2 HD22 sing N N 244 LEU CD2 HD23 sing N N 245 LEU OXT HXT sing N N 246 LYS N CA sing N N 247 LYS N H sing N N 248 LYS N H2 sing N N 249 LYS CA C sing N N 250 LYS CA CB sing N N 251 LYS CA HA sing N N 252 LYS C O doub N N 253 LYS C OXT sing N N 254 LYS CB CG sing N N 255 LYS CB HB2 sing N N 256 LYS CB HB3 sing N N 257 LYS CG CD sing N N 258 LYS CG HG2 sing N N 259 LYS CG HG3 sing N N 260 LYS CD CE sing N N 261 LYS CD HD2 sing N N 262 LYS CD HD3 sing N N 263 LYS CE NZ sing N N 264 LYS CE HE2 sing N N 265 LYS CE HE3 sing N N 266 LYS NZ HZ1 sing N N 267 LYS NZ HZ2 sing N N 268 LYS NZ HZ3 sing N N 269 LYS OXT HXT sing N N 270 MSE N CA sing N N 271 MSE N H sing N N 272 MSE N H2 sing N N 273 MSE CA C sing N N 274 MSE CA CB sing N N 275 MSE CA HA sing N N 276 MSE C O doub N N 277 MSE C OXT sing N N 278 MSE OXT HXT sing N N 279 MSE CB CG sing N N 280 MSE CB HB2 sing N N 281 MSE CB HB3 sing N N 282 MSE CG SE sing N N 283 MSE CG HG2 sing N N 284 MSE CG HG3 sing N N 285 MSE SE CE sing N N 286 MSE CE HE1 sing N N 287 MSE CE HE2 sing N N 288 MSE CE HE3 sing N N 289 PHE N CA sing N N 290 PHE N H sing N N 291 PHE N H2 sing N N 292 PHE CA C sing N N 293 PHE CA CB sing N N 294 PHE CA HA sing N N 295 PHE C O doub N N 296 PHE C OXT sing N N 297 PHE CB CG sing N N 298 PHE CB HB2 sing N N 299 PHE CB HB3 sing N N 300 PHE CG CD1 doub Y N 301 PHE CG CD2 sing Y N 302 PHE CD1 CE1 sing Y N 303 PHE CD1 HD1 sing N N 304 PHE CD2 CE2 doub Y N 305 PHE CD2 HD2 sing N N 306 PHE CE1 CZ doub Y N 307 PHE CE1 HE1 sing N N 308 PHE CE2 CZ sing Y N 309 PHE CE2 HE2 sing N N 310 PHE CZ HZ sing N N 311 PHE OXT HXT sing N N 312 PRO N CA sing N N 313 PRO N CD sing N N 314 PRO N H sing N N 315 PRO CA C sing N N 316 PRO CA CB sing N N 317 PRO CA HA sing N N 318 PRO C O doub N N 319 PRO C OXT sing N N 320 PRO CB CG sing N N 321 PRO CB HB2 sing N N 322 PRO CB HB3 sing N N 323 PRO CG CD sing N N 324 PRO CG HG2 sing N N 325 PRO CG HG3 sing N N 326 PRO CD HD2 sing N N 327 PRO CD HD3 sing N N 328 PRO OXT HXT sing N N 329 SER N CA sing N N 330 SER N H sing N N 331 SER N H2 sing N N 332 SER CA C sing N N 333 SER CA CB sing N N 334 SER CA HA sing N N 335 SER C O doub N N 336 SER C OXT sing N N 337 SER CB OG sing N N 338 SER CB HB2 sing N N 339 SER CB HB3 sing N N 340 SER OG HG sing N N 341 SER OXT HXT sing N N 342 SO4 S O1 doub N N 343 SO4 S O2 doub N N 344 SO4 S O3 sing N N 345 SO4 S O4 sing N N 346 THR N CA sing N N 347 THR N H sing N N 348 THR N H2 sing N N 349 THR CA C sing N N 350 THR CA CB sing N N 351 THR CA HA sing N N 352 THR C O doub N N 353 THR C OXT sing N N 354 THR CB OG1 sing N N 355 THR CB CG2 sing N N 356 THR CB HB sing N N 357 THR OG1 HG1 sing N N 358 THR CG2 HG21 sing N N 359 THR CG2 HG22 sing N N 360 THR CG2 HG23 sing N N 361 THR OXT HXT sing N N 362 TRP N CA sing N N 363 TRP N H sing N N 364 TRP N H2 sing N N 365 TRP CA C sing N N 366 TRP CA CB sing N N 367 TRP CA HA sing N N 368 TRP C O doub N N 369 TRP C OXT sing N N 370 TRP CB CG sing N N 371 TRP CB HB2 sing N N 372 TRP CB HB3 sing N N 373 TRP CG CD1 doub Y N 374 TRP CG CD2 sing Y N 375 TRP CD1 NE1 sing Y N 376 TRP CD1 HD1 sing N N 377 TRP CD2 CE2 doub Y N 378 TRP CD2 CE3 sing Y N 379 TRP NE1 CE2 sing Y N 380 TRP NE1 HE1 sing N N 381 TRP CE2 CZ2 sing Y N 382 TRP CE3 CZ3 doub Y N 383 TRP CE3 HE3 sing N N 384 TRP CZ2 CH2 doub Y N 385 TRP CZ2 HZ2 sing N N 386 TRP CZ3 CH2 sing Y N 387 TRP CZ3 HZ3 sing N N 388 TRP CH2 HH2 sing N N 389 TRP OXT HXT sing N N 390 TYR N CA sing N N 391 TYR N H sing N N 392 TYR N H2 sing N N 393 TYR CA C sing N N 394 TYR CA CB sing N N 395 TYR CA HA sing N N 396 TYR C O doub N N 397 TYR C OXT sing N N 398 TYR CB CG sing N N 399 TYR CB HB2 sing N N 400 TYR CB HB3 sing N N 401 TYR CG CD1 doub Y N 402 TYR CG CD2 sing Y N 403 TYR CD1 CE1 sing Y N 404 TYR CD1 HD1 sing N N 405 TYR CD2 CE2 doub Y N 406 TYR CD2 HD2 sing N N 407 TYR CE1 CZ doub Y N 408 TYR CE1 HE1 sing N N 409 TYR CE2 CZ sing Y N 410 TYR CE2 HE2 sing N N 411 TYR CZ OH sing N N 412 TYR OH HH sing N N 413 TYR OXT HXT sing N N 414 VAL N CA sing N N 415 VAL N H sing N N 416 VAL N H2 sing N N 417 VAL CA C sing N N 418 VAL CA CB sing N N 419 VAL CA HA sing N N 420 VAL C O doub N N 421 VAL C OXT sing N N 422 VAL CB CG1 sing N N 423 VAL CB CG2 sing N N 424 VAL CB HB sing N N 425 VAL CG1 HG11 sing N N 426 VAL CG1 HG12 sing N N 427 VAL CG1 HG13 sing N N 428 VAL CG2 HG21 sing N N 429 VAL CG2 HG22 sing N N 430 VAL CG2 HG23 sing N N 431 VAL OXT HXT sing N N 432 YYJ C1 C2 sing N N 433 YYJ C1 O1 sing N N 434 YYJ C1 H11 sing N N 435 YYJ C1 H12 sing N N 436 YYJ C2 C3 sing N N 437 YYJ C2 O2 sing N N 438 YYJ C2 O5 sing N N 439 YYJ C3 C4 sing N N 440 YYJ C3 O3 sing N N 441 YYJ C3 H3 sing N N 442 YYJ C4 C5 sing N N 443 YYJ C4 O4 sing N N 444 YYJ C4 H4 sing N N 445 YYJ C5 C6 sing N N 446 YYJ C5 O5 sing N N 447 YYJ C5 H5 sing N N 448 YYJ C6 O6 sing N N 449 YYJ C6 H61 sing N N 450 YYJ C6 H62 sing N N 451 YYJ O1 S1 sing N N 452 YYJ O1S1 S1 sing N N 453 YYJ O1S1 H1S1 sing N N 454 YYJ O1S3 H1S3 sing N N 455 YYJ O1S3 S3 sing N N 456 YYJ O1S4 S4 sing N N 457 YYJ O1S4 H1S4 sing N N 458 YYJ O1S6 H1S6 sing N N 459 YYJ O1S6 S6 sing N N 460 YYJ O2 HO2 sing N N 461 YYJ O2S1 S1 doub N N 462 YYJ O2S3 S3 doub N N 463 YYJ O2S4 S4 doub N N 464 YYJ O2S6 S6 doub N N 465 YYJ O3 S3 sing N N 466 YYJ O3S1 S1 doub N N 467 YYJ O3S3 S3 doub N N 468 YYJ O3S4 S4 doub N N 469 YYJ O3S6 S6 doub N N 470 YYJ O4 S4 sing N N 471 YYJ O6 S6 sing N N 472 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GU4 1 B GU4 1 A SCR 1507 n B 2 YYJ 2 B YYJ 2 A SCR 1507 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GU4 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcp[2S,3S,4S,6S]a' GU4 'COMMON NAME' GMML 1.0 2-sulfo-3-sulfo-4-sulfo-6-sulfo-a-D-glucopyranose GU4 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp2SO33SO34SO36SO3 # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 ;WURCS=2.0/2,2,1/[ha122h-2b_2-5_1*OSO/3=O/3=O_3*OSO/3=O/3=O_4*OSO/3=O/3=O_6*OSO/3=O/3=O][a2122h-1a_1-5_2*OSO/3=O/3=O_3*OSO/3=O/3=O_4*OSO/3=O/3=O_6*OSO/3=O/3=O]/1-2/a2-b1 ; WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-Fruf1SO33SO34SO36SO3]{[(2+1)][a-D-Glcp2SO33SO34SO36SO3]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GU4 _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 YYJ _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GU4 1 n 2 YYJ 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 'SULFATE ION' SO4 5 GLYCEROL GOL 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2JGW _pdbx_initial_refinement_model.details 'PDB ENTRY 2JGW' #